Wall clock time and date at job start Tue Mar 31 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 116.99874 * 2 1 4 4 O 1.20831 * 120.00331 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00223 * 179.97438 * 3 2 1 6 6 H 1.09000 * 115.55265 * 60.73119 * 5 3 2 7 7 C 1.53052 * 117.51168 * 206.49290 * 5 3 2 8 8 C 1.52734 * 59.94737 * 107.46417 * 7 5 3 9 9 C 1.53227 * 117.83549 * 252.27299 * 8 7 5 10 10 C 1.53257 * 108.62523 * 163.01954 * 9 8 7 11 11 N 1.46813 * 109.45225 * 55.56383 * 10 9 8 12 12 C 1.46901 * 110.99698 * 170.80545 * 11 10 9 13 13 C 1.53001 * 109.46962 * 175.80756 * 12 11 10 14 14 C 1.50699 * 115.55160 * 53.91577 * 13 12 11 15 15 H 1.07999 * 120.00121 * 215.57426 * 14 13 12 16 16 C 1.37881 * 119.99881 * 35.28893 * 14 13 12 17 17 N 1.31506 * 119.99996 * 355.62758 * 16 14 13 18 18 Si 1.86800 * 119.99792 * 175.62081 * 16 14 13 19 19 H 1.48502 * 109.47383 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47079 * 120.00265 * 18 16 14 21 21 H 1.48504 * 109.47315 * 240.00636 * 18 16 14 22 22 C 1.52995 * 117.49889 * 199.58260 * 13 12 11 23 23 C 1.52993 * 117.49783 * 268.24404 * 13 12 11 24 24 C 1.46810 * 111.58380 * 295.18243 * 11 10 9 25 25 C 1.53212 * 117.84366 * 107.74050 * 8 7 5 26 26 H 1.09004 * 109.46788 * 60.00026 * 1 2 3 27 27 H 1.08995 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47430 * 300.00669 * 1 2 3 29 29 H 1.09002 * 117.50312 * 359.97438 * 7 5 3 30 30 H 1.09002 * 117.50903 * 214.93693 * 7 5 3 31 31 H 1.09001 * 109.61371 * 43.27633 * 9 8 7 32 32 H 1.08999 * 109.75648 * 282.84089 * 9 8 7 33 33 H 1.08998 * 109.47345 * 295.57003 * 10 9 8 34 34 H 1.09002 * 109.47798 * 175.56572 * 10 9 8 35 35 H 1.08993 * 109.47604 * 55.80647 * 12 11 10 36 36 H 1.09004 * 109.47094 * 295.80489 * 12 11 10 37 37 H 0.97005 * 119.99802 * 184.99564 * 17 16 14 38 38 H 1.09002 * 117.50399 * 215.00100 * 22 13 12 39 39 H 1.08998 * 117.49935 * 0.02562 * 22 13 12 40 40 H 1.08999 * 117.50106 * 359.97438 * 23 13 12 41 41 H 1.09001 * 117.49941 * 144.97058 * 23 13 12 42 42 H 1.08996 * 109.47308 * 184.80829 * 24 11 10 43 43 H 1.09000 * 109.47682 * 304.82287 * 24 11 10 44 44 H 1.08996 * 109.61394 * 316.72186 * 25 8 7 45 45 H 1.09001 * 109.60739 * 77.24310 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0613 0.8192 -0.8570 7 6 4.2084 2.5253 0.6061 8 6 4.2766 1.1935 1.3507 9 6 3.4108 1.0295 2.6043 10 6 3.3016 -0.4637 2.9318 11 7 4.6475 -1.0334 3.0709 12 6 4.5872 -2.4039 3.5963 13 6 5.9959 -3.0001 3.6288 14 6 7.0292 -2.1864 4.3645 15 1 8.0481 -2.1575 4.0076 16 6 6.6725 -1.4743 5.4900 17 7 5.4149 -1.4352 5.8722 18 14 7.9759 -0.5651 6.4720 19 1 9.3033 -0.7653 5.8371 20 1 7.6540 0.8843 6.4988 21 1 8.0064 -1.0912 7.8603 22 6 6.1168 -4.5237 3.6972 23 6 6.4590 -3.7858 2.4004 24 6 5.3868 -0.9880 1.8034 25 6 5.6272 0.4723 1.4050 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.5422 3.2910 1.0037 30 1 5.1261 2.8927 0.1468 31 1 2.4171 1.4370 2.4185 32 1 3.8710 1.5548 3.4411 33 1 2.7722 -0.9743 2.1275 34 1 2.7544 -0.5918 3.8658 35 1 3.9502 -3.0117 2.9539 36 1 4.1759 -2.3883 4.6057 37 1 5.1525 -0.8764 6.6205 38 1 6.9438 -4.9377 4.2742 39 1 5.1928 -5.1014 3.7186 40 1 5.7599 -3.8784 1.5693 41 1 7.5109 -3.7139 2.1241 42 1 6.3446 -1.4944 1.9230 43 1 4.8069 -1.4860 1.0263 44 1 6.1021 0.5105 0.4246 45 1 6.2688 0.9523 2.1440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602789216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:50 Heat of formation + Delta-G solvation = -23.072631 kcal Electronic energy + Delta-G solvation = -25252.228999 eV Core-core repulsion = 21850.761056 eV Total energy + Delta-G solvation = -3401.467943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76319 -38.86898 -37.19199 -36.30298 -34.62318 -31.98675 -30.39782 -29.62047 -28.08088 -25.54130 -24.83043 -23.93794 -22.79783 -21.14841 -20.89323 -20.52192 -18.79682 -18.49013 -17.41019 -16.65399 -16.33740 -16.03217 -14.94804 -14.59796 -14.30662 -14.10632 -13.87227 -13.62197 -13.39055 -13.07110 -12.88907 -12.58897 -12.32863 -12.06614 -11.96428 -11.87928 -11.19695 -11.11223 -11.06522 -10.90714 -10.83646 -10.66090 -10.61925 -10.44131 -10.37908 -10.02863 -9.84831 -9.71636 -9.52225 -9.21869 -8.77841 -8.52058 -8.04933 -6.94663 -5.76718 -3.88893 2.16892 2.66713 3.35310 3.44153 3.46951 3.76029 4.49970 4.66953 4.71326 4.83322 4.91713 5.01401 5.06000 5.11339 5.23664 5.30166 5.43421 5.63020 5.67852 5.75586 5.81290 5.98293 6.00028 6.10984 6.13254 6.18849 6.30275 6.33719 6.39551 6.43309 6.51574 6.61399 6.66594 6.72492 6.78665 6.87847 6.95485 6.97927 7.28658 7.38232 7.73269 7.76997 8.13173 8.34511 8.40824 8.63753 9.05852 9.71696 11.16922 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.005163 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.879902 B = 5421.431376 C = 5971.956354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.500 3.500 4 O -0.514 6.514 5 C -0.172 4.172 6 H 0.135 0.865 7 C -0.144 4.144 8 C -0.075 4.075 9 C -0.079 4.079 10 C 0.065 3.935 11 N -0.489 5.489 12 C 0.112 3.888 13 C 0.062 3.938 14 C -0.479 4.479 15 H 0.053 0.947 16 C 0.089 3.911 17 N -0.862 5.862 18 Si 0.887 3.113 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.288 1.288 22 C -0.210 4.210 23 C -0.220 4.220 24 C 0.060 3.940 25 C -0.077 4.077 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.069 0.931 35 H -0.024 1.024 36 H 0.118 0.882 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.008 0.992 44 H 0.059 0.941 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 3.964 -9.963 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.344 3.656 4 O -0.402 6.402 5 C -0.191 4.191 6 H 0.153 0.847 7 C -0.181 4.181 8 C -0.076 4.076 9 C -0.117 4.117 10 C -0.064 4.064 11 N -0.212 5.212 12 C -0.015 4.015 13 C 0.062 3.938 14 C -0.517 4.517 15 H 0.072 0.928 16 C -0.115 4.115 17 N -0.498 5.498 18 Si 0.715 3.285 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.214 1.214 22 C -0.249 4.249 23 C -0.257 4.257 24 C -0.068 4.068 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.088 0.912 35 H -0.006 1.006 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.390 4.570 -9.426 12.270 hybrid contribution -0.093 -0.010 -0.330 0.343 sum -6.482 4.560 -9.756 12.569 Atomic orbital electron populations 1.23257 0.76664 1.03662 1.02304 1.86565 1.23027 1.33261 1.83726 1.22706 0.90599 0.81132 0.71197 1.90635 1.67021 1.36558 1.45995 1.21962 0.87614 1.07541 1.01942 0.84724 1.23157 1.01790 0.91011 1.02104 1.21792 0.97749 0.98010 0.90003 1.21256 0.96739 0.98097 0.95601 1.21914 0.91885 0.93203 0.99404 1.61424 1.12907 1.22137 1.24697 1.21783 0.94843 0.84569 1.00322 1.19046 0.94212 0.87875 0.92711 1.20281 0.93672 1.28859 1.08847 0.92841 1.24754 0.94827 0.95380 0.96570 1.69808 1.15121 1.38203 1.26693 0.86640 0.82204 0.79603 0.80007 1.20125 1.21119 1.21417 1.23018 1.00615 1.00301 1.00961 1.22977 0.99700 1.11294 0.91728 1.22134 1.00484 0.94231 0.89993 1.21305 0.92716 0.96635 1.00832 0.92158 0.88121 0.91891 0.87929 0.87452 0.93215 0.89867 0.96281 0.91209 1.00582 0.86444 0.93434 0.90543 0.92025 0.91901 0.90869 0.88422 0.97348 0.92264 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.35 -4.98 10.42 -39.23 -0.41 -5.38 16 3 C 0.50 7.48 5.97 36.01 0.21 7.69 16 4 O -0.51 -8.57 16.33 -18.75 -0.31 -8.88 16 5 C -0.17 -2.34 5.98 -91.86 -0.55 -2.89 16 6 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 7 C -0.14 -1.83 9.51 -26.84 -0.26 -2.09 16 8 C -0.08 -1.12 2.02 -154.54 -0.31 -1.43 16 9 C -0.08 -1.31 5.52 -26.48 -0.15 -1.46 16 10 C 0.06 1.20 5.49 -3.74 -0.02 1.18 16 11 N -0.49 -10.22 4.03 -234.45 -0.94 -11.17 16 12 C 0.11 2.56 4.05 -3.82 -0.02 2.54 16 13 C 0.06 1.47 1.15 -155.67 -0.18 1.29 16 14 C -0.48 -12.41 8.18 -34.44 -0.28 -12.69 16 15 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 16 C 0.09 2.30 5.30 -17.82 -0.09 2.21 16 17 N -0.86 -22.64 10.10 55.43 0.56 -22.08 16 18 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.21 -4.68 9.96 -26.70 -0.27 -4.94 16 23 C -0.22 -4.65 8.11 -26.70 -0.22 -4.87 16 24 C 0.06 1.13 4.83 -3.74 -0.02 1.12 16 25 C -0.08 -1.23 5.87 -26.49 -0.16 -1.39 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.10 1.35 7.92 -51.93 -0.41 0.94 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.79 6.85 -51.93 -0.36 0.43 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.02 0.35 7.98 -51.93 -0.41 -0.06 16 34 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 35 H -0.02 -0.53 8.08 -51.93 -0.42 -0.95 16 36 H 0.12 2.99 5.96 -51.93 -0.31 2.68 16 37 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.10 2.04 5.04 -51.93 -0.26 1.78 16 43 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 44 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -27.94 356.03 -9.61 -37.55 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.63 Total: 3.25 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.23 Total: -14.27 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: -0.38 Total: -33.25 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.72 Total: -14.26 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.94 -9.61 -37.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.479 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds