Wall clock time and date at job start Tue Mar 31 2020 07:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99972 * 2 1 4 4 H 1.48500 * 109.46940 * 270.08072 * 3 2 1 5 5 H 1.48493 * 109.46979 * 30.08008 * 3 2 1 6 6 H 1.48496 * 109.47041 * 150.08619 * 3 2 1 7 7 C 1.37876 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00138 * 354.11818 * 7 2 1 9 9 C 1.50706 * 120.00068 * 173.83837 * 7 2 1 10 10 C 1.52995 * 115.55055 * 299.32241 * 9 7 2 11 11 N 1.46900 * 109.47309 * 300.88160 * 10 9 7 12 12 C 1.47843 * 111.00156 * 285.24341 * 11 10 9 13 13 C 1.54909 * 104.79399 * 213.63161 * 12 11 10 14 14 C 1.55144 * 101.65310 * 37.07463 * 13 12 11 15 15 H 1.09001 * 110.85333 * 82.79188 * 14 13 12 16 16 N 1.46497 * 110.70227 * 205.96111 * 14 13 12 17 17 C 1.34775 * 119.99663 * 268.59433 * 16 14 13 18 18 O 1.21583 * 120.00409 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99739 * 180.02562 * 17 16 14 20 20 C 1.46509 * 120.00053 * 179.97438 * 19 17 16 21 21 C 1.52995 * 117.49719 * 223.62586 * 20 19 17 22 22 C 1.52996 * 117.49728 * 154.99771 * 20 19 17 23 23 C 1.47449 * 111.00244 * 164.39780 * 11 10 9 24 24 C 1.53000 * 117.49853 * 153.61735 * 9 7 2 25 25 C 1.52999 * 117.49694 * 84.99327 * 9 7 2 26 26 H 0.97002 * 120.00168 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.88107 * 10 9 7 28 28 H 1.08998 * 109.47582 * 180.88194 * 10 9 7 29 29 H 1.08990 * 110.37266 * 332.46420 * 12 11 10 30 30 H 1.08995 * 110.37220 * 94.80560 * 12 11 10 31 31 H 1.08998 * 110.99523 * 278.97444 * 13 12 11 32 32 H 1.09002 * 111.01554 * 155.17522 * 13 12 11 33 33 H 0.96993 * 120.00115 * 88.59758 * 16 14 13 34 34 H 0.96993 * 120.00039 * 0.02562 * 19 17 16 35 35 H 1.09003 * 115.54723 * 9.33295 * 20 19 17 36 36 H 1.08996 * 117.50219 * 359.97438 * 21 20 19 37 37 H 1.09000 * 117.49579 * 145.02680 * 21 20 19 38 38 H 1.08996 * 117.49772 * 214.97681 * 22 20 19 39 39 H 1.08999 * 117.50135 * 0.02562 * 22 20 19 40 40 H 1.09000 * 109.89143 * 242.66472 * 23 11 10 41 41 H 1.09000 * 109.88814 * 3.85565 * 23 11 10 42 42 H 1.09005 * 117.49364 * 359.97438 * 24 9 7 43 43 H 1.08999 * 117.50053 * 145.01705 * 24 9 7 44 44 H 1.09001 * 117.49491 * 214.97714 * 25 9 7 45 45 H 1.08998 * 117.49863 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4949 2.0474 -1.4001 5 1 1.4474 2.6522 0.7017 6 1 3.5475 1.4397 0.6982 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1268 0.0968 9 6 3.5050 -1.1978 -0.1396 10 6 4.0485 -0.5896 -1.4340 11 7 3.5072 -1.3241 -2.5852 12 6 4.1655 -2.6398 -2.7314 13 6 4.2120 -2.8913 -4.2592 14 6 4.4890 -1.4650 -4.8033 15 1 5.5534 -1.2337 -4.7615 16 7 3.9836 -1.3253 -6.1712 17 6 4.7894 -1.5928 -7.2179 18 8 5.9356 -1.9505 -7.0268 19 7 4.3246 -1.4638 -8.4764 20 6 5.2007 -1.7540 -9.6142 21 6 5.1731 -0.7797 -10.7935 22 6 4.5369 -2.1646 -10.9301 23 6 3.6962 -0.5632 -3.8340 24 6 4.2676 -2.3809 0.4601 25 6 4.3338 -1.0081 1.1325 26 1 -0.4850 0.8401 -0.0004 27 1 3.7494 0.4567 -1.4973 28 1 5.1363 -0.6574 -1.4387 29 1 5.1748 -2.6067 -2.3213 30 1 3.5794 -3.4144 -2.2370 31 1 3.2561 -3.2689 -4.6221 32 1 5.0225 -3.5724 -4.5188 33 1 3.0691 -1.0403 -6.3236 34 1 3.4103 -1.1781 -8.6288 35 1 6.1555 -2.2176 -9.3661 36 1 4.5029 0.0769 -10.7231 37 1 6.1100 -0.6021 -11.3215 38 1 5.0553 -2.8978 -11.5480 39 1 3.4484 -2.2183 -10.9495 40 1 2.7273 -0.3148 -4.2672 41 1 4.2589 0.3481 -3.6313 42 1 3.6839 -3.1563 0.9564 43 1 5.1565 -2.7263 -0.0676 44 1 5.2663 -0.4504 1.0471 45 1 3.7937 -0.8810 2.0707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602810343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:45 Heat of formation + Delta-G solvation = 40.004742 kcal Electronic energy + Delta-G solvation = -23794.975873 eV Core-core repulsion = 20428.535921 eV Total energy + Delta-G solvation = -3366.439952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32028 -38.83107 -37.43885 -36.40028 -34.10492 -32.80550 -31.98778 -30.28334 -28.12259 -26.13181 -24.54374 -22.77699 -22.73773 -21.51626 -21.13463 -20.70411 -20.60127 -18.98968 -18.63236 -16.96317 -16.41954 -15.81711 -15.32239 -15.15208 -14.87877 -14.74033 -14.37215 -13.82626 -13.64844 -13.39242 -13.06721 -12.96080 -12.61612 -12.22036 -11.98743 -11.90901 -11.78425 -11.59162 -11.40632 -11.16685 -10.89480 -10.85890 -10.66004 -10.51124 -10.31042 -10.21998 -10.03254 -9.39957 -9.22938 -9.00069 -8.80052 -8.54078 -8.32004 -7.59462 -5.98057 -3.93508 2.44755 2.96673 3.29757 3.41996 3.47229 3.64114 3.97230 4.42813 4.45525 4.50964 4.60393 4.64450 4.76203 4.97741 5.09285 5.20916 5.25143 5.38621 5.41703 5.53542 5.58480 5.60764 5.69704 5.79281 5.90057 5.96228 6.04455 6.11105 6.17347 6.23110 6.27790 6.30014 6.42554 6.50155 6.55615 6.62381 6.79200 6.80535 7.10333 7.18739 7.55434 7.73110 7.86457 7.91594 8.47225 8.64551 9.05502 9.66901 11.15009 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.003339 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.032207 B = 8384.015755 C = 8898.602253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.454 4.454 8 H 0.074 0.926 9 C 0.012 3.988 10 C 0.085 3.915 11 N -0.492 5.492 12 C 0.053 3.947 13 C -0.139 4.139 14 C 0.142 3.858 15 H 0.094 0.906 16 N -0.731 5.731 17 C 0.709 3.291 18 O -0.591 6.591 19 N -0.721 5.721 20 C 0.103 3.897 21 C -0.198 4.198 22 C -0.192 4.192 23 C 0.036 3.964 24 C -0.185 4.185 25 C -0.200 4.200 26 H 0.261 0.739 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.397 0.603 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -1.968 -18.165 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.121 4.121 3 Si 0.699 3.301 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.092 0.908 9 C 0.010 3.990 10 C -0.042 4.042 11 N -0.215 5.215 12 C -0.075 4.075 13 C -0.179 4.179 14 C 0.036 3.964 15 H 0.112 0.888 16 N -0.385 5.385 17 C 0.409 3.591 18 O -0.469 6.469 19 N -0.374 5.374 20 C -0.004 4.004 21 C -0.237 4.237 22 C -0.231 4.231 23 C -0.093 4.093 24 C -0.222 4.222 25 C -0.239 4.239 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.233 0.767 34 H 0.231 0.769 35 H 0.156 0.844 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.974 -2.240 -17.831 20.087 hybrid contribution 0.290 1.471 -0.376 1.546 sum 9.263 -0.769 -18.207 20.442 Atomic orbital electron populations 1.69898 1.06262 1.26619 1.51242 1.24816 0.94360 0.98566 0.94354 0.87043 0.81091 0.84129 0.77857 1.20870 1.22371 1.18028 1.20120 0.86563 0.94243 1.48221 0.90803 1.19337 0.94709 0.96846 0.88067 1.22103 0.93683 0.97109 0.91354 1.63427 1.55338 1.02081 1.00658 1.23001 0.97202 0.93120 0.94178 1.23135 1.02331 0.96382 0.96009 1.22184 0.99100 0.96028 0.79134 0.88794 1.45127 1.15357 1.73061 1.04987 1.15865 0.84775 0.78186 0.80298 1.90910 1.17459 1.53940 1.84564 1.44485 1.15491 1.73563 1.03844 1.21397 0.96243 1.02302 0.80439 1.23459 1.03457 0.93868 1.02873 1.23404 1.00851 0.98549 1.00286 1.23103 0.99498 0.95841 0.90823 1.22770 1.01680 0.91923 1.05800 1.23086 1.01411 0.99561 0.99794 0.92914 0.91884 0.96643 0.94073 0.89556 0.90417 0.90909 0.76729 0.76868 0.84399 0.88566 0.88035 0.87882 0.88503 0.90290 0.92725 0.89891 0.91357 0.91693 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.08 2.27 5.46 -17.82 -0.10 2.17 16 3 Si 0.87 21.41 24.81 -169.99 -4.22 17.19 16 4 H -0.28 -6.76 6.85 56.52 0.39 -6.38 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.26 -5.99 6.09 56.52 0.34 -5.65 16 7 C -0.45 -12.48 9.20 -34.44 -0.32 -12.80 16 8 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.01 0.27 0.82 -155.66 -0.13 0.14 16 10 C 0.09 1.77 4.11 -3.83 -0.02 1.76 16 11 N -0.49 -9.44 4.91 -231.26 -1.14 -10.58 16 12 C 0.05 0.88 5.66 -2.30 -0.01 0.87 16 13 C -0.14 -1.99 6.76 -24.59 -0.17 -2.16 16 14 C 0.14 2.00 3.31 -66.11 -0.22 1.78 16 15 H 0.09 1.44 7.55 -51.93 -0.39 1.05 16 16 N -0.73 -8.66 5.18 -56.90 -0.29 -8.95 16 17 C 0.71 9.23 8.57 -86.92 -0.74 8.49 16 18 O -0.59 -10.04 15.55 5.29 0.08 -9.96 16 19 N -0.72 -6.82 5.57 -58.67 -0.33 -7.14 16 20 C 0.10 0.91 6.43 -67.93 -0.44 0.47 16 21 C -0.20 -1.32 10.46 -26.73 -0.28 -1.60 16 22 C -0.19 -1.21 10.46 -26.73 -0.28 -1.49 16 23 C 0.04 0.58 6.59 -2.83 -0.02 0.56 16 24 C -0.18 -3.71 9.25 -26.73 -0.25 -3.95 16 25 C -0.20 -4.23 8.57 -26.73 -0.23 -4.45 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.06 1.39 4.14 -51.93 -0.21 1.18 16 28 H 0.02 0.30 7.65 -51.93 -0.40 -0.10 16 29 H 0.04 0.66 7.02 -51.93 -0.36 0.30 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 3.76 8.38 -40.82 -0.34 3.42 16 34 H 0.40 2.68 8.84 -40.82 -0.36 2.32 16 35 H 0.14 1.43 7.40 -51.93 -0.38 1.05 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 41 H 0.05 0.87 7.47 -51.93 -0.39 0.48 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 43 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -32.58 357.17 -10.42 -43.00 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.49 Total: 7.82 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.19 Total: -10.22 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.98 Total: -53.22 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.22 Total: 17.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.58 -10.42 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.001 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds