Wall clock time and date at job start Tue Mar 31 2020 07:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48498 * 109.46926 * 274.80056 * 3 2 1 5 5 H 1.48504 * 109.47158 * 34.80262 * 3 2 1 6 6 H 1.48499 * 109.47233 * 154.80204 * 3 2 1 7 7 C 1.37880 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00259 * 4.70821 * 7 2 1 9 9 C 1.50703 * 119.99570 * 184.70001 * 7 2 1 10 10 C 1.52997 * 115.55784 * 88.69512 * 9 7 2 11 11 N 1.46898 * 109.47367 * 79.09713 * 10 9 7 12 12 C 1.46848 * 111.00066 * 72.46485 * 11 10 9 13 13 C 1.53043 * 109.52400 * 174.16243 * 12 11 10 14 14 C 1.53120 * 109.27736 * 59.17390 * 13 12 11 15 15 C 1.53120 * 109.16191 * 302.34862 * 14 13 12 16 16 H 1.09001 * 109.50077 * 297.67041 * 15 14 13 17 17 N 1.46506 * 109.49970 * 177.59737 * 15 14 13 18 18 C 1.47047 * 125.40860 * 124.76343 * 17 15 14 19 19 C 1.54107 * 103.86236 * 179.97438 * 18 17 15 20 20 N 1.47051 * 103.85958 * 0.02562 * 19 18 17 21 21 C 1.33947 * 125.40762 * 304.45786 * 17 15 14 22 22 O 1.21586 * 123.04491 * 359.97438 * 21 17 15 23 23 C 1.46848 * 111.00125 * 308.25154 * 11 10 9 24 24 C 1.53004 * 117.49798 * 234.37798 * 9 7 2 25 25 C 1.52999 * 60.00005 * 107.49184 * 24 9 7 26 26 H 0.97001 * 119.99986 * 355.00235 * 1 2 3 27 27 H 1.09001 * 109.47081 * 199.09166 * 10 9 7 28 28 H 1.08996 * 109.47493 * 319.09645 * 10 9 7 29 29 H 1.09005 * 109.46269 * 294.17577 * 12 11 10 30 30 H 1.08994 * 109.46474 * 54.14351 * 12 11 10 31 31 H 1.08994 * 109.50397 * 179.11919 * 13 12 11 32 32 H 1.09001 * 109.49850 * 299.23865 * 13 12 11 33 33 H 1.09006 * 109.51872 * 62.25467 * 14 13 12 34 34 H 1.09001 * 109.52216 * 182.43794 * 14 13 12 35 35 H 1.09002 * 110.55120 * 298.59138 * 18 17 15 36 36 H 1.09002 * 110.54853 * 61.26403 * 18 17 15 37 37 H 1.09003 * 110.54985 * 118.59404 * 19 18 17 38 38 H 1.09001 * 110.54832 * 241.26195 * 19 18 17 39 39 H 0.97004 * 125.40840 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.45948 * 305.85972 * 23 11 10 41 41 H 1.08999 * 109.46036 * 65.82438 * 23 11 10 42 42 H 1.09005 * 117.49748 * 0.02562 * 24 9 7 43 43 H 1.08999 * 117.49998 * 214.98300 * 24 9 7 44 44 H 1.08996 * 117.49660 * 107.48537 * 25 24 9 45 45 H 1.08992 * 117.50283 * 252.51275 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3952 2.1050 -1.3952 5 1 1.5010 2.6213 0.7991 6 1 3.5938 1.4130 0.5961 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1278 -0.0758 9 6 3.5078 -1.1961 0.1075 10 6 4.0682 -1.2215 1.5309 11 7 4.0037 -2.5911 2.0582 12 6 5.0081 -3.4496 1.4174 13 6 5.0106 -4.8240 2.0906 14 6 3.6197 -5.4516 1.9638 15 6 2.5863 -4.5151 2.5960 16 1 2.8018 -4.3993 3.6581 17 7 1.2456 -5.0815 2.4279 18 6 0.2916 -5.3495 3.5143 19 6 -0.9380 -5.9321 2.7906 20 7 -0.5458 -5.9310 1.3733 21 6 0.6921 -5.4322 1.2596 22 8 1.2629 -5.3115 0.1928 23 6 2.6540 -3.1498 1.9081 24 6 4.2919 -1.9422 -0.9740 25 6 4.2921 -0.4125 -0.9468 26 1 -0.4850 0.8369 0.0732 27 1 5.1050 -0.8852 1.5192 28 1 3.4787 -0.5598 2.1654 29 1 4.7675 -3.5634 0.3604 30 1 5.9931 -2.9939 1.5185 31 1 5.7452 -5.4659 1.6046 32 1 5.2647 -4.7124 3.1447 33 1 3.3814 -5.5991 0.9104 34 1 3.6049 -6.4118 2.4794 35 1 0.7035 -6.0761 4.2147 36 1 0.0313 -4.4259 4.0314 37 1 -1.1367 -6.9482 3.1314 38 1 -1.8109 -5.2988 2.9492 39 1 -1.0975 -6.2389 0.6373 40 1 1.9292 -2.4763 2.3655 41 1 2.4244 -3.2650 0.8488 42 1 3.7205 -2.4312 -1.7630 43 1 5.2071 -2.4511 -0.6714 44 1 5.2074 0.0851 -0.6263 45 1 3.7209 0.1047 -1.7177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602783941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:39 Heat of formation + Delta-G solvation = 33.170216 kcal Electronic energy + Delta-G solvation = -25837.551900 eV Core-core repulsion = 22470.815581 eV Total energy + Delta-G solvation = -3366.736320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77668 -38.87031 -36.30804 -35.88441 -33.66143 -32.00261 -31.87656 -29.56673 -28.14076 -26.53798 -25.38898 -23.11476 -22.80420 -22.21546 -21.80687 -20.12682 -19.01600 -18.54627 -17.39128 -16.41009 -16.22211 -15.58977 -14.89861 -14.75687 -14.36068 -14.28538 -14.04805 -13.71611 -13.44625 -13.27139 -13.15479 -12.72908 -12.47284 -12.35015 -12.20059 -11.88959 -11.83253 -11.33619 -11.07523 -10.75958 -10.70415 -10.48712 -10.38820 -10.22029 -10.13814 -9.89111 -9.52993 -9.24099 -8.93978 -8.86813 -8.54059 -8.44568 -8.18266 -7.31191 -5.99511 -4.00799 2.86844 3.34529 3.44099 3.51219 3.61231 4.11582 4.50541 4.52009 4.71579 4.93724 5.04900 5.15060 5.26723 5.31740 5.36516 5.42628 5.48817 5.59062 5.77928 5.81885 5.88022 6.01519 6.04796 6.12211 6.15658 6.20131 6.24052 6.29413 6.46897 6.53366 6.54728 6.66930 6.75685 6.85703 6.90658 7.08117 7.17081 7.22387 7.33713 7.38329 7.79442 7.88208 7.90871 7.98039 8.60848 9.03022 9.05903 9.62242 11.10567 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.006839 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.058476 B = 4093.348704 C = 5140.280321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.075 3.925 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.479 4.479 8 H 0.084 0.916 9 C -0.025 4.025 10 C 0.094 3.906 11 N -0.528 5.528 12 C 0.035 3.965 13 C -0.108 4.108 14 C -0.134 4.134 15 C 0.184 3.816 16 H 0.085 0.915 17 N -0.625 5.625 18 C 0.093 3.907 19 C 0.095 3.905 20 N -0.748 5.748 21 C 0.700 3.300 22 O -0.572 6.572 23 C 0.048 3.952 24 C -0.188 4.188 25 C -0.201 4.201 26 H 0.262 0.738 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.425 0.575 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -11.604 9.190 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.126 4.126 3 Si 0.707 3.293 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.179 1.179 7 C -0.516 4.516 8 H 0.102 0.898 9 C -0.027 4.027 10 C -0.034 4.034 11 N -0.251 5.251 12 C -0.093 4.093 13 C -0.147 4.147 14 C -0.172 4.172 15 C 0.082 3.918 16 H 0.103 0.897 17 N -0.364 5.364 18 C -0.031 4.031 19 C -0.030 4.030 20 N -0.410 5.410 21 C 0.400 3.600 22 O -0.448 6.448 23 C -0.081 4.081 24 C -0.225 4.225 25 C -0.239 4.239 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.266 0.734 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.337 -11.334 9.147 14.942 hybrid contribution -0.287 0.920 -1.094 1.458 sum 3.050 -10.414 8.053 13.513 Atomic orbital electron populations 1.69898 1.06308 1.26981 1.50610 1.24992 0.94550 0.98820 0.94277 0.86864 0.80936 0.83563 0.77940 1.21074 1.22531 1.17914 1.20461 0.86669 0.94479 1.49988 0.89794 1.20224 0.94876 0.99297 0.88292 1.21891 0.98265 0.88845 0.94428 1.62262 1.04572 1.02423 1.55842 1.22438 0.95659 0.92905 0.98258 1.21502 0.96044 0.96128 1.01000 1.21979 0.94542 0.97491 1.03193 1.20893 0.77464 0.93461 1.00014 0.89667 1.47206 1.16177 1.67019 1.06020 1.22322 0.88534 1.01000 0.91235 1.22247 0.97670 1.01305 0.81804 1.45103 1.17202 1.69995 1.08740 1.15897 0.81523 0.78086 0.84446 1.90964 1.65244 1.60781 1.27803 1.22611 0.90167 0.92444 1.02864 1.23063 1.01672 0.93434 1.04352 1.22930 1.01723 0.94065 1.05220 0.92849 0.93302 0.90927 0.92434 0.91940 0.91979 0.91835 0.89907 0.92845 0.90613 0.90140 0.90638 0.90290 0.73367 0.90546 0.89639 0.89891 0.90332 0.91135 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.95 55.43 0.77 -26.80 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 22.06 25.19 -169.99 -4.28 17.78 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.26 -6.03 6.06 56.52 0.34 -5.68 16 7 C -0.48 -13.36 7.45 -34.44 -0.26 -13.62 16 8 H 0.08 2.67 6.51 -52.49 -0.34 2.32 16 9 C -0.02 -0.58 0.25 -155.66 -0.04 -0.62 16 10 C 0.09 1.98 5.25 -3.83 -0.02 1.96 16 11 N -0.53 -10.06 4.86 -234.67 -1.14 -11.20 16 12 C 0.04 0.60 4.42 -3.83 -0.02 0.58 16 13 C -0.11 -1.54 6.09 -26.65 -0.16 -1.71 16 14 C -0.13 -2.10 5.27 -26.61 -0.14 -2.24 16 15 C 0.18 3.05 2.94 -67.85 -0.20 2.85 16 16 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 17 N -0.63 -9.96 2.85 -171.10 -0.49 -10.45 16 18 C 0.09 1.03 7.66 -3.17 -0.02 1.00 16 19 C 0.10 0.93 8.06 -3.16 -0.03 0.91 16 20 N -0.75 -10.40 6.37 -64.70 -0.41 -10.82 16 21 C 0.70 12.89 8.07 -88.40 -0.71 12.18 16 22 O -0.57 -13.16 14.99 5.29 0.08 -13.08 16 23 C 0.05 0.97 3.35 -3.84 -0.01 0.96 16 24 C -0.19 -4.07 8.31 -26.73 -0.22 -4.29 16 25 C -0.20 -4.47 7.05 -26.73 -0.19 -4.66 16 26 H 0.26 7.59 8.32 -40.82 -0.34 7.25 16 27 H 0.05 0.95 7.76 -51.93 -0.40 0.54 16 28 H 0.07 1.62 8.13 -51.93 -0.42 1.20 16 29 H 0.06 1.09 4.73 -51.93 -0.25 0.84 16 30 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.57 6.43 -51.93 -0.33 1.23 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.43 5.23 8.96 -40.82 -0.37 4.86 16 40 H 0.08 1.76 7.90 -51.93 -0.41 1.35 16 41 H 0.09 2.11 4.18 -51.93 -0.22 1.90 16 42 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 43 H 0.08 1.51 5.75 -51.93 -0.30 1.21 16 44 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 45 H 0.08 1.93 6.71 -51.93 -0.35 1.58 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -33.70 332.82 -9.79 -43.49 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.22 Total: 10.69 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.12 Total: -4.62 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -1.27 Total: -59.26 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.28 Total: 17.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.70 -9.79 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.656 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds