Wall clock time and date at job start Tue Mar 31 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46991 * 2 1 4 4 C 1.36095 * 117.00142 * 179.97438 * 3 2 1 5 5 C 1.38473 * 120.02424 * 0.02562 * 4 3 2 6 6 C 1.38261 * 120.07282 * 179.97438 * 5 4 3 7 7 C 1.38706 * 120.12324 * 0.02562 * 6 5 4 8 8 O 1.35979 * 119.97708 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99744 * 359.97438 * 8 7 6 10 10 C 1.38646 * 120.04752 * 359.78562 * 7 6 5 11 11 C 1.38703 * 119.92952 * 0.44768 * 10 7 6 12 12 N 1.39944 * 120.05941 * 179.81176 * 11 10 7 13 13 C 1.46495 * 120.00257 * 359.71971 * 12 11 10 14 14 C 1.53006 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08993 * 109.46955 * 55.00154 * 14 13 12 16 16 C 1.52999 * 109.46626 * 294.99682 * 14 13 12 17 17 C 1.52997 * 109.47127 * 175.00143 * 14 13 12 18 18 C 1.50701 * 109.47348 * 184.99767 * 17 14 13 19 19 H 1.07998 * 119.99454 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00255 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99765 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00010 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47147 * 89.99766 * 22 20 18 24 24 H 1.48500 * 109.47042 * 209.99738 * 22 20 18 25 25 H 1.48496 * 109.46848 * 329.99514 * 22 20 18 26 26 H 1.09000 * 109.47470 * 300.00292 * 1 2 3 27 27 H 1.09000 * 109.47012 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47470 * 239.99708 * 2 1 3 30 30 H 1.09004 * 109.46590 * 119.99428 * 2 1 3 31 31 H 1.08001 * 119.96337 * 359.97438 * 5 4 3 32 32 H 1.07997 * 119.94080 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.46645 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47278 * 300.00416 * 9 8 7 35 35 H 1.09003 * 109.46960 * 60.00459 * 9 8 7 36 36 H 1.08000 * 120.03706 * 180.25194 * 10 7 6 37 37 H 0.97003 * 119.99605 * 179.72377 * 12 11 10 38 38 H 1.09000 * 109.47236 * 60.00011 * 13 12 11 39 39 H 1.09007 * 109.47365 * 300.00057 * 13 12 11 40 40 H 1.08993 * 109.47839 * 299.99931 * 16 14 13 41 41 H 1.09000 * 109.47160 * 60.00369 * 16 14 13 42 42 H 1.09002 * 109.46719 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.47196 * 304.99671 * 17 14 13 44 44 H 1.09001 * 109.47630 * 64.99767 * 17 14 13 45 45 H 0.97000 * 119.99505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3555 1.5256 0.0005 5 6 4.1996 0.4279 0.0005 6 6 5.5704 0.6079 0.0005 7 6 6.1044 1.8881 0.0011 8 8 7.4530 2.0618 0.0006 9 6 8.2590 0.8817 0.0000 10 6 5.2639 2.9908 -0.0028 11 6 3.8884 2.8126 0.0021 12 7 3.0376 3.9237 0.0021 13 6 3.5996 5.2766 0.0032 14 6 2.4630 6.3010 0.0036 15 1 1.7984 6.1058 0.8451 16 6 1.6765 6.1905 -1.3041 17 6 3.0462 7.7098 0.1304 18 6 1.9246 8.7086 0.2543 19 1 0.8984 8.3721 0.2432 20 6 2.2084 10.0517 0.3817 21 7 1.2294 10.9234 0.4893 22 14 3.9834 10.6336 0.4001 23 1 4.4227 10.9265 -0.9878 24 1 4.0923 11.8644 1.2239 25 1 4.8461 9.5726 0.9790 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.7866 -0.5701 0.0005 32 1 6.2267 -0.2497 0.0001 33 1 9.3125 1.1614 -0.0008 34 1 8.0400 0.2917 0.8899 35 1 8.0393 0.2921 -0.8900 36 1 5.6799 3.9875 -0.0065 37 1 2.0758 3.7981 0.0015 38 1 4.2141 5.4156 -0.8864 39 1 4.2130 5.4147 0.8936 40 1 2.3411 6.3856 -2.1456 41 1 1.2610 5.1868 -1.3944 42 1 0.8671 6.9205 -1.3040 43 1 3.6792 7.7626 1.0162 44 1 3.6400 7.9383 -0.7546 45 1 1.4292 11.8683 0.5794 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602496470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:59 Heat of formation + Delta-G solvation = -64.433248 kcal Electronic energy + Delta-G solvation = -23344.294434 eV Core-core repulsion = 19941.032960 eV Total energy + Delta-G solvation = -3403.261474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47292 -38.99995 -37.50091 -36.00388 -33.82452 -32.11734 -31.76259 -30.07053 -28.62176 -27.30178 -27.08475 -25.77012 -24.06289 -22.53460 -21.75586 -21.00054 -19.41194 -18.30728 -17.73143 -17.01934 -16.48808 -16.18474 -15.71523 -15.47506 -14.94032 -14.70789 -14.54114 -14.04869 -13.92709 -13.51095 -13.17368 -13.04754 -12.79034 -12.62617 -12.47022 -12.28461 -12.22868 -12.11836 -11.73867 -11.53906 -11.34103 -11.05704 -10.88935 -10.77903 -10.52441 -10.41175 -10.00925 -9.76382 -9.71227 -9.56573 -9.10200 -8.52597 -8.11026 -6.99783 -6.03049 -4.00731 1.43878 1.63682 3.16469 3.20182 3.32429 3.40110 3.43700 3.79979 3.85129 4.46617 4.68166 4.75781 4.86575 4.97138 5.00872 5.02946 5.06396 5.19320 5.30384 5.31628 5.39044 5.50820 5.54153 5.61402 5.63086 5.74004 5.81936 5.89507 5.91138 6.14730 6.27273 6.30983 6.36433 6.40610 6.55327 6.72610 6.87289 7.03794 7.20594 7.24306 7.37073 7.41418 7.66596 7.80233 8.00425 8.54733 9.01620 9.59412 11.10209 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003700 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.748627 B = 7565.957821 C = 9429.798612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.319 6.319 4 C 0.016 3.984 5 C -0.125 4.125 6 C -0.241 4.241 7 C 0.143 3.857 8 O -0.318 6.318 9 C 0.031 3.969 10 C -0.207 4.207 11 C 0.244 3.756 12 N -0.729 5.729 13 C 0.122 3.878 14 C -0.087 4.087 15 H 0.068 0.932 16 C -0.134 4.134 17 C -0.006 4.006 18 C -0.515 4.515 19 H 0.074 0.926 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.137 0.863 37 H 0.407 0.593 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.068 0.932 43 H 0.017 0.983 44 H 0.014 0.986 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -25.502 -1.565 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.235 6.235 4 C -0.031 4.031 5 C -0.145 4.145 6 C -0.262 4.262 7 C 0.097 3.903 8 O -0.232 6.232 9 C -0.065 4.065 10 C -0.231 4.231 11 C 0.137 3.863 12 N -0.357 5.357 13 C -0.002 4.002 14 C -0.106 4.106 15 H 0.087 0.913 16 C -0.191 4.191 17 C -0.044 4.044 18 C -0.553 4.553 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.243 0.757 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.036 0.964 44 H 0.032 0.968 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.361 -24.774 -1.546 25.891 hybrid contribution 0.692 -0.160 0.018 0.710 sum 8.053 -24.933 -1.527 26.246 Atomic orbital electron populations 1.21770 0.93009 1.02533 1.03658 1.22634 0.95581 0.82493 1.00755 1.85995 1.18602 1.28482 1.90371 1.18257 0.82665 0.92315 1.09910 1.20652 0.93203 0.97174 1.03425 1.20633 0.95287 0.95569 1.14742 1.18534 0.82245 0.93092 0.96403 1.86071 1.14732 1.33381 1.88987 1.22984 0.94876 0.87472 1.01136 1.19608 0.89630 0.98503 1.15360 1.16881 0.89464 0.84973 0.94987 1.44871 1.07936 1.02866 1.80002 1.21692 0.97356 0.80442 1.00662 1.21236 0.95474 0.95458 0.98386 0.91316 1.21732 1.00771 0.99801 0.96817 1.19570 0.97064 0.91369 0.96411 1.21093 0.93760 0.90537 1.49934 0.90817 1.25019 0.96965 0.96859 0.94662 1.69915 1.31536 1.02131 1.50746 0.86806 0.85984 0.78352 0.78328 1.20319 1.21456 1.18954 0.91486 0.91500 0.90700 0.92598 0.92591 0.85724 0.85989 0.88598 0.92869 0.92885 0.84498 0.75719 0.92454 0.92426 0.93543 0.94721 0.91282 0.96431 0.96771 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.14 9.38 -20.04 -0.19 -4.32 16 4 C 0.02 0.22 6.70 -39.10 -0.26 -0.04 16 5 C -0.12 -1.47 9.03 -39.49 -0.36 -1.83 16 6 C -0.24 -2.83 9.03 -39.40 -0.36 -3.19 16 7 C 0.14 1.94 6.68 -39.26 -0.26 1.67 16 8 O -0.32 -4.03 10.50 -19.67 -0.21 -4.23 16 9 C 0.03 0.25 9.81 101.05 0.99 1.24 16 10 C -0.21 -3.06 9.25 -39.26 -0.36 -3.43 16 11 C 0.24 3.66 6.67 -83.59 -0.56 3.10 16 12 N -0.73 -11.20 5.46 -58.51 -0.32 -11.52 16 13 C 0.12 2.02 4.31 -4.04 -0.02 2.00 16 14 C -0.09 -1.66 2.37 -90.62 -0.22 -1.88 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.13 -2.45 8.88 37.16 0.33 -2.13 16 17 C -0.01 -0.15 3.52 -27.88 -0.10 -0.24 16 18 C -0.52 -14.38 8.96 -34.44 -0.31 -14.69 16 19 H 0.07 2.20 7.30 -52.49 -0.38 1.82 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 22 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.12 1.14 6.29 -52.49 -0.33 0.81 16 32 H 0.12 1.12 6.28 -52.49 -0.33 0.79 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 35 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 36 H 0.14 2.04 6.73 -52.49 -0.35 1.69 16 37 H 0.41 6.16 7.01 -40.82 -0.29 5.88 16 38 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 39 H 0.06 0.96 7.96 -51.93 -0.41 0.54 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.55 7.18 -51.93 -0.37 0.18 16 42 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 43 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 44 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -31.49 360.16 -7.47 -38.97 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.30 Total: 3.30 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.99 Total: -17.62 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.45 Total: -38.56 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.39 Total: -8.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.49 -7.47 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602496470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.467 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds