Wall clock time and date at job start Tue Mar 31 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46991 * 2 1 4 4 C 1.36095 * 117.00142 * 179.97438 * 3 2 1 5 5 C 1.38473 * 120.02424 * 0.02562 * 4 3 2 6 6 C 1.38261 * 120.07282 * 179.97438 * 5 4 3 7 7 C 1.38706 * 120.12324 * 0.02562 * 6 5 4 8 8 O 1.35979 * 119.97708 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99744 * 359.97438 * 8 7 6 10 10 C 1.38646 * 120.04752 * 359.78562 * 7 6 5 11 11 C 1.38703 * 119.92952 * 0.44768 * 10 7 6 12 12 N 1.39944 * 120.05941 * 179.81176 * 11 10 7 13 13 C 1.46495 * 120.00257 * 359.71971 * 12 11 10 14 14 C 1.53006 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08993 * 109.46955 * 55.00154 * 14 13 12 16 16 C 1.52999 * 109.46626 * 294.99682 * 14 13 12 17 17 C 1.52997 * 109.47127 * 175.00143 * 14 13 12 18 18 C 1.50701 * 109.47348 * 184.99767 * 17 14 13 19 19 H 1.07998 * 119.99454 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00255 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99765 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00010 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47147 * 89.99766 * 22 20 18 24 24 H 1.48500 * 109.47042 * 209.99738 * 22 20 18 25 25 H 1.48496 * 109.46848 * 329.99514 * 22 20 18 26 26 H 1.09000 * 109.47470 * 300.00292 * 1 2 3 27 27 H 1.09000 * 109.47012 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47470 * 239.99708 * 2 1 3 30 30 H 1.09004 * 109.46590 * 119.99428 * 2 1 3 31 31 H 1.08001 * 119.96337 * 359.97438 * 5 4 3 32 32 H 1.07997 * 119.94080 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.46645 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47278 * 300.00416 * 9 8 7 35 35 H 1.09003 * 109.46960 * 60.00459 * 9 8 7 36 36 H 1.08000 * 120.03706 * 180.25194 * 10 7 6 37 37 H 0.97003 * 119.99605 * 179.72377 * 12 11 10 38 38 H 1.09000 * 109.47236 * 60.00011 * 13 12 11 39 39 H 1.09007 * 109.47365 * 300.00057 * 13 12 11 40 40 H 1.08993 * 109.47839 * 299.99931 * 16 14 13 41 41 H 1.09000 * 109.47160 * 60.00369 * 16 14 13 42 42 H 1.09002 * 109.46719 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.47196 * 304.99671 * 17 14 13 44 44 H 1.09001 * 109.47630 * 64.99767 * 17 14 13 45 45 H 0.97000 * 119.99505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3555 1.5256 0.0005 5 6 4.1996 0.4279 0.0005 6 6 5.5704 0.6079 0.0005 7 6 6.1044 1.8881 0.0011 8 8 7.4530 2.0618 0.0006 9 6 8.2590 0.8817 0.0000 10 6 5.2639 2.9908 -0.0028 11 6 3.8884 2.8126 0.0021 12 7 3.0376 3.9237 0.0021 13 6 3.5996 5.2766 0.0032 14 6 2.4630 6.3010 0.0036 15 1 1.7984 6.1058 0.8451 16 6 1.6765 6.1905 -1.3041 17 6 3.0462 7.7098 0.1304 18 6 1.9246 8.7086 0.2543 19 1 0.8984 8.3721 0.2432 20 6 2.2084 10.0517 0.3817 21 7 1.2294 10.9234 0.4893 22 14 3.9834 10.6336 0.4001 23 1 4.4227 10.9265 -0.9878 24 1 4.0923 11.8644 1.2239 25 1 4.8461 9.5726 0.9790 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.7866 -0.5701 0.0005 32 1 6.2267 -0.2497 0.0001 33 1 9.3125 1.1614 -0.0008 34 1 8.0400 0.2917 0.8899 35 1 8.0393 0.2921 -0.8900 36 1 5.6799 3.9875 -0.0065 37 1 2.0758 3.7981 0.0015 38 1 4.2141 5.4156 -0.8864 39 1 4.2130 5.4147 0.8936 40 1 2.3411 6.3856 -2.1456 41 1 1.2610 5.1868 -1.3944 42 1 0.8671 6.9205 -1.3040 43 1 3.6792 7.7626 1.0162 44 1 3.6400 7.9383 -0.7546 45 1 1.4292 11.8683 0.5794 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602496470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:58 Heat of formation + Delta-G solvation = -83.902234 kcal Electronic energy + Delta-G solvation = -23345.138673 eV Core-core repulsion = 19941.032960 eV Total energy + Delta-G solvation = -3404.105713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41462 -39.86828 -38.71577 -37.20407 -35.31737 -33.98176 -32.52009 -31.08322 -29.95634 -28.86528 -27.82105 -27.09937 -25.07388 -24.10241 -22.68048 -22.08368 -20.92613 -19.36876 -18.95862 -18.59997 -17.65891 -16.98606 -16.64181 -16.48088 -16.34298 -15.96811 -15.69958 -15.55889 -15.06459 -14.74002 -14.58851 -14.16589 -14.01671 -13.77809 -13.53709 -13.49311 -13.16095 -13.05921 -12.96727 -12.85233 -12.66009 -12.34119 -12.20380 -12.05841 -11.73313 -11.69461 -11.61100 -11.33369 -11.23317 -11.11922 -10.81078 -10.73776 -9.11648 -8.26187 -8.04315 -6.28841 0.45812 0.65030 1.37368 1.39001 1.50654 2.28240 2.35298 2.38172 2.75166 2.86362 3.09347 3.84882 3.98855 4.11582 4.12986 4.14020 4.23456 4.29986 4.30796 4.41611 4.44064 4.47176 4.59848 4.69506 4.73400 4.73895 4.79998 4.83880 4.89128 4.98754 4.99463 5.03721 5.21996 5.25256 5.34418 5.37335 5.40127 5.46622 5.60965 5.63611 5.69324 6.17243 6.32872 6.47874 6.69277 6.78370 6.87162 7.34830 8.90406 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003700 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.748627 B = 7565.957821 C = 9429.798612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.339 6.339 4 C 0.007 3.993 5 C -0.121 4.121 6 C -0.232 4.232 7 C 0.132 3.868 8 O -0.340 6.340 9 C 0.020 3.980 10 C -0.224 4.224 11 C 0.221 3.779 12 N -0.733 5.733 13 C 0.139 3.861 14 C -0.080 4.080 15 H 0.057 0.943 16 C -0.126 4.126 17 C -0.004 4.004 18 C -0.519 4.519 19 H 0.037 0.963 20 C 0.003 3.997 21 N -0.953 5.953 22 Si 0.946 3.054 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.246 1.246 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.406 0.594 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -28.412 -1.824 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.255 6.255 4 C -0.040 4.040 5 C -0.140 4.140 6 C -0.253 4.253 7 C 0.086 3.914 8 O -0.254 6.254 9 C -0.074 4.074 10 C -0.248 4.248 11 C 0.116 3.884 12 N -0.362 5.362 13 C 0.015 3.985 14 C -0.099 4.099 15 H 0.076 0.924 16 C -0.183 4.183 17 C -0.042 4.042 18 C -0.557 4.557 19 H 0.055 0.945 20 C -0.193 4.193 21 N -0.594 5.594 22 Si 0.770 3.230 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.170 1.170 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.169 0.831 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.242 0.758 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.561 -27.734 -1.807 29.392 hybrid contribution -0.030 0.597 0.103 0.607 sum 9.531 -27.137 -1.705 28.813 Atomic orbital electron populations 1.21800 0.92192 1.03951 1.02805 1.22931 0.96294 0.81115 1.01959 1.85986 1.18262 1.30824 1.90381 1.18418 0.83407 0.92313 1.09901 1.21009 0.93073 0.97975 1.01988 1.20989 0.95746 0.95789 1.12735 1.18672 0.82778 0.93417 0.96536 1.86045 1.14495 1.35927 1.88901 1.23308 0.95201 0.86571 1.02305 1.19686 0.90021 0.98784 1.16339 1.17050 0.89536 0.85377 0.96418 1.44656 1.07892 1.02469 1.81221 1.21352 0.95846 0.80544 1.00799 1.21061 0.96201 0.94197 0.98406 0.92406 1.21629 0.99822 1.00335 0.96539 1.19513 0.95594 0.92487 0.96625 1.21412 0.93641 0.91773 1.48922 0.94514 1.25970 1.01814 0.97083 0.94463 1.70070 1.34174 1.02597 1.52593 0.85720 0.80283 0.78166 0.78879 1.19258 1.21234 1.16963 0.92392 0.92295 0.88130 0.91240 0.91326 0.82792 0.83052 0.86752 0.91644 0.91609 0.85506 0.75835 0.92091 0.92602 0.93052 0.92314 0.94182 0.96158 0.96036 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.83 5.46 71.98 0.39 1.22 16 3 O -0.34 -8.33 9.38 -94.63 -0.89 -9.22 16 4 C 0.01 0.19 6.70 22.58 0.15 0.34 16 5 C -0.12 -2.50 9.03 22.33 0.20 -2.29 16 6 C -0.23 -4.74 9.03 22.39 0.20 -4.54 16 7 C 0.13 3.35 6.68 22.48 0.15 3.50 16 8 O -0.34 -8.01 10.50 -93.31 -0.98 -8.99 16 9 C 0.02 0.27 9.81 113.37 1.11 1.38 16 10 C -0.22 -6.53 9.25 22.48 0.21 -6.32 16 11 C 0.22 6.51 6.67 38.21 0.25 6.76 16 12 N -0.73 -22.36 5.46 -339.02 -1.85 -24.21 16 13 C 0.14 4.55 4.31 86.38 0.37 4.92 16 14 C -0.08 -3.09 2.37 -10.79 -0.03 -3.11 16 15 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.13 -4.66 8.88 71.98 0.64 -4.02 16 17 C 0.00 -0.20 3.52 29.85 0.10 -0.10 16 18 C -0.52 -29.82 8.96 25.60 0.23 -29.59 16 19 H 0.04 2.31 7.30 -2.91 -0.02 2.29 16 20 C 0.00 0.18 5.47 84.65 0.46 0.64 16 21 N -0.95 -60.38 13.96 21.45 0.30 -60.09 16 22 Si 0.95 44.74 27.47 68.60 1.88 46.63 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 30 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 31 H 0.15 2.18 6.29 -2.91 -0.02 2.17 16 32 H 0.15 2.13 6.28 -2.91 -0.02 2.11 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 35 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16 36 H 0.13 3.81 6.73 -2.91 -0.02 3.79 16 37 H 0.41 12.27 7.01 -92.71 -0.65 11.62 16 38 H 0.06 1.95 7.94 -2.39 -0.02 1.93 16 39 H 0.06 1.84 7.96 -2.38 -0.02 1.82 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.87 7.18 -2.39 -0.02 1.85 16 42 H 0.04 1.69 6.95 -2.39 -0.02 1.67 16 43 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 44 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 45 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -69.72 360.16 3.93 -65.79 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.27 Total: 22.59 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 5.20 Total: -32.50 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.55 Total: -84.30 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.87 Total: -18.20 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.72 3.93 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602496470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.111 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds