Wall clock time and date at job start Tue Mar 31 2020 06:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00046 * 2 1 4 4 O 1.20834 * 119.99888 * 359.72202 * 3 2 1 5 5 C 1.50700 * 120.00237 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.55212 * 320.97428 * 5 3 2 7 7 C 1.53034 * 117.50625 * 175.27994 * 5 3 2 8 8 C 1.52741 * 59.94609 * 252.52901 * 7 5 3 9 9 C 1.53211 * 117.84763 * 107.74293 * 8 7 5 10 10 C 1.53265 * 108.62299 * 197.00900 * 9 8 7 11 11 N 1.46815 * 109.44171 * 304.40594 * 10 9 8 12 12 C 1.46897 * 110.99702 * 189.19627 * 11 10 9 13 13 C 1.53005 * 109.46979 * 73.14407 * 12 11 10 14 14 C 1.50699 * 115.54774 * 290.45920 * 13 12 11 15 15 H 1.08006 * 119.99807 * 143.79751 * 14 13 12 16 16 C 1.37880 * 120.00499 * 323.80109 * 14 13 12 17 17 N 1.31524 * 119.99429 * 2.69908 * 16 14 13 18 18 Si 1.86796 * 120.00454 * 182.69821 * 16 14 13 19 19 H 1.48502 * 109.46952 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47245 * 119.99833 * 18 16 14 21 21 H 1.48500 * 109.47195 * 240.00043 * 18 16 14 22 22 C 1.52997 * 117.50115 * 144.79211 * 13 12 11 23 23 C 1.52992 * 117.49910 * 76.12861 * 13 12 11 24 24 C 1.46816 * 111.57479 * 64.82839 * 11 10 9 25 25 C 1.53227 * 117.84221 * 252.26351 * 8 7 5 26 26 H 1.08998 * 109.47001 * 299.99512 * 1 2 3 27 27 H 1.08997 * 109.46937 * 60.00061 * 1 2 3 28 28 H 1.08999 * 109.46851 * 180.02562 * 1 2 3 29 29 H 1.08999 * 117.51045 * 359.97438 * 7 5 3 30 30 H 1.09003 * 117.50514 * 145.02803 * 7 5 3 31 31 H 1.09008 * 109.61217 * 316.74760 * 9 8 7 32 32 H 1.08995 * 109.61628 * 77.26318 * 9 8 7 33 33 H 1.08995 * 109.47454 * 184.41660 * 10 9 8 34 34 H 1.09003 * 109.47973 * 64.39984 * 10 9 8 35 35 H 1.09001 * 109.46864 * 193.13811 * 12 11 10 36 36 H 1.08995 * 109.47345 * 313.14233 * 12 11 10 37 37 H 0.97000 * 119.99477 * 185.00654 * 17 16 14 38 38 H 1.09007 * 117.49533 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.50311 * 145.01636 * 22 13 12 40 40 H 1.09004 * 117.49872 * 214.97846 * 23 13 12 41 41 H 1.09000 * 117.50050 * 359.97438 * 23 13 12 42 42 H 1.08996 * 109.47558 * 175.17981 * 24 11 10 43 43 H 1.09000 * 109.47574 * 55.16393 * 24 11 10 44 44 H 1.09000 * 109.60987 * 282.73223 * 25 8 7 45 45 H 1.08998 * 109.60983 * 43.07388 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0051 5 6 3.5663 1.2749 -0.0006 6 1 4.0761 0.5364 0.6183 7 6 4.2013 2.6628 -0.1122 8 6 4.2500 1.7016 -1.2983 9 6 3.3600 2.0103 -2.5067 10 6 3.2384 0.7439 -3.3612 11 7 4.5791 0.2708 -3.7274 12 6 4.5033 -0.8082 -4.7213 13 6 4.1109 -0.2236 -6.0798 14 6 2.6968 0.2866 -6.1838 15 1 2.4820 1.1663 -6.7725 16 6 1.6771 -0.3693 -5.5273 17 7 1.9458 -1.4088 -4.7676 18 14 -0.0859 0.2182 -5.7169 19 1 -0.1205 1.3970 -6.6194 20 1 -0.9115 -0.8721 -6.2957 21 1 -0.6274 0.5964 -4.3869 22 6 4.7253 -0.8614 -7.3274 23 6 5.1907 0.5221 -6.8664 24 6 5.3429 -0.1535 -2.5476 25 6 5.5967 1.0567 -1.6419 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5306 3.5188 -0.1857 30 1 5.1288 2.8374 0.4331 31 1 2.3716 2.3170 -2.1643 32 1 3.8091 2.8086 -3.0975 33 1 2.6727 0.9685 -4.2654 34 1 2.7226 -0.0301 -2.7927 35 1 5.4746 -1.2961 -4.8027 36 1 3.7553 -1.5373 -4.4098 37 1 1.2229 -1.9144 -4.3642 38 1 5.4088 -1.6978 -7.1805 39 1 4.1069 -0.9116 -8.2236 40 1 4.8781 1.3816 -7.4595 41 1 6.1805 0.5967 -6.4160 42 1 6.2961 -0.5764 -2.8645 43 1 4.7760 -0.9055 -1.9988 44 1 6.2256 1.7784 -2.1633 45 1 6.0921 0.7341 -0.7262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602789217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:51 Heat of formation + Delta-G solvation = -20.975227 kcal Electronic energy + Delta-G solvation = -25588.286141 eV Core-core repulsion = 22186.909148 eV Total energy + Delta-G solvation = -3401.376993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62624 -38.75727 -37.11286 -36.09080 -34.60840 -32.43105 -30.17148 -29.58621 -27.91841 -25.76859 -24.79011 -23.85940 -22.50151 -21.08535 -20.79905 -20.36827 -18.88300 -18.33337 -17.36553 -16.36674 -16.23073 -16.04288 -14.95517 -14.78963 -14.23223 -14.04697 -13.90933 -13.50474 -13.25005 -12.93175 -12.69335 -12.63567 -12.45956 -11.94011 -11.88043 -11.67002 -11.49321 -11.13125 -11.04632 -10.79518 -10.65170 -10.55121 -10.44285 -10.42015 -10.28305 -10.06446 -9.77618 -9.65110 -9.41673 -9.27284 -8.80677 -8.56822 -8.01744 -7.10372 -5.86140 -4.11052 2.30928 2.84233 3.20093 3.29883 3.34278 3.89999 4.29182 4.74853 4.79026 4.88977 4.93448 5.13442 5.16692 5.22223 5.28952 5.33479 5.63070 5.67812 5.71177 5.78526 5.83743 6.01519 6.10988 6.19777 6.24465 6.29921 6.39838 6.46351 6.48530 6.55445 6.60023 6.64374 6.79578 6.83876 6.90139 7.04145 7.18198 7.36544 7.42219 7.58910 7.62582 7.95600 8.10307 8.38894 8.47121 8.54679 8.86112 9.44615 10.87690 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.007281 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.918547 B = 3844.813446 C = 5156.492210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.499 3.501 4 O -0.513 6.513 5 C -0.172 4.172 6 H 0.129 0.871 7 C -0.146 4.146 8 C -0.071 4.071 9 C -0.095 4.095 10 C 0.052 3.948 11 N -0.522 5.522 12 C 0.072 3.928 13 C 0.059 3.941 14 C -0.469 4.469 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.877 5.877 18 Si 0.883 3.117 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.209 4.209 23 C -0.198 4.198 24 C 0.057 3.943 25 C -0.075 4.075 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.117 0.883 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.078 0.922 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 2.128 9.838 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.343 3.657 4 O -0.402 6.402 5 C -0.191 4.191 6 H 0.147 0.853 7 C -0.183 4.183 8 C -0.071 4.071 9 C -0.132 4.132 10 C -0.075 4.075 11 N -0.246 5.246 12 C -0.054 4.054 13 C 0.059 3.941 14 C -0.506 4.506 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.516 5.516 18 Si 0.710 3.290 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.248 4.248 23 C -0.235 4.235 24 C -0.072 4.072 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.134 0.866 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.096 0.904 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.854 2.693 9.801 10.557 hybrid contribution -1.511 -0.500 0.375 1.635 sum 1.343 2.193 10.176 10.496 Atomic orbital electron populations 1.23243 0.76495 1.03655 1.02279 1.86508 1.23192 1.33186 1.83774 1.22593 0.90541 0.81221 0.71365 1.90624 1.66988 1.36500 1.46060 1.21906 0.88148 1.02302 1.06706 0.85300 1.23168 1.01689 0.91720 1.01684 1.21781 0.97349 0.99191 0.88778 1.21552 0.96999 1.00744 0.93951 1.22616 0.90622 0.92881 1.01394 1.61641 1.16359 1.37199 1.09448 1.22252 0.98778 0.93557 0.90846 1.18934 0.91411 0.95970 0.87831 1.20650 0.90362 1.11677 1.27947 0.92168 1.24932 0.98753 0.95342 0.94172 1.69589 1.30870 1.19054 1.32050 0.86659 0.85023 0.79070 0.78213 1.19497 1.20752 1.20759 1.22974 1.04848 0.94559 1.02389 1.22720 0.99693 0.94175 1.06929 1.21992 0.98096 0.94755 0.92381 1.21251 0.93257 0.98013 0.98723 0.92263 0.91767 0.88155 0.87583 0.87741 0.92426 0.90629 0.85338 0.95479 0.96161 0.86598 0.92863 0.91980 0.90774 0.91253 0.91407 0.92008 0.95822 0.90352 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.35 -5.93 10.57 -39.24 -0.41 -6.35 16 3 C 0.50 8.62 6.48 36.01 0.23 8.85 16 4 O -0.51 -9.75 15.16 -18.76 -0.28 -10.03 16 5 C -0.17 -2.55 6.00 -91.88 -0.55 -3.10 16 6 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 7 C -0.15 -1.93 9.51 -26.85 -0.26 -2.19 16 8 C -0.07 -1.11 2.02 -154.54 -0.31 -1.42 16 9 C -0.09 -1.80 5.52 -26.49 -0.15 -1.94 16 10 C 0.05 1.14 4.11 -3.73 -0.02 1.13 16 11 N -0.52 -11.01 4.53 -234.44 -1.06 -12.08 16 12 C 0.07 1.68 4.73 -3.82 -0.02 1.66 16 13 C 0.06 1.43 2.02 -155.66 -0.31 1.12 16 14 C -0.47 -12.11 7.08 -34.44 -0.24 -12.35 16 15 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 16 C 0.07 1.75 3.46 -17.81 -0.06 1.69 16 17 N -0.88 -22.51 8.91 55.43 0.49 -22.02 16 18 Si 0.88 20.20 29.54 -169.99 -5.02 15.18 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.21 -4.70 9.91 -26.69 -0.26 -4.97 16 23 C -0.20 -4.36 9.96 -26.70 -0.27 -4.63 16 24 C 0.06 1.00 5.48 -3.73 -0.02 0.98 16 25 C -0.07 -1.10 5.87 -26.48 -0.16 -1.25 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.11 1.50 7.68 -51.93 -0.40 1.10 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.15 6.25 -51.92 -0.32 0.82 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.13 3.21 3.60 -51.93 -0.19 3.02 16 34 H 0.03 0.65 7.62 -51.93 -0.40 0.26 16 35 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 36 H 0.12 2.98 4.90 -51.93 -0.25 2.73 16 37 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 38 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 39 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 43 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -27.38 350.20 -9.74 -37.12 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.40 Total: 7.75 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.32 Total: -14.85 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: -0.57 Total: -34.10 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.70 Total: -16.38 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.38 -9.74 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.143 kcal (2) G-P(sol) polarization free energy of solvation -27.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds