Wall clock time and date at job start Tue Mar 31 2020 06:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00046 * 2 1 4 4 O 1.20834 * 119.99888 * 359.72202 * 3 2 1 5 5 C 1.50700 * 120.00237 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.55212 * 320.97428 * 5 3 2 7 7 C 1.53034 * 117.50625 * 175.27994 * 5 3 2 8 8 C 1.52741 * 59.94609 * 252.52901 * 7 5 3 9 9 C 1.53211 * 117.84763 * 107.74293 * 8 7 5 10 10 C 1.53265 * 108.62299 * 197.00900 * 9 8 7 11 11 N 1.46815 * 109.44171 * 304.40594 * 10 9 8 12 12 C 1.46897 * 110.99702 * 189.19627 * 11 10 9 13 13 C 1.53005 * 109.46979 * 73.14407 * 12 11 10 14 14 C 1.50699 * 115.54774 * 290.45920 * 13 12 11 15 15 H 1.08006 * 119.99807 * 143.79751 * 14 13 12 16 16 C 1.37880 * 120.00499 * 323.80109 * 14 13 12 17 17 N 1.31524 * 119.99429 * 2.69908 * 16 14 13 18 18 Si 1.86796 * 120.00454 * 182.69821 * 16 14 13 19 19 H 1.48502 * 109.46952 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47245 * 119.99833 * 18 16 14 21 21 H 1.48500 * 109.47195 * 240.00043 * 18 16 14 22 22 C 1.52997 * 117.50115 * 144.79211 * 13 12 11 23 23 C 1.52992 * 117.49910 * 76.12861 * 13 12 11 24 24 C 1.46816 * 111.57479 * 64.82839 * 11 10 9 25 25 C 1.53227 * 117.84221 * 252.26351 * 8 7 5 26 26 H 1.08998 * 109.47001 * 299.99512 * 1 2 3 27 27 H 1.08997 * 109.46937 * 60.00061 * 1 2 3 28 28 H 1.08999 * 109.46851 * 180.02562 * 1 2 3 29 29 H 1.08999 * 117.51045 * 359.97438 * 7 5 3 30 30 H 1.09003 * 117.50514 * 145.02803 * 7 5 3 31 31 H 1.09008 * 109.61217 * 316.74760 * 9 8 7 32 32 H 1.08995 * 109.61628 * 77.26318 * 9 8 7 33 33 H 1.08995 * 109.47454 * 184.41660 * 10 9 8 34 34 H 1.09003 * 109.47973 * 64.39984 * 10 9 8 35 35 H 1.09001 * 109.46864 * 193.13811 * 12 11 10 36 36 H 1.08995 * 109.47345 * 313.14233 * 12 11 10 37 37 H 0.97000 * 119.99477 * 185.00654 * 17 16 14 38 38 H 1.09007 * 117.49533 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.50311 * 145.01636 * 22 13 12 40 40 H 1.09004 * 117.49872 * 214.97846 * 23 13 12 41 41 H 1.09000 * 117.50050 * 359.97438 * 23 13 12 42 42 H 1.08996 * 109.47558 * 175.17981 * 24 11 10 43 43 H 1.09000 * 109.47574 * 55.16393 * 24 11 10 44 44 H 1.09000 * 109.60987 * 282.73223 * 25 8 7 45 45 H 1.08998 * 109.60983 * 43.07388 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0051 5 6 3.5663 1.2749 -0.0006 6 1 4.0761 0.5364 0.6183 7 6 4.2013 2.6628 -0.1122 8 6 4.2500 1.7016 -1.2983 9 6 3.3600 2.0103 -2.5067 10 6 3.2384 0.7439 -3.3612 11 7 4.5791 0.2708 -3.7274 12 6 4.5033 -0.8082 -4.7213 13 6 4.1109 -0.2236 -6.0798 14 6 2.6968 0.2866 -6.1838 15 1 2.4820 1.1663 -6.7725 16 6 1.6771 -0.3693 -5.5273 17 7 1.9458 -1.4088 -4.7676 18 14 -0.0859 0.2182 -5.7169 19 1 -0.1205 1.3970 -6.6194 20 1 -0.9115 -0.8721 -6.2957 21 1 -0.6274 0.5964 -4.3869 22 6 4.7253 -0.8614 -7.3274 23 6 5.1907 0.5221 -6.8664 24 6 5.3429 -0.1535 -2.5476 25 6 5.5967 1.0567 -1.6419 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5306 3.5188 -0.1857 30 1 5.1288 2.8374 0.4331 31 1 2.3716 2.3170 -2.1643 32 1 3.8091 2.8086 -3.0975 33 1 2.6727 0.9685 -4.2654 34 1 2.7226 -0.0301 -2.7927 35 1 5.4746 -1.2961 -4.8027 36 1 3.7553 -1.5373 -4.4098 37 1 1.2229 -1.9144 -4.3642 38 1 5.4088 -1.6978 -7.1805 39 1 4.1069 -0.9116 -8.2236 40 1 4.8781 1.3816 -7.4595 41 1 6.1805 0.5967 -6.4160 42 1 6.2961 -0.5764 -2.8645 43 1 4.7760 -0.9055 -1.9988 44 1 6.2256 1.7784 -2.1633 45 1 6.0921 0.7341 -0.7262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602789217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:51 Heat of formation + Delta-G solvation = -34.873745 kcal Electronic energy + Delta-G solvation = -25588.888826 eV Core-core repulsion = 22186.909148 eV Total energy + Delta-G solvation = -3401.979678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92290 -40.17740 -38.71712 -37.49426 -36.14593 -34.35621 -31.65869 -31.03546 -29.11285 -27.71038 -26.32094 -25.18924 -23.96548 -22.84926 -22.26883 -21.63616 -20.74325 -19.68965 -18.67092 -18.10556 -17.64484 -17.41175 -16.71568 -16.33678 -15.77647 -15.64463 -15.34473 -15.00186 -14.72591 -14.42534 -14.30517 -14.05619 -13.80561 -13.37009 -13.32929 -13.11260 -13.03723 -12.80567 -12.62987 -12.40907 -12.33612 -12.04323 -12.01091 -11.85534 -11.83211 -11.75275 -11.33513 -11.14270 -11.00325 -10.72825 -10.66514 -10.36077 -9.87931 -8.84823 -7.78443 -6.10811 0.99943 1.32333 1.38697 1.46015 1.67533 2.36800 2.74102 3.00633 3.40383 3.57900 3.64582 3.80081 3.87308 3.96796 4.01371 4.15743 4.18823 4.36678 4.49043 4.53515 4.56313 4.64855 4.72947 4.79358 4.80596 4.86187 4.89777 4.94222 5.01659 5.04822 5.06159 5.20965 5.23917 5.25436 5.28882 5.37276 5.43536 5.56415 5.62820 5.64953 5.80294 6.20731 6.52112 6.65149 6.69055 6.75856 6.94760 7.45708 8.89499 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.007281 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.918547 B = 3844.813446 C = 5156.492210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.490 3.510 4 O -0.539 6.539 5 C -0.177 4.177 6 H 0.157 0.843 7 C -0.117 4.117 8 C -0.087 4.087 9 C -0.089 4.089 10 C 0.066 3.934 11 N -0.523 5.523 12 C 0.080 3.920 13 C 0.031 3.969 14 C -0.484 4.484 15 H 0.044 0.956 16 C 0.044 3.956 17 N -0.886 5.886 18 Si 0.924 3.076 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.285 1.285 22 C -0.206 4.206 23 C -0.181 4.181 24 C 0.052 3.948 25 C -0.063 4.063 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.096 0.904 34 H -0.003 1.003 35 H 0.028 0.972 36 H 0.090 0.910 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.010 0.990 44 H 0.085 0.915 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 2.467 11.394 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.336 3.664 4 O -0.430 6.430 5 C -0.196 4.196 6 H 0.174 0.826 7 C -0.153 4.153 8 C -0.087 4.087 9 C -0.126 4.126 10 C -0.061 4.061 11 N -0.247 5.247 12 C -0.047 4.047 13 C 0.030 3.970 14 C -0.521 4.521 15 H 0.062 0.938 16 C -0.156 4.156 17 N -0.525 5.525 18 Si 0.751 3.249 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.212 1.212 22 C -0.244 4.244 23 C -0.218 4.218 24 C -0.076 4.076 25 C -0.100 4.100 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.145 0.855 29 H 0.112 0.888 30 H 0.164 0.836 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.015 0.985 35 H 0.047 0.953 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.104 0.896 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.712 3.025 11.352 12.657 hybrid contribution -2.137 -0.620 -0.136 2.229 sum 2.575 2.404 11.216 11.756 Atomic orbital electron populations 1.23465 0.75281 1.05421 1.02050 1.86502 1.24636 1.33336 1.83549 1.23215 0.91765 0.80887 0.70568 1.90601 1.67837 1.37195 1.47334 1.22151 0.86574 1.04450 1.06415 0.82580 1.23279 1.02613 0.90264 0.99166 1.21666 0.97397 1.01697 0.87972 1.21356 0.97088 0.98921 0.95275 1.22261 0.90679 0.93335 0.99855 1.61654 1.15759 1.36556 1.10759 1.22017 0.98123 0.93555 0.91056 1.19064 0.91258 0.97687 0.88971 1.20713 0.91823 1.11413 1.28175 0.93754 1.25306 1.00831 0.95461 0.93969 1.69742 1.31130 1.19466 1.32185 0.86025 0.82441 0.78717 0.77752 1.19609 1.20223 1.21157 1.22974 1.04727 0.95398 1.01323 1.22685 0.99565 0.93793 1.05802 1.22146 0.97699 0.96252 0.91500 1.21236 0.92697 0.96444 0.99656 0.90580 0.93876 0.85496 0.88761 0.83583 0.94237 0.90827 0.88606 0.98470 0.95324 0.89266 0.93175 0.90576 0.91365 0.91432 0.89899 0.90617 0.97171 0.89606 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.56 113.37 1.20 2.06 16 2 O -0.36 -12.29 10.57 -51.35 -0.54 -12.83 16 3 C 0.49 16.69 6.48 71.24 0.46 17.15 16 4 O -0.54 -20.56 15.16 21.94 0.33 -20.23 16 5 C -0.18 -4.83 6.00 -11.61 -0.07 -4.90 16 6 H 0.16 3.37 8.14 -2.39 -0.02 3.35 16 7 C -0.12 -2.68 9.51 30.52 0.29 -2.39 16 8 C -0.09 -2.52 2.02 -52.20 -0.11 -2.63 16 9 C -0.09 -3.36 5.52 30.75 0.17 -3.19 16 10 C 0.07 2.99 4.11 86.41 0.36 3.34 16 11 N -0.52 -21.84 4.53 -895.62 -4.06 -25.89 16 12 C 0.08 3.71 4.73 86.31 0.41 4.12 16 13 C 0.03 1.50 2.02 -52.93 -0.11 1.39 16 14 C -0.48 -25.60 7.08 25.60 0.18 -25.42 16 15 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 16 C 0.04 2.30 3.46 84.65 0.29 2.60 16 17 N -0.89 -46.79 8.91 21.45 0.19 -46.60 16 18 Si 0.92 42.53 29.54 68.60 2.03 44.55 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 C -0.21 -9.12 9.91 30.62 0.30 -8.82 16 23 C -0.18 -7.81 9.96 30.62 0.30 -7.50 16 24 C 0.05 1.75 5.48 86.41 0.47 2.22 16 25 C -0.06 -1.61 5.87 30.76 0.18 -1.43 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.36 8.13 -2.39 -0.02 1.34 16 28 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.09 2.44 7.68 -2.39 -0.02 2.43 16 30 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 1.61 6.25 -2.38 -0.01 1.60 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.10 4.96 3.60 -2.39 -0.01 4.95 16 34 H 0.00 -0.15 7.62 -2.39 -0.02 -0.17 16 35 H 0.03 1.24 7.70 -2.39 -0.02 1.22 16 36 H 0.09 4.69 4.90 -2.39 -0.01 4.68 16 37 H 0.26 13.24 8.32 -92.71 -0.77 12.47 16 38 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 39 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.89 16 41 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.08 2.31 7.86 -2.39 -0.02 2.29 16 43 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 Total: -1.00 -61.05 350.20 3.25 -57.80 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.97 Total: 26.60 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.34 Total: -23.40 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -3.86 Total: -72.49 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.21 Total: -33.05 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -61.05 3.25 -57.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.925 kcal (2) G-P(sol) polarization free energy of solvation -61.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds