Wall clock time and date at job start Tue Mar 31 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99694 * 2 1 4 4 H 1.48493 * 109.47150 * 240.00004 * 3 2 1 5 5 H 1.48501 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46764 * 120.00415 * 3 2 1 7 7 C 1.37876 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00489 * 159.68307 * 7 2 1 9 9 C 1.50702 * 119.99862 * 339.68916 * 7 2 1 10 10 C 1.53006 * 115.54901 * 326.05043 * 9 7 2 11 11 N 1.46906 * 109.47042 * 281.04058 * 10 9 7 12 12 C 1.46843 * 110.99924 * 283.89694 * 11 10 9 13 13 C 1.53040 * 109.52349 * 185.83921 * 12 11 10 14 14 C 1.53119 * 109.27830 * 300.81790 * 13 12 11 15 15 C 1.53120 * 109.15989 * 57.65179 * 14 13 12 16 16 H 1.08999 * 109.50419 * 62.32730 * 15 14 13 17 17 N 1.46498 * 109.50278 * 182.40358 * 15 14 13 18 18 C 1.47049 * 125.41159 * 240.02521 * 17 15 14 19 19 C 1.54111 * 103.86076 * 180.02562 * 18 17 15 20 20 N 1.47044 * 103.86429 * 0.02562 * 19 18 17 21 21 C 1.33948 * 109.17892 * 0.02562 * 20 19 18 22 22 O 1.21587 * 123.04271 * 179.97438 * 21 20 19 23 23 C 1.46849 * 110.99747 * 48.10149 * 11 10 9 24 24 C 1.52997 * 117.52281 * 111.75213 * 9 7 2 25 25 C 1.52995 * 60.00099 * 107.47721 * 24 9 7 26 26 H 0.97001 * 120.00222 * 5.01733 * 1 2 3 27 27 H 1.08996 * 109.47053 * 161.04299 * 10 9 7 28 28 H 1.08994 * 109.47289 * 41.03799 * 10 9 7 29 29 H 1.08996 * 109.46529 * 65.82185 * 12 11 10 30 30 H 1.09001 * 109.45846 * 305.85032 * 12 11 10 31 31 H 1.08998 * 109.50167 * 180.87600 * 13 12 11 32 32 H 1.09003 * 109.53231 * 60.77823 * 13 12 11 33 33 H 1.08997 * 109.52212 * 297.75216 * 14 13 12 34 34 H 1.08998 * 109.57660 * 177.59124 * 14 13 12 35 35 H 1.09002 * 110.55062 * 298.59460 * 18 17 15 36 36 H 1.08999 * 110.55061 * 61.40730 * 18 17 15 37 37 H 1.09004 * 110.54677 * 241.40304 * 19 18 17 38 38 H 1.09001 * 110.54744 * 118.59849 * 19 18 17 39 39 H 0.97004 * 125.41619 * 180.26530 * 20 19 18 40 40 H 1.09002 * 109.46533 * 54.14757 * 23 11 10 41 41 H 1.09001 * 109.46600 * 294.17393 * 23 11 10 42 42 H 1.08997 * 117.49809 * 214.97098 * 24 9 7 43 43 H 1.09005 * 117.49152 * 359.97438 * 24 9 7 44 44 H 1.08996 * 117.50312 * 252.51013 * 25 24 9 45 45 H 1.09004 * 117.49463 * 107.49040 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0342 -1.2230 -0.3253 9 6 1.3214 -2.4588 0.4519 10 6 0.2931 -2.2889 1.5721 11 7 0.9881 -2.1697 2.8609 12 6 1.4731 -3.4775 3.3200 13 6 2.0605 -3.3401 4.7266 14 6 3.2106 -2.3297 4.6976 15 6 2.6896 -0.9901 4.1700 16 1 1.9268 -0.6044 4.8464 17 7 3.7964 -0.0340 4.0850 18 6 3.8720 1.2478 4.8016 19 6 5.2230 1.8407 4.3560 20 7 5.7647 0.8302 3.4353 21 6 4.8993 -0.1878 3.3406 22 8 5.0974 -1.1636 2.6427 23 6 2.0840 -1.1956 2.7796 24 6 1.0440 -3.5295 -0.6051 25 6 2.1426 -3.7496 0.4366 26 1 -0.4850 0.8368 -0.0735 27 1 -0.3669 -3.1560 1.5941 28 1 -0.2951 -1.3891 1.3920 29 1 2.2432 -3.8390 2.6386 30 1 0.6446 -4.1854 3.3401 31 1 2.4344 -4.3078 5.0608 32 1 1.2875 -2.9921 5.4119 33 1 4.0011 -2.6964 4.0429 34 1 3.6048 -2.1961 5.7050 35 1 3.0514 1.9011 4.5048 36 1 3.8620 1.0849 5.8793 37 1 5.8842 1.9721 5.2126 38 1 5.0729 2.7881 3.8384 39 1 6.6154 0.8896 2.9729 40 1 1.6992 -0.2462 2.4072 41 1 2.8513 -1.5678 2.1008 42 1 0.1290 -4.1128 -0.5026 43 1 1.3553 -3.3190 -1.6283 44 1 3.1769 -3.6841 0.0990 45 1 1.9504 -4.4778 1.2246 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602783940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:37 Heat of formation + Delta-G solvation = 9.441950 kcal Electronic energy + Delta-G solvation = -26278.080544 eV Core-core repulsion = 22910.315290 eV Total energy + Delta-G solvation = -3367.765254 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03766 -40.29579 -37.72295 -37.27609 -34.93431 -34.37450 -33.05809 -30.79161 -29.28714 -27.89101 -27.38436 -24.41361 -23.81885 -23.65729 -23.12522 -21.45937 -20.91133 -20.07402 -18.64249 -18.18398 -17.33659 -16.98628 -16.77855 -16.11314 -15.77542 -15.64736 -15.53471 -15.08275 -14.98247 -14.67723 -14.49308 -14.34697 -13.77947 -13.59710 -13.42510 -13.18381 -13.04973 -12.91248 -12.79153 -12.62262 -12.33748 -12.10660 -12.04177 -11.71880 -11.57921 -11.40683 -11.24080 -11.01277 -10.83167 -10.67618 -10.22959 -9.93909 -9.36776 -8.83272 -8.13989 -6.08875 1.27685 1.29626 1.40345 1.67662 2.23196 2.35518 2.89032 3.05868 3.42973 3.60713 3.66289 3.91355 4.01026 4.15979 4.20184 4.22468 4.33922 4.46587 4.52770 4.57449 4.63422 4.69964 4.77746 4.79349 4.85778 4.91290 4.94672 4.97521 5.07754 5.10499 5.13626 5.23596 5.25710 5.43876 5.48758 5.53163 5.59709 5.69721 5.87853 6.06977 6.24538 6.36247 6.44098 6.63384 6.68788 6.79980 7.41213 7.68926 8.86302 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.008953 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.001446 B = 3126.630903 C = 4301.633937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.051 3.949 3 Si 0.922 3.078 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.022 0.978 9 C 0.012 3.988 10 C 0.086 3.914 11 N -0.522 5.522 12 C 0.032 3.968 13 C -0.100 4.100 14 C -0.121 4.121 15 C 0.181 3.819 16 H 0.108 0.892 17 N -0.632 5.632 18 C 0.082 3.918 19 C 0.095 3.905 20 N -0.746 5.746 21 C 0.683 3.317 22 O -0.628 6.628 23 C 0.069 3.931 24 C -0.204 4.204 25 C -0.199 4.199 26 H 0.266 0.734 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.431 0.569 40 H 0.041 0.959 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 3.601 15.547 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.150 4.150 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.040 0.960 9 C 0.010 3.990 10 C -0.042 4.042 11 N -0.245 5.245 12 C -0.096 4.096 13 C -0.138 4.138 14 C -0.160 4.160 15 C 0.078 3.922 16 H 0.126 0.874 17 N -0.369 5.369 18 C -0.040 4.040 19 C -0.029 4.029 20 N -0.408 5.408 21 C 0.383 3.617 22 O -0.509 6.509 23 C -0.060 4.060 24 C -0.242 4.242 25 C -0.236 4.236 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.273 0.727 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.124 3.367 15.666 16.823 hybrid contribution 1.565 0.538 -1.858 2.489 sum 6.690 3.905 13.808 15.832 Atomic orbital electron populations 1.69873 1.06471 1.27401 1.48361 1.25208 0.95094 1.00435 0.94262 0.86184 0.79264 0.81265 0.78394 1.21476 1.19636 1.19730 1.20292 0.96013 0.92298 1.44233 0.95990 1.19730 0.96433 0.87413 0.95433 1.21888 0.94694 1.02556 0.85021 1.62391 1.26342 1.08012 1.27742 1.22519 0.98836 0.91582 0.96688 1.21492 0.97160 0.99191 0.95940 1.21856 0.98549 0.94674 1.00908 1.20943 0.85849 0.88313 0.97102 0.87418 1.47344 1.19091 1.22406 1.48097 1.22747 0.98289 0.83767 0.99182 1.22605 0.93989 0.91944 0.94354 1.45162 1.22927 1.21217 1.51499 1.16349 0.81755 0.83392 0.80238 1.90923 1.79565 1.34198 1.46222 1.22207 0.92959 0.95533 0.95342 1.22946 0.98672 1.07640 0.94979 1.22971 0.94637 1.03601 1.02389 0.92454 0.93652 0.87887 0.95410 0.90628 0.89715 0.89770 0.93992 0.90077 0.90192 0.86734 0.86367 0.89191 0.72727 0.94063 0.93776 0.89936 0.92183 0.93002 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.33 10.92 21.45 0.23 -49.09 16 2 C 0.05 2.86 3.66 84.65 0.31 3.17 16 3 Si 0.92 44.71 29.00 68.60 1.99 46.70 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.49 -28.53 6.44 25.60 0.16 -28.36 16 8 H 0.02 1.39 7.89 -2.91 -0.02 1.37 16 9 C 0.01 0.61 1.12 -52.93 -0.06 0.55 16 10 C 0.09 4.15 5.34 86.30 0.46 4.61 16 11 N -0.52 -22.08 4.86 -896.34 -4.36 -26.44 16 12 C 0.03 1.15 4.64 86.33 0.40 1.55 16 13 C -0.10 -2.82 6.09 30.65 0.19 -2.63 16 14 C -0.12 -3.83 5.33 30.67 0.16 -3.67 16 15 C 0.18 6.27 2.94 45.04 0.13 6.40 16 16 H 0.11 3.22 8.10 -2.39 -0.02 3.21 16 17 N -0.63 -20.60 2.85 -813.97 -2.32 -22.92 16 18 C 0.08 1.69 7.65 86.65 0.66 2.36 16 19 C 0.09 1.63 8.06 86.65 0.70 2.32 16 20 N -0.75 -20.32 6.37 -477.34 -3.04 -23.36 16 21 C 0.68 25.91 8.06 179.57 1.45 27.35 16 22 O -0.63 -30.67 14.97 -3.99 -0.06 -30.73 16 23 C 0.07 3.09 3.27 86.33 0.28 3.37 16 24 C -0.20 -9.95 9.88 30.59 0.30 -9.65 16 25 C -0.20 -9.55 8.46 30.59 0.26 -9.29 16 26 H 0.27 14.08 8.32 -92.71 -0.77 13.31 16 27 H 0.05 2.04 7.68 -2.39 -0.02 2.02 16 28 H 0.10 5.55 5.25 -2.39 -0.01 5.54 16 29 H 0.03 1.15 4.76 -2.39 -0.01 1.13 16 30 H 0.08 2.49 7.96 -2.39 -0.02 2.47 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.65 6.73 -2.39 -0.02 1.63 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.43 10.26 8.96 -92.71 -0.83 9.42 16 40 H 0.04 2.09 5.90 -2.39 -0.01 2.08 16 41 H 0.04 2.37 4.61 -2.39 -0.01 2.36 16 42 H 0.08 3.65 8.09 -2.39 -0.02 3.63 16 43 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 44 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.10 4.15 5.73 -2.39 -0.01 4.14 16 Total: -1.00 -73.74 334.50 -1.97 -75.71 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.17 Total: 32.05 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.41 Total: -1.91 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -9.48 Total: -121.82 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.99 Total: 46.70 kcal Total: -73.74 -1.97 -75.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.151 kcal (2) G-P(sol) polarization free energy of solvation -73.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds