Wall clock time and date at job start Tue Mar 31 2020 07:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48498 * 109.46926 * 274.80056 * 3 2 1 5 5 H 1.48504 * 109.47158 * 34.80262 * 3 2 1 6 6 H 1.48499 * 109.47233 * 154.80204 * 3 2 1 7 7 C 1.37880 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00259 * 4.70821 * 7 2 1 9 9 C 1.50703 * 119.99570 * 184.70001 * 7 2 1 10 10 C 1.52997 * 115.55784 * 88.69512 * 9 7 2 11 11 N 1.46898 * 109.47367 * 79.09713 * 10 9 7 12 12 C 1.46848 * 111.00066 * 72.46485 * 11 10 9 13 13 C 1.53043 * 109.52400 * 174.16243 * 12 11 10 14 14 C 1.53120 * 109.27736 * 59.17390 * 13 12 11 15 15 C 1.53120 * 109.16191 * 302.34862 * 14 13 12 16 16 H 1.09001 * 109.50077 * 297.67041 * 15 14 13 17 17 N 1.46506 * 109.49970 * 177.59737 * 15 14 13 18 18 C 1.47047 * 125.40860 * 124.76343 * 17 15 14 19 19 C 1.54107 * 103.86236 * 179.97438 * 18 17 15 20 20 N 1.47051 * 103.85958 * 0.02562 * 19 18 17 21 21 C 1.33947 * 125.40762 * 304.45786 * 17 15 14 22 22 O 1.21586 * 123.04491 * 359.97438 * 21 17 15 23 23 C 1.46848 * 111.00125 * 308.25154 * 11 10 9 24 24 C 1.53004 * 117.49798 * 234.37798 * 9 7 2 25 25 C 1.52999 * 60.00005 * 107.49184 * 24 9 7 26 26 H 0.97001 * 119.99986 * 355.00235 * 1 2 3 27 27 H 1.09001 * 109.47081 * 199.09166 * 10 9 7 28 28 H 1.08996 * 109.47493 * 319.09645 * 10 9 7 29 29 H 1.09005 * 109.46269 * 294.17577 * 12 11 10 30 30 H 1.08994 * 109.46474 * 54.14351 * 12 11 10 31 31 H 1.08994 * 109.50397 * 179.11919 * 13 12 11 32 32 H 1.09001 * 109.49850 * 299.23865 * 13 12 11 33 33 H 1.09006 * 109.51872 * 62.25467 * 14 13 12 34 34 H 1.09001 * 109.52216 * 182.43794 * 14 13 12 35 35 H 1.09002 * 110.55120 * 298.59138 * 18 17 15 36 36 H 1.09002 * 110.54853 * 61.26403 * 18 17 15 37 37 H 1.09003 * 110.54985 * 118.59404 * 19 18 17 38 38 H 1.09001 * 110.54832 * 241.26195 * 19 18 17 39 39 H 0.97004 * 125.40840 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.45948 * 305.85972 * 23 11 10 41 41 H 1.08999 * 109.46036 * 65.82438 * 23 11 10 42 42 H 1.09005 * 117.49748 * 0.02562 * 24 9 7 43 43 H 1.08999 * 117.49998 * 214.98300 * 24 9 7 44 44 H 1.08996 * 117.49660 * 107.48537 * 25 24 9 45 45 H 1.08992 * 117.50283 * 252.51275 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3952 2.1050 -1.3952 5 1 1.5010 2.6213 0.7991 6 1 3.5938 1.4130 0.5961 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1278 -0.0758 9 6 3.5078 -1.1961 0.1075 10 6 4.0682 -1.2215 1.5309 11 7 4.0037 -2.5911 2.0582 12 6 5.0081 -3.4496 1.4174 13 6 5.0106 -4.8240 2.0906 14 6 3.6197 -5.4516 1.9638 15 6 2.5863 -4.5151 2.5960 16 1 2.8018 -4.3993 3.6581 17 7 1.2456 -5.0815 2.4279 18 6 0.2916 -5.3495 3.5143 19 6 -0.9380 -5.9321 2.7906 20 7 -0.5458 -5.9310 1.3733 21 6 0.6921 -5.4322 1.2596 22 8 1.2629 -5.3115 0.1928 23 6 2.6540 -3.1498 1.9081 24 6 4.2919 -1.9422 -0.9740 25 6 4.2921 -0.4125 -0.9468 26 1 -0.4850 0.8369 0.0732 27 1 5.1050 -0.8852 1.5192 28 1 3.4787 -0.5598 2.1654 29 1 4.7675 -3.5634 0.3604 30 1 5.9931 -2.9939 1.5185 31 1 5.7452 -5.4659 1.6046 32 1 5.2647 -4.7124 3.1447 33 1 3.3814 -5.5991 0.9104 34 1 3.6049 -6.4118 2.4794 35 1 0.7035 -6.0761 4.2147 36 1 0.0313 -4.4259 4.0314 37 1 -1.1367 -6.9482 3.1314 38 1 -1.8109 -5.2988 2.9492 39 1 -1.0975 -6.2389 0.6373 40 1 1.9292 -2.4763 2.3655 41 1 2.4244 -3.2650 0.8488 42 1 3.7205 -2.4312 -1.7630 43 1 5.2071 -2.4511 -0.6714 44 1 5.2074 0.0851 -0.6263 45 1 3.7209 0.1047 -1.7177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602783941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:39 Heat of formation + Delta-G solvation = 6.237710 kcal Electronic energy + Delta-G solvation = -25838.719781 eV Core-core repulsion = 22470.815581 eV Total energy + Delta-G solvation = -3367.904201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.04089 -40.43911 -37.90642 -37.28640 -35.03698 -34.18769 -33.24255 -30.84154 -29.29719 -28.33145 -27.31032 -24.47105 -23.84722 -23.73129 -23.53712 -21.47081 -20.79624 -20.06107 -18.68953 -18.36016 -17.31644 -16.98298 -16.85587 -16.21208 -15.78795 -15.70242 -15.56767 -15.03467 -15.00920 -14.69981 -14.65547 -14.48907 -14.07975 -13.62959 -13.45482 -13.17149 -13.09618 -12.97906 -12.81308 -12.55900 -12.32193 -12.26503 -12.03842 -11.72771 -11.54482 -11.40659 -11.26497 -10.89506 -10.87589 -10.64802 -10.32852 -10.21440 -9.37037 -8.96360 -8.23691 -6.28568 1.33579 1.35999 1.51081 1.67900 2.23536 2.37962 2.98095 3.08534 3.15685 3.42709 3.64360 3.87186 3.98972 4.06403 4.15979 4.21583 4.30138 4.37381 4.39616 4.44390 4.53509 4.62936 4.66306 4.74252 4.78667 4.88290 4.90392 4.97021 5.00721 5.04530 5.08029 5.13330 5.23494 5.28148 5.39138 5.44890 5.48633 5.59566 5.72282 5.86397 6.22517 6.26124 6.33503 6.45450 6.67770 6.77466 7.36175 7.68738 8.90400 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.006839 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.058476 B = 4093.348704 C = 5140.280321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.024 0.976 9 C -0.044 4.044 10 C 0.097 3.903 11 N -0.517 5.517 12 C 0.031 3.969 13 C -0.100 4.100 14 C -0.126 4.126 15 C 0.186 3.814 16 H 0.115 0.885 17 N -0.631 5.631 18 C 0.086 3.914 19 C 0.095 3.905 20 N -0.745 5.745 21 C 0.682 3.318 22 O -0.634 6.634 23 C 0.065 3.935 24 C -0.175 4.175 25 C -0.193 4.193 26 H 0.262 0.738 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.430 0.570 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 -12.111 11.816 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.144 1.144 7 C -0.504 4.504 8 H 0.042 0.958 9 C -0.046 4.046 10 C -0.031 4.031 11 N -0.239 5.239 12 C -0.096 4.096 13 C -0.138 4.138 14 C -0.165 4.165 15 C 0.083 3.917 16 H 0.133 0.867 17 N -0.368 5.368 18 C -0.037 4.037 19 C -0.029 4.029 20 N -0.407 5.407 21 C 0.382 3.618 22 O -0.515 6.515 23 C -0.065 4.065 24 C -0.212 4.212 25 C -0.230 4.230 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.198 -11.877 11.826 17.870 hybrid contribution -1.299 0.953 -1.936 2.519 sum 4.898 -10.924 9.890 15.529 Atomic orbital electron populations 1.70067 1.08363 1.27850 1.53116 1.25874 0.95291 1.02829 0.94311 0.85838 0.80998 0.78433 0.77965 1.21044 1.22644 1.14408 1.20475 0.89457 0.92041 1.48421 0.95777 1.20151 0.92231 1.01695 0.90553 1.21815 0.99422 0.89974 0.91930 1.62323 1.04071 1.02066 1.55469 1.22578 0.95775 0.94351 0.96940 1.21503 0.95411 0.94482 1.02405 1.21896 0.95206 0.98564 1.00795 1.20888 0.78508 0.91315 1.00939 0.86730 1.47332 1.16693 1.66100 1.06701 1.22727 0.88043 1.02352 0.90547 1.22600 0.97430 1.03965 0.78904 1.45162 1.15766 1.68666 1.11058 1.16380 0.82676 0.78355 0.84371 1.90909 1.67085 1.63268 1.30227 1.22240 0.90234 0.94137 0.99846 1.23007 1.02093 0.93613 1.02510 1.23010 1.02312 0.94171 1.03549 0.92954 0.89999 0.92714 0.95016 0.89221 0.89642 0.89396 0.93978 0.90319 0.86735 0.89947 0.86518 0.89180 0.72881 0.94677 0.94650 0.92840 0.86953 0.87379 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.03 13.95 21.45 0.30 -61.73 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 46.14 25.19 68.60 1.73 47.87 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.22 -9.59 6.06 99.48 0.60 -8.99 16 7 C -0.47 -27.67 7.45 25.60 0.19 -27.48 16 8 H 0.02 1.70 6.51 -2.91 -0.02 1.68 16 9 C -0.04 -2.08 0.25 -52.93 -0.01 -2.10 16 10 C 0.10 3.94 5.25 86.30 0.45 4.40 16 11 N -0.52 -19.13 4.86 -896.37 -4.35 -23.48 16 12 C 0.03 0.97 4.42 86.33 0.38 1.36 16 13 C -0.10 -2.51 6.09 30.65 0.19 -2.33 16 14 C -0.13 -3.81 5.27 30.67 0.16 -3.65 16 15 C 0.19 6.11 2.94 45.04 0.13 6.24 16 16 H 0.11 3.08 8.10 -2.39 -0.02 3.06 16 17 N -0.63 -20.28 2.85 -813.98 -2.32 -22.60 16 18 C 0.09 1.73 7.66 86.65 0.66 2.39 16 19 C 0.09 1.69 8.06 86.65 0.70 2.38 16 20 N -0.74 -21.25 6.37 -477.33 -3.04 -24.29 16 21 C 0.68 26.53 8.07 179.57 1.45 27.98 16 22 O -0.63 -31.88 14.99 -3.99 -0.06 -31.94 16 23 C 0.06 2.77 3.35 86.32 0.29 3.06 16 24 C -0.18 -7.56 8.31 30.60 0.25 -7.31 16 25 C -0.19 -8.19 7.05 30.59 0.22 -7.97 16 26 H 0.26 16.01 8.32 -92.71 -0.77 15.24 16 27 H 0.08 2.81 7.76 -2.39 -0.02 2.79 16 28 H 0.05 2.40 8.13 -2.39 -0.02 2.38 16 29 H 0.03 1.17 4.73 -2.38 -0.01 1.16 16 30 H 0.09 2.36 7.99 -2.39 -0.02 2.34 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.64 6.43 -2.38 -0.02 1.63 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.43 11.09 8.96 -92.71 -0.83 10.26 16 40 H 0.03 1.73 7.90 -2.39 -0.02 1.71 16 41 H 0.04 1.90 4.18 -2.39 -0.01 1.89 16 42 H 0.05 2.59 8.14 -2.38 -0.02 2.57 16 43 H 0.11 4.08 5.75 -2.39 -0.01 4.07 16 44 H 0.11 3.83 8.09 -2.39 -0.02 3.81 16 45 H 0.06 2.96 6.71 -2.39 -0.02 2.94 16 Total: -1.00 -83.02 332.82 -2.16 -85.18 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.06 Total: 32.77 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.53 Total: -1.78 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -9.42 Total: -132.10 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.06 Total: -31.94 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.73 Total: 47.87 kcal Total: -83.02 -2.16 -85.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.421 kcal (2) G-P(sol) polarization free energy of solvation -83.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds