Wall clock time and date at job start Tue Mar 31 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 116.99874 * 2 1 4 4 O 1.20831 * 120.00331 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00223 * 179.97438 * 3 2 1 6 6 H 1.09000 * 115.55265 * 60.73119 * 5 3 2 7 7 C 1.53052 * 117.51168 * 206.49290 * 5 3 2 8 8 C 1.52734 * 59.94737 * 107.46417 * 7 5 3 9 9 C 1.53227 * 117.83549 * 252.27299 * 8 7 5 10 10 C 1.53257 * 108.62523 * 163.01954 * 9 8 7 11 11 N 1.46813 * 109.45225 * 55.56383 * 10 9 8 12 12 C 1.46901 * 110.99698 * 170.80545 * 11 10 9 13 13 C 1.53001 * 109.46962 * 175.80756 * 12 11 10 14 14 C 1.50699 * 115.55160 * 53.91577 * 13 12 11 15 15 H 1.07999 * 120.00121 * 215.57426 * 14 13 12 16 16 C 1.37881 * 119.99881 * 35.28893 * 14 13 12 17 17 N 1.31506 * 119.99996 * 355.62758 * 16 14 13 18 18 Si 1.86800 * 119.99792 * 175.62081 * 16 14 13 19 19 H 1.48502 * 109.47383 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47079 * 120.00265 * 18 16 14 21 21 H 1.48504 * 109.47315 * 240.00636 * 18 16 14 22 22 C 1.52995 * 117.49889 * 199.58260 * 13 12 11 23 23 C 1.52993 * 117.49783 * 268.24404 * 13 12 11 24 24 C 1.46810 * 111.58380 * 295.18243 * 11 10 9 25 25 C 1.53212 * 117.84366 * 107.74050 * 8 7 5 26 26 H 1.09004 * 109.46788 * 60.00026 * 1 2 3 27 27 H 1.08995 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47430 * 300.00669 * 1 2 3 29 29 H 1.09002 * 117.50312 * 359.97438 * 7 5 3 30 30 H 1.09002 * 117.50903 * 214.93693 * 7 5 3 31 31 H 1.09001 * 109.61371 * 43.27633 * 9 8 7 32 32 H 1.08999 * 109.75648 * 282.84089 * 9 8 7 33 33 H 1.08998 * 109.47345 * 295.57003 * 10 9 8 34 34 H 1.09002 * 109.47798 * 175.56572 * 10 9 8 35 35 H 1.08993 * 109.47604 * 55.80647 * 12 11 10 36 36 H 1.09004 * 109.47094 * 295.80489 * 12 11 10 37 37 H 0.97005 * 119.99802 * 184.99564 * 17 16 14 38 38 H 1.09002 * 117.50399 * 215.00100 * 22 13 12 39 39 H 1.08998 * 117.49935 * 0.02562 * 22 13 12 40 40 H 1.08999 * 117.50106 * 359.97438 * 23 13 12 41 41 H 1.09001 * 117.49941 * 144.97058 * 23 13 12 42 42 H 1.08996 * 109.47308 * 184.80829 * 24 11 10 43 43 H 1.09000 * 109.47682 * 304.82287 * 24 11 10 44 44 H 1.08996 * 109.61394 * 316.72186 * 25 8 7 45 45 H 1.09001 * 109.60739 * 77.24310 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0613 0.8192 -0.8570 7 6 4.2084 2.5253 0.6061 8 6 4.2766 1.1935 1.3507 9 6 3.4108 1.0295 2.6043 10 6 3.3016 -0.4637 2.9318 11 7 4.6475 -1.0334 3.0709 12 6 4.5872 -2.4039 3.5963 13 6 5.9959 -3.0001 3.6288 14 6 7.0292 -2.1864 4.3645 15 1 8.0481 -2.1575 4.0076 16 6 6.6725 -1.4743 5.4900 17 7 5.4149 -1.4352 5.8722 18 14 7.9759 -0.5651 6.4720 19 1 9.3033 -0.7653 5.8371 20 1 7.6540 0.8843 6.4988 21 1 8.0064 -1.0912 7.8603 22 6 6.1168 -4.5237 3.6972 23 6 6.4590 -3.7858 2.4004 24 6 5.3868 -0.9880 1.8034 25 6 5.6272 0.4723 1.4050 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.5422 3.2910 1.0037 30 1 5.1261 2.8927 0.1468 31 1 2.4171 1.4370 2.4185 32 1 3.8710 1.5548 3.4411 33 1 2.7722 -0.9743 2.1275 34 1 2.7544 -0.5918 3.8658 35 1 3.9502 -3.0117 2.9539 36 1 4.1759 -2.3883 4.6057 37 1 5.1525 -0.8764 6.6205 38 1 6.9438 -4.9377 4.2742 39 1 5.1928 -5.1014 3.7186 40 1 5.7599 -3.8784 1.5693 41 1 7.5109 -3.7139 2.1241 42 1 6.3446 -1.4944 1.9230 43 1 4.8069 -1.4860 1.0263 44 1 6.1021 0.5105 0.4246 45 1 6.2688 0.9523 2.1440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602789216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:49 Heat of formation + Delta-G solvation = -36.491264 kcal Electronic energy + Delta-G solvation = -25252.810875 eV Core-core repulsion = 21850.761056 eV Total energy + Delta-G solvation = -3402.049819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89702 -40.20755 -38.71234 -37.50673 -36.11794 -33.95627 -31.79323 -31.03113 -29.03251 -27.45950 -26.30024 -25.18866 -24.23052 -22.82740 -22.32625 -21.63541 -20.64901 -19.74824 -18.52910 -18.05421 -17.71513 -17.33987 -16.54840 -16.28123 -15.74448 -15.50339 -15.27571 -15.23375 -14.66657 -14.54953 -14.10748 -13.91533 -13.73418 -13.48404 -13.19272 -13.01069 -12.97604 -12.79387 -12.74221 -12.36517 -12.21957 -12.19167 -12.04160 -11.86178 -11.82402 -11.71272 -11.29211 -11.19810 -10.96750 -10.70128 -10.61937 -10.31282 -9.93008 -8.56500 -7.72630 -5.90725 1.03704 1.48184 1.53082 1.60198 1.68119 2.56638 2.67451 3.15609 3.46969 3.58141 3.64498 3.78695 3.81001 3.92714 4.06502 4.24463 4.27829 4.34561 4.40978 4.49424 4.57958 4.61450 4.64317 4.71308 4.75723 4.84167 4.87091 4.92425 4.95254 4.98818 5.02476 5.10796 5.17313 5.20986 5.27689 5.31088 5.34868 5.50380 5.56669 5.62429 5.79024 6.19289 6.51988 6.67036 6.77407 6.87658 7.09453 7.70664 9.17389 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.005163 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.879902 B = 5421.431376 C = 5971.956354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.498 3.502 4 O -0.536 6.536 5 C -0.167 4.167 6 H 0.158 0.842 7 C -0.124 4.124 8 C -0.091 4.091 9 C -0.071 4.071 10 C 0.071 3.929 11 N -0.504 5.504 12 C 0.123 3.877 13 C 0.036 3.964 14 C -0.489 4.489 15 H 0.042 0.958 16 C 0.053 3.947 17 N -0.876 5.876 18 Si 0.937 3.063 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.290 1.290 22 C -0.213 4.213 23 C -0.194 4.194 24 C 0.063 3.937 25 C -0.069 4.069 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.053 0.947 35 H -0.024 1.024 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.012 0.988 44 H 0.091 0.909 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 4.520 -11.732 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.343 3.657 4 O -0.426 6.426 5 C -0.186 4.186 6 H 0.176 0.824 7 C -0.161 4.161 8 C -0.092 4.092 9 C -0.109 4.109 10 C -0.058 4.058 11 N -0.227 5.227 12 C -0.004 4.004 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.060 0.940 16 C -0.150 4.150 17 N -0.513 5.513 18 Si 0.765 3.235 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.216 1.216 22 C -0.252 4.252 23 C -0.231 4.231 24 C -0.065 4.065 25 C -0.106 4.106 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.154 0.846 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.071 0.929 35 H -0.006 1.006 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.030 0.970 44 H 0.109 0.891 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.090 5.114 -11.201 13.737 hybrid contribution -0.240 -0.245 0.220 0.407 sum -6.330 4.869 -10.981 13.578 Atomic orbital electron populations 1.23538 0.74939 1.05512 1.02574 1.86550 1.24879 1.32988 1.83369 1.22992 0.91194 0.81002 0.70558 1.90624 1.67639 1.37235 1.47149 1.22127 0.86879 1.08041 1.01548 0.82422 1.23252 1.02552 0.89896 1.00404 1.21588 0.97176 1.00468 0.89930 1.21103 0.97321 0.96139 0.96293 1.21848 0.90727 0.94602 0.98606 1.61361 1.14222 1.20963 1.26191 1.21486 0.94217 0.85870 0.98842 1.19102 0.94275 0.88383 0.94665 1.20393 0.93604 1.29368 1.09242 0.94013 1.25261 0.96140 0.96262 0.97302 1.69958 1.16006 1.38566 1.26809 0.85862 0.80479 0.78512 0.78671 1.20018 1.21186 1.21636 1.23033 1.00951 0.99427 1.01750 1.22909 1.00152 1.08738 0.91291 1.22084 0.99024 0.96366 0.89055 1.21211 0.93216 0.94264 1.01919 0.91278 0.85578 0.92269 0.88438 0.84609 0.92808 0.91378 0.96101 0.92878 1.00581 0.89381 0.93800 0.91090 0.91021 0.90386 0.90510 0.90462 0.96965 0.89068 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -9.68 10.42 -51.33 -0.54 -10.21 16 3 C 0.50 13.95 5.97 71.24 0.43 14.37 16 4 O -0.54 -17.10 16.33 21.95 0.36 -16.74 16 5 C -0.17 -4.07 5.98 -11.60 -0.07 -4.14 16 6 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 7 C -0.12 -2.79 9.51 30.52 0.29 -2.50 16 8 C -0.09 -2.53 2.02 -52.20 -0.11 -2.64 16 9 C -0.07 -2.31 5.52 30.76 0.17 -2.14 16 10 C 0.07 2.64 5.49 86.41 0.47 3.11 16 11 N -0.50 -21.13 4.03 -895.65 -3.61 -24.74 16 12 C 0.12 5.71 4.05 86.30 0.35 6.06 16 13 C 0.04 1.72 1.15 -52.93 -0.06 1.66 16 14 C -0.49 -25.42 8.18 25.60 0.21 -25.21 16 15 H 0.04 2.22 7.82 -2.91 -0.02 2.19 16 16 C 0.05 2.74 5.30 84.66 0.45 3.19 16 17 N -0.88 -46.85 10.10 21.45 0.22 -46.64 16 18 Si 0.94 42.64 29.54 68.60 2.03 44.66 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 C -0.21 -9.34 9.96 30.62 0.30 -9.03 16 23 C -0.19 -7.94 8.11 30.62 0.25 -7.69 16 24 C 0.06 2.31 4.83 86.41 0.42 2.72 16 25 C -0.07 -2.04 5.87 30.75 0.18 -1.86 16 26 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 27 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.10 2.33 7.92 -2.39 -0.02 2.32 16 30 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.69 6.85 -2.39 -0.02 1.67 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.02 0.77 7.98 -2.39 -0.02 0.75 16 34 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 35 H -0.02 -1.06 8.08 -2.39 -0.02 -1.08 16 36 H 0.09 4.61 5.96 -2.39 -0.01 4.59 16 37 H 0.25 13.16 8.32 -92.70 -0.77 12.39 16 38 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.08 3.16 5.04 -2.39 -0.01 3.14 16 43 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 44 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -59.58 356.03 3.90 -55.68 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.96 Total: 20.33 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.48 Total: -22.35 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -3.39 Total: -71.37 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.18 Total: -26.95 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -59.58 3.90 -55.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.193 kcal (2) G-P(sol) polarization free energy of solvation -59.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds