Wall clock time and date at job start Tue Mar 31 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99694 * 2 1 4 4 H 1.48493 * 109.47150 * 240.00004 * 3 2 1 5 5 H 1.48501 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46764 * 120.00415 * 3 2 1 7 7 C 1.37876 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00489 * 159.68307 * 7 2 1 9 9 C 1.50702 * 119.99862 * 339.68916 * 7 2 1 10 10 C 1.53006 * 115.54901 * 326.05043 * 9 7 2 11 11 N 1.46906 * 109.47042 * 281.04058 * 10 9 7 12 12 C 1.46843 * 110.99924 * 283.89694 * 11 10 9 13 13 C 1.53040 * 109.52349 * 185.83921 * 12 11 10 14 14 C 1.53119 * 109.27830 * 300.81790 * 13 12 11 15 15 C 1.53120 * 109.15989 * 57.65179 * 14 13 12 16 16 H 1.08999 * 109.50419 * 62.32730 * 15 14 13 17 17 N 1.46498 * 109.50278 * 182.40358 * 15 14 13 18 18 C 1.47049 * 125.41159 * 240.02521 * 17 15 14 19 19 C 1.54111 * 103.86076 * 180.02562 * 18 17 15 20 20 N 1.47044 * 103.86429 * 0.02562 * 19 18 17 21 21 C 1.33948 * 109.17892 * 0.02562 * 20 19 18 22 22 O 1.21587 * 123.04271 * 179.97438 * 21 20 19 23 23 C 1.46849 * 110.99747 * 48.10149 * 11 10 9 24 24 C 1.52997 * 117.52281 * 111.75213 * 9 7 2 25 25 C 1.52995 * 60.00099 * 107.47721 * 24 9 7 26 26 H 0.97001 * 120.00222 * 5.01733 * 1 2 3 27 27 H 1.08996 * 109.47053 * 161.04299 * 10 9 7 28 28 H 1.08994 * 109.47289 * 41.03799 * 10 9 7 29 29 H 1.08996 * 109.46529 * 65.82185 * 12 11 10 30 30 H 1.09001 * 109.45846 * 305.85032 * 12 11 10 31 31 H 1.08998 * 109.50167 * 180.87600 * 13 12 11 32 32 H 1.09003 * 109.53231 * 60.77823 * 13 12 11 33 33 H 1.08997 * 109.52212 * 297.75216 * 14 13 12 34 34 H 1.08998 * 109.57660 * 177.59124 * 14 13 12 35 35 H 1.09002 * 110.55062 * 298.59460 * 18 17 15 36 36 H 1.08999 * 110.55061 * 61.40730 * 18 17 15 37 37 H 1.09004 * 110.54677 * 241.40304 * 19 18 17 38 38 H 1.09001 * 110.54744 * 118.59849 * 19 18 17 39 39 H 0.97004 * 125.41619 * 180.26530 * 20 19 18 40 40 H 1.09002 * 109.46533 * 54.14757 * 23 11 10 41 41 H 1.09001 * 109.46600 * 294.17393 * 23 11 10 42 42 H 1.08997 * 117.49809 * 214.97098 * 24 9 7 43 43 H 1.09005 * 117.49152 * 359.97438 * 24 9 7 44 44 H 1.08996 * 117.50312 * 252.51013 * 25 24 9 45 45 H 1.09004 * 117.49463 * 107.49040 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0342 -1.2230 -0.3253 9 6 1.3214 -2.4588 0.4519 10 6 0.2931 -2.2889 1.5721 11 7 0.9881 -2.1697 2.8609 12 6 1.4731 -3.4775 3.3200 13 6 2.0605 -3.3401 4.7266 14 6 3.2106 -2.3297 4.6976 15 6 2.6896 -0.9901 4.1700 16 1 1.9268 -0.6044 4.8464 17 7 3.7964 -0.0340 4.0850 18 6 3.8720 1.2478 4.8016 19 6 5.2230 1.8407 4.3560 20 7 5.7647 0.8302 3.4353 21 6 4.8993 -0.1878 3.3406 22 8 5.0974 -1.1636 2.6427 23 6 2.0840 -1.1956 2.7796 24 6 1.0440 -3.5295 -0.6051 25 6 2.1426 -3.7496 0.4366 26 1 -0.4850 0.8368 -0.0735 27 1 -0.3669 -3.1560 1.5941 28 1 -0.2951 -1.3891 1.3920 29 1 2.2432 -3.8390 2.6386 30 1 0.6446 -4.1854 3.3401 31 1 2.4344 -4.3078 5.0608 32 1 1.2875 -2.9921 5.4119 33 1 4.0011 -2.6964 4.0429 34 1 3.6048 -2.1961 5.7050 35 1 3.0514 1.9011 4.5048 36 1 3.8620 1.0849 5.8793 37 1 5.8842 1.9721 5.2126 38 1 5.0729 2.7881 3.8384 39 1 6.6154 0.8896 2.9729 40 1 1.6992 -0.2462 2.4072 41 1 2.8513 -1.5678 2.1008 42 1 0.1290 -4.1128 -0.5026 43 1 1.3553 -3.3190 -1.6283 44 1 3.1769 -3.6841 0.0990 45 1 1.9504 -4.4778 1.2246 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602783940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:38 Heat of formation + Delta-G solvation = 32.564185 kcal Electronic energy + Delta-G solvation = -26277.077889 eV Core-core repulsion = 22910.315290 eV Total energy + Delta-G solvation = -3366.762599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76465 -38.62771 -36.03341 -35.88692 -33.52954 -32.30770 -31.53873 -29.47643 -28.10173 -25.98343 -25.46624 -22.99123 -22.80621 -22.06787 -21.21124 -20.03925 -19.00488 -18.57179 -17.39304 -16.24989 -16.15843 -15.59576 -14.83528 -14.52748 -14.27471 -14.10170 -13.94048 -13.67097 -13.41489 -13.35952 -12.92138 -12.76242 -12.35082 -12.22276 -11.94964 -11.83316 -11.56484 -11.10653 -10.94015 -10.83076 -10.52663 -10.43746 -10.18452 -10.06126 -9.92031 -9.84192 -9.57783 -9.24173 -8.97911 -8.91970 -8.67244 -8.19170 -7.88651 -7.05756 -6.04052 -3.94032 2.87962 3.27176 3.31778 3.39109 3.60451 4.11148 4.39393 4.49402 4.89807 4.92282 5.08423 5.19905 5.34285 5.41571 5.46657 5.52968 5.65997 5.67219 5.77327 5.97213 6.08199 6.12101 6.22722 6.27284 6.31193 6.45798 6.54328 6.59607 6.70632 6.73510 6.79469 6.86732 7.01180 7.09545 7.12773 7.34536 7.36231 7.47057 7.54181 7.70086 7.91647 8.04290 8.23040 8.29283 8.57284 8.94796 9.02828 9.55122 10.97510 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.008953 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.001446 B = 3126.630903 C = 4301.633937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.476 4.476 8 H 0.057 0.943 9 C 0.030 3.970 10 C 0.078 3.922 11 N -0.528 5.528 12 C 0.034 3.966 13 C -0.108 4.108 14 C -0.130 4.130 15 C 0.179 3.821 16 H 0.085 0.915 17 N -0.625 5.625 18 C 0.092 3.908 19 C 0.095 3.905 20 N -0.750 5.750 21 C 0.699 3.301 22 O -0.569 6.569 23 C 0.054 3.946 24 C -0.204 4.204 25 C -0.216 4.216 26 H 0.262 0.738 27 H 0.034 0.966 28 H 0.129 0.871 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.425 0.575 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 2.791 12.487 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.028 3.972 10 C -0.048 4.048 11 N -0.251 5.251 12 C -0.094 4.094 13 C -0.147 4.147 14 C -0.169 4.169 15 C 0.077 3.923 16 H 0.103 0.897 17 N -0.363 5.363 18 C -0.032 4.032 19 C -0.031 4.031 20 N -0.413 5.413 21 C 0.399 3.601 22 O -0.446 6.446 23 C -0.075 4.075 24 C -0.243 4.243 25 C -0.253 4.253 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.147 0.853 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.265 0.735 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.309 2.500 12.570 13.873 hybrid contribution 1.474 0.770 -0.881 1.882 sum 6.783 3.270 11.689 13.905 Atomic orbital electron populations 1.69799 1.05907 1.26762 1.48296 1.24830 0.94498 0.98567 0.94716 0.86891 0.80096 0.83585 0.79050 1.20500 1.21359 1.19748 1.20395 0.97528 0.90280 1.43102 0.92449 1.19660 0.95403 0.87769 0.94391 1.22115 0.95017 1.03516 0.84191 1.62379 1.26544 1.06616 1.29555 1.22421 0.98891 0.92921 0.95154 1.21504 0.97225 0.98017 0.97933 1.21945 0.99173 0.95385 1.00370 1.21018 0.84969 0.86771 0.99572 0.89731 1.47256 1.20179 1.20900 1.48004 1.22326 0.97308 0.86085 0.97516 1.22251 0.94226 0.92889 0.93685 1.45127 1.23350 1.21559 1.51306 1.15916 0.80665 0.83158 0.80362 1.90969 1.78191 1.31602 1.43797 1.22537 0.94271 0.97394 0.93283 1.22930 0.97711 1.07885 0.95781 1.23063 0.95953 1.04011 1.02264 0.92738 0.94708 0.85339 0.93035 0.92184 0.92238 0.91864 0.90453 0.93018 0.90350 0.90424 0.90495 0.90561 0.73478 0.90596 0.89658 0.91967 0.90830 0.91011 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.88 10.92 55.43 0.61 -23.28 16 2 C 0.08 2.06 3.66 -17.82 -0.07 2.00 16 3 Si 0.88 21.25 29.00 -169.99 -4.93 16.32 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.48 -13.18 6.44 -34.44 -0.22 -13.40 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 C 0.03 0.75 1.12 -155.66 -0.17 0.57 16 10 C 0.08 1.88 5.34 -3.82 -0.02 1.85 16 11 N -0.53 -11.25 4.86 -234.66 -1.14 -12.40 16 12 C 0.03 0.65 4.64 -3.83 -0.02 0.63 16 13 C -0.11 -1.70 6.09 -26.65 -0.16 -1.86 16 14 C -0.13 -2.17 5.33 -26.61 -0.14 -2.32 16 15 C 0.18 3.22 2.94 -67.85 -0.20 3.02 16 16 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 17 N -0.62 -10.59 2.85 -171.10 -0.49 -11.08 16 18 C 0.09 1.09 7.65 -3.16 -0.02 1.07 16 19 C 0.10 0.98 8.06 -3.16 -0.03 0.95 16 20 N -0.75 -10.68 6.37 -64.70 -0.41 -11.09 16 21 C 0.70 13.22 8.06 -88.39 -0.71 12.51 16 22 O -0.57 -13.25 14.97 5.29 0.08 -13.17 16 23 C 0.05 1.19 3.27 -3.83 -0.01 1.18 16 24 C -0.20 -4.91 9.88 -26.74 -0.26 -5.17 16 25 C -0.22 -5.04 8.46 -26.73 -0.23 -5.27 16 26 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 27 H 0.03 0.79 7.68 -51.93 -0.40 0.39 16 28 H 0.13 3.41 5.25 -51.93 -0.27 3.14 16 29 H 0.05 1.06 4.76 -51.93 -0.25 0.82 16 30 H 0.06 1.06 7.96 -51.93 -0.41 0.65 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.52 6.73 -51.93 -0.35 1.17 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.42 5.20 8.96 -40.82 -0.37 4.83 16 40 H 0.08 1.89 5.90 -51.93 -0.31 1.58 16 41 H 0.09 2.19 4.61 -51.93 -0.24 1.95 16 42 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 43 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 44 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 45 H 0.07 1.58 5.73 -51.93 -0.30 1.29 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -31.63 334.50 -10.60 -42.23 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.09 Total: 11.66 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.27 Total: -4.24 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -1.43 Total: -57.85 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.93 Total: 16.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.63 -10.60 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.796 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds