Wall clock time and date at job start Tue Mar 31 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99972 * 2 1 4 4 H 1.48500 * 109.46940 * 270.08072 * 3 2 1 5 5 H 1.48493 * 109.46979 * 30.08008 * 3 2 1 6 6 H 1.48496 * 109.47041 * 150.08619 * 3 2 1 7 7 C 1.37876 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00138 * 354.11818 * 7 2 1 9 9 C 1.50706 * 120.00068 * 173.83837 * 7 2 1 10 10 C 1.52995 * 115.55055 * 299.32241 * 9 7 2 11 11 N 1.46900 * 109.47309 * 300.88160 * 10 9 7 12 12 C 1.47843 * 111.00156 * 285.24341 * 11 10 9 13 13 C 1.54909 * 104.79399 * 213.63161 * 12 11 10 14 14 C 1.55144 * 101.65310 * 37.07463 * 13 12 11 15 15 H 1.09001 * 110.85333 * 82.79188 * 14 13 12 16 16 N 1.46497 * 110.70227 * 205.96111 * 14 13 12 17 17 C 1.34775 * 119.99663 * 268.59433 * 16 14 13 18 18 O 1.21583 * 120.00409 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99739 * 180.02562 * 17 16 14 20 20 C 1.46509 * 120.00053 * 179.97438 * 19 17 16 21 21 C 1.52995 * 117.49719 * 223.62586 * 20 19 17 22 22 C 1.52996 * 117.49728 * 154.99771 * 20 19 17 23 23 C 1.47449 * 111.00244 * 164.39780 * 11 10 9 24 24 C 1.53000 * 117.49853 * 153.61735 * 9 7 2 25 25 C 1.52999 * 117.49694 * 84.99327 * 9 7 2 26 26 H 0.97002 * 120.00168 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.88107 * 10 9 7 28 28 H 1.08998 * 109.47582 * 180.88194 * 10 9 7 29 29 H 1.08990 * 110.37266 * 332.46420 * 12 11 10 30 30 H 1.08995 * 110.37220 * 94.80560 * 12 11 10 31 31 H 1.08998 * 110.99523 * 278.97444 * 13 12 11 32 32 H 1.09002 * 111.01554 * 155.17522 * 13 12 11 33 33 H 0.96993 * 120.00115 * 88.59758 * 16 14 13 34 34 H 0.96993 * 120.00039 * 0.02562 * 19 17 16 35 35 H 1.09003 * 115.54723 * 9.33295 * 20 19 17 36 36 H 1.08996 * 117.50219 * 359.97438 * 21 20 19 37 37 H 1.09000 * 117.49579 * 145.02680 * 21 20 19 38 38 H 1.08996 * 117.49772 * 214.97681 * 22 20 19 39 39 H 1.08999 * 117.50135 * 0.02562 * 22 20 19 40 40 H 1.09000 * 109.89143 * 242.66472 * 23 11 10 41 41 H 1.09000 * 109.88814 * 3.85565 * 23 11 10 42 42 H 1.09005 * 117.49364 * 359.97438 * 24 9 7 43 43 H 1.08999 * 117.50053 * 145.01705 * 24 9 7 44 44 H 1.09001 * 117.49491 * 214.97714 * 25 9 7 45 45 H 1.08998 * 117.49863 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4949 2.0474 -1.4001 5 1 1.4474 2.6522 0.7017 6 1 3.5475 1.4397 0.6982 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1268 0.0968 9 6 3.5050 -1.1978 -0.1396 10 6 4.0485 -0.5896 -1.4340 11 7 3.5072 -1.3241 -2.5852 12 6 4.1655 -2.6398 -2.7314 13 6 4.2120 -2.8913 -4.2592 14 6 4.4890 -1.4650 -4.8033 15 1 5.5534 -1.2337 -4.7615 16 7 3.9836 -1.3253 -6.1712 17 6 4.7894 -1.5928 -7.2179 18 8 5.9356 -1.9505 -7.0268 19 7 4.3246 -1.4638 -8.4764 20 6 5.2007 -1.7540 -9.6142 21 6 5.1731 -0.7797 -10.7935 22 6 4.5369 -2.1646 -10.9301 23 6 3.6962 -0.5632 -3.8340 24 6 4.2676 -2.3809 0.4601 25 6 4.3338 -1.0081 1.1325 26 1 -0.4850 0.8401 -0.0004 27 1 3.7494 0.4567 -1.4973 28 1 5.1363 -0.6574 -1.4387 29 1 5.1748 -2.6067 -2.3213 30 1 3.5794 -3.4144 -2.2370 31 1 3.2561 -3.2689 -4.6221 32 1 5.0225 -3.5724 -4.5188 33 1 3.0691 -1.0403 -6.3236 34 1 3.4103 -1.1781 -8.6288 35 1 6.1555 -2.2176 -9.3661 36 1 4.5029 0.0769 -10.7231 37 1 6.1100 -0.6021 -11.3215 38 1 5.0553 -2.8978 -11.5480 39 1 3.4484 -2.2183 -10.9495 40 1 2.7273 -0.3148 -4.2672 41 1 4.2589 0.3481 -3.6313 42 1 3.6839 -3.1563 0.9564 43 1 5.1565 -2.7263 -0.0676 44 1 5.2663 -0.4504 1.0471 45 1 3.7937 -0.8810 2.0707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602810343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:44 Heat of formation + Delta-G solvation = 15.843165 kcal Electronic energy + Delta-G solvation = -23796.023598 eV Core-core repulsion = 20428.535921 eV Total energy + Delta-G solvation = -3367.487677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34491 -40.11609 -38.40956 -37.76830 -35.27575 -34.13366 -33.69488 -31.55703 -29.36069 -28.00044 -26.23039 -23.67527 -23.24491 -23.05710 -22.16958 -21.92590 -21.74344 -20.81953 -19.63155 -18.30328 -17.86589 -16.90762 -16.74021 -16.48986 -16.20036 -15.64131 -15.53138 -15.25012 -15.03364 -14.92525 -14.64888 -14.30793 -13.66949 -13.51936 -13.41461 -13.23262 -12.92664 -12.78950 -12.52069 -12.45390 -12.32609 -12.17543 -12.04329 -11.88188 -11.77943 -11.46702 -11.37183 -11.27696 -10.89660 -10.48600 -10.24225 -10.20289 -9.59045 -9.01182 -8.16040 -6.15023 1.34853 1.42724 1.53761 1.56310 2.01545 2.45163 2.91178 3.03300 3.13552 3.27797 3.45247 3.64096 3.77747 3.83477 4.00141 4.08244 4.09779 4.22722 4.28997 4.34562 4.40487 4.52139 4.55609 4.65425 4.75632 4.78530 4.82192 4.87142 4.93531 4.95202 5.03590 5.09018 5.11584 5.19234 5.22870 5.40931 5.49318 5.54773 5.55959 5.81406 5.95030 6.20930 6.29393 6.46998 6.86656 7.02366 7.48781 7.52009 9.00949 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.003339 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.032207 B = 8384.015755 C = 8898.602253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.304 1.304 6 H -0.233 1.233 7 C -0.449 4.449 8 H 0.024 0.976 9 C -0.015 4.015 10 C 0.092 3.908 11 N -0.522 5.522 12 C 0.056 3.944 13 C -0.128 4.128 14 C 0.156 3.844 15 H 0.085 0.915 16 N -0.722 5.722 17 C 0.706 3.294 18 O -0.633 6.633 19 N -0.706 5.706 20 C 0.072 3.928 21 C -0.187 4.187 22 C -0.173 4.173 23 C 0.039 3.961 24 C -0.166 4.166 25 C -0.193 4.193 26 H 0.260 0.740 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.412 0.588 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.475 -1.236 -19.884 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.232 1.232 6 H -0.156 1.156 7 C -0.487 4.487 8 H 0.043 0.957 9 C -0.016 4.016 10 C -0.036 4.036 11 N -0.246 5.246 12 C -0.072 4.072 13 C -0.167 4.167 14 C 0.049 3.951 15 H 0.103 0.897 16 N -0.377 5.377 17 C 0.406 3.594 18 O -0.515 6.515 19 N -0.360 5.360 20 C -0.035 4.035 21 C -0.225 4.225 22 C -0.212 4.212 23 C -0.090 4.090 24 C -0.203 4.203 25 C -0.232 4.232 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.249 0.751 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.826 -1.514 -19.590 22.434 hybrid contribution -0.343 1.119 0.133 1.178 sum 10.483 -0.395 -19.457 22.105 Atomic orbital electron populations 1.70058 1.08256 1.27429 1.53818 1.25584 0.94938 1.02274 0.94342 0.86070 0.80459 0.79304 0.78534 1.19656 1.23225 1.15575 1.20243 0.89342 0.92188 1.46919 0.95740 1.19270 0.92150 1.00027 0.90172 1.21933 0.94900 0.96174 0.90632 1.63318 1.56498 1.03270 1.01524 1.22942 0.97056 0.91586 0.95603 1.23034 1.02581 0.96710 0.94419 1.21871 0.98265 0.95207 0.79792 0.89661 1.44919 1.15873 1.72879 1.04067 1.16007 0.84228 0.77962 0.81235 1.90881 1.19345 1.55943 1.85298 1.44342 1.16241 1.72551 1.02841 1.21457 0.96126 1.04888 0.81026 1.23520 1.04029 0.94205 1.00792 1.23483 1.01506 0.98454 0.97718 1.23067 0.99947 0.95937 0.90017 1.22788 1.01795 0.91134 1.04603 1.23101 1.01684 1.00349 0.98024 0.93080 0.93187 0.94208 0.93072 0.91224 0.90388 0.90260 0.75212 0.75145 0.86568 0.87850 0.87301 0.86855 0.87351 0.90176 0.92356 0.90904 0.88369 0.88906 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.02 1.43 5.46 84.66 0.46 1.89 16 3 Si 0.93 44.04 24.81 68.60 1.70 45.75 16 4 H -0.27 -12.22 6.85 99.48 0.68 -11.53 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.23 -10.02 6.09 99.48 0.61 -9.42 16 7 C -0.45 -25.25 9.20 25.60 0.24 -25.01 16 8 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 9 C -0.01 -0.66 0.82 -52.93 -0.04 -0.71 16 10 C 0.09 3.61 4.11 86.30 0.36 3.97 16 11 N -0.52 -19.42 4.91 -885.56 -4.35 -23.77 16 12 C 0.06 1.78 5.66 86.77 0.49 2.27 16 13 C -0.13 -3.48 6.76 31.98 0.22 -3.26 16 14 C 0.16 4.14 3.31 46.17 0.15 4.29 16 15 H 0.09 2.48 7.55 -2.39 -0.02 2.46 16 16 N -0.72 -15.96 5.18 -452.18 -2.34 -18.31 16 17 C 0.71 17.54 8.57 179.05 1.53 19.08 16 18 O -0.63 -21.22 15.55 -3.98 -0.06 -21.29 16 19 N -0.71 -12.23 5.57 -457.81 -2.55 -14.78 16 20 C 0.07 1.16 6.43 44.99 0.29 1.45 16 21 C -0.19 -2.07 10.46 30.60 0.32 -1.75 16 22 C -0.17 -1.75 10.46 30.60 0.32 -1.43 16 23 C 0.04 1.18 6.59 86.64 0.57 1.76 16 24 C -0.17 -6.35 9.25 30.60 0.28 -6.07 16 25 C -0.19 -7.67 8.57 30.60 0.26 -7.40 16 26 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.05 2.09 4.14 -2.39 -0.01 2.08 16 28 H 0.04 1.38 7.65 -2.39 -0.02 1.36 16 29 H 0.05 1.52 7.02 -2.39 -0.02 1.50 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.41 6.98 8.38 -92.71 -0.78 6.20 16 34 H 0.41 4.63 8.84 -92.71 -0.82 3.81 16 35 H 0.12 2.42 7.40 -2.39 -0.02 2.40 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 2.39 7.72 -2.39 -0.02 2.37 16 41 H 0.06 1.73 7.47 -2.39 -0.02 1.71 16 42 H 0.07 2.91 8.14 -2.38 -0.02 2.90 16 43 H 0.10 3.18 7.53 -2.39 -0.02 3.16 16 44 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -72.46 357.17 -2.58 -75.04 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.73 Total: 27.82 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 5.45 Total: -10.94 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -8.94 Total: -116.37 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.29 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.70 Total: 45.75 kcal Total: -72.46 -2.58 -75.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.883 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds