Wall clock time and date at job start Tue Mar 31 2020 07:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48496 * 109.46713 * 274.98465 * 3 2 1 5 5 H 1.48502 * 109.47056 * 34.98420 * 3 2 1 6 6 H 1.48500 * 109.46919 * 154.98459 * 3 2 1 7 7 C 1.37879 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99835 * 158.87089 * 7 2 1 9 9 C 1.50702 * 120.00115 * 338.87019 * 7 2 1 10 10 C 1.53001 * 115.55012 * 322.42681 * 9 7 2 11 11 N 1.46895 * 109.47294 * 291.24279 * 10 9 7 12 12 C 1.48554 * 110.99772 * 71.86118 * 11 10 9 13 13 C 1.54387 * 104.59665 * 200.95734 * 12 11 10 14 14 C 1.54267 * 105.05659 * 23.85261 * 13 12 11 15 15 H 1.08998 * 110.32190 * 241.10980 * 14 13 12 16 16 N 1.46494 * 110.32405 * 118.99747 * 14 13 12 17 17 C 1.34783 * 120.00158 * 84.75990 * 16 14 13 18 18 O 1.21586 * 119.99454 * 5.01712 * 17 16 14 19 19 N 1.34774 * 120.00364 * 185.01713 * 17 16 14 20 20 C 1.46494 * 119.99808 * 185.02371 * 19 17 16 21 21 C 1.53004 * 117.49723 * 223.61990 * 20 19 17 22 22 C 1.53002 * 117.49820 * 154.99863 * 20 19 17 23 23 C 1.48819 * 110.97207 * 316.44226 * 11 10 9 24 24 C 1.53002 * 117.49739 * 108.10466 * 9 7 2 25 25 C 1.53000 * 117.49580 * 176.76026 * 9 7 2 26 26 H 0.96991 * 119.99791 * 5.05449 * 1 2 3 27 27 H 1.09002 * 109.46407 * 171.24112 * 10 9 7 28 28 H 1.09000 * 109.46633 * 51.24604 * 10 9 7 29 29 H 1.09001 * 110.41389 * 82.18174 * 12 11 10 30 30 H 1.09000 * 110.51574 * 319.78332 * 12 11 10 31 31 H 1.09001 * 110.32518 * 264.96134 * 13 12 11 32 32 H 1.08997 * 110.41104 * 142.78856 * 13 12 11 33 33 H 0.97002 * 120.00239 * 264.76612 * 16 14 13 34 34 H 0.96998 * 120.00020 * 5.02011 * 19 17 16 35 35 H 1.08998 * 115.55323 * 9.32387 * 20 19 17 36 36 H 1.09004 * 117.49551 * 359.97438 * 21 20 19 37 37 H 1.08995 * 117.50160 * 145.02059 * 21 20 19 38 38 H 1.08997 * 117.50018 * 214.97485 * 22 20 19 39 39 H 1.09007 * 117.49822 * 359.97438 * 22 20 19 40 40 H 1.08997 * 110.45317 * 40.32541 * 23 11 10 41 41 H 1.09001 * 110.49674 * 277.79789 * 23 11 10 42 42 H 1.09002 * 117.49425 * 214.99879 * 24 9 7 43 43 H 1.08994 * 117.49754 * 0.02562 * 24 9 7 44 44 H 1.08998 * 117.50363 * 359.97438 * 25 9 7 45 45 H 1.09002 * 117.49798 * 144.97710 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1071 -1.3948 5 1 1.5033 2.6200 0.8027 6 1 3.5955 1.4119 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0301 -1.2257 -0.3366 9 6 1.3270 -2.4551 0.4716 10 6 0.3775 -2.2897 1.6598 11 7 1.1529 -1.9675 2.8651 12 6 1.6845 -0.5818 2.8014 13 6 2.8645 -0.5717 3.7970 14 6 3.3127 -2.0440 3.9023 15 1 3.2041 -2.4004 4.9266 16 7 4.7019 -2.1859 3.4595 17 6 5.7111 -1.9575 4.3231 18 8 5.4700 -1.7231 5.4916 19 7 6.9875 -1.9888 3.8916 20 6 8.0879 -1.8501 4.8486 21 6 9.2505 -0.9343 4.4605 22 6 9.4402 -2.4525 4.4624 23 6 2.3678 -2.8216 2.9610 24 6 0.9596 -3.4973 -0.5867 25 6 2.1195 -3.7605 0.3769 26 1 -0.4849 0.8367 -0.0740 27 1 -0.1714 -3.2181 1.8182 28 1 -0.3255 -1.4827 1.4535 29 1 0.9212 0.1328 3.1094 30 1 2.0346 -0.3529 1.7949 31 1 2.5360 -0.2055 4.7697 32 1 3.6781 0.0454 3.4159 33 1 4.8954 -2.4442 2.5448 34 1 7.1775 -2.1032 2.9473 35 1 7.8035 -1.8845 5.9003 36 1 9.1968 -0.4354 3.4928 37 1 9.7311 -0.3660 5.2568 38 1 10.0457 -2.8830 5.2600 39 1 9.5111 -2.9524 3.4963 40 1 2.8255 -2.9444 1.9794 41 1 2.1190 -3.7925 3.3895 42 1 0.0414 -4.0650 -0.4364 43 1 1.2084 -3.2710 -1.6235 44 1 3.1307 -3.7073 -0.0265 45 1 1.9646 -4.5013 1.1613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602810347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:47 Heat of formation + Delta-G solvation = 52.092394 kcal Electronic energy + Delta-G solvation = -24860.005810 eV Core-core repulsion = 21494.090018 eV Total energy + Delta-G solvation = -3365.915792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06759 -38.84708 -37.27078 -35.79641 -33.67588 -32.68431 -32.38850 -29.71413 -27.76363 -25.82162 -24.68886 -22.59510 -22.47757 -21.63630 -20.92218 -20.30243 -19.66172 -19.15710 -18.28829 -16.67219 -16.29462 -15.66820 -15.15264 -14.85121 -14.57523 -14.50701 -14.21062 -13.88812 -13.48055 -13.07718 -12.88927 -12.62622 -12.31469 -11.85133 -11.78720 -11.64452 -11.22848 -11.18725 -11.05856 -10.78437 -10.69808 -10.63403 -10.50917 -10.47178 -10.19659 -9.98314 -9.79909 -9.72975 -9.11211 -8.94855 -8.78989 -8.50055 -8.09699 -7.22943 -6.29779 -4.19907 2.74897 3.11895 3.22858 3.23160 3.25153 3.83643 4.16239 4.29537 4.61426 4.74069 4.78229 4.80951 5.18704 5.24288 5.38006 5.39811 5.48025 5.58813 5.73422 5.79904 5.85487 6.00160 6.14335 6.20733 6.28044 6.35847 6.43313 6.47687 6.52073 6.55109 6.65545 6.67804 6.87286 6.93065 6.95809 7.12428 7.14743 7.26722 7.32563 7.46714 7.71768 7.95357 8.07545 8.17876 8.30372 8.67653 8.77151 9.25945 10.72098 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.004775 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.429808 B = 5862.832716 C = 6328.615621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.069 3.931 11 N -0.497 5.497 12 C -0.004 4.004 13 C -0.133 4.133 14 C 0.161 3.839 15 H 0.086 0.914 16 N -0.731 5.731 17 C 0.708 3.292 18 O -0.593 6.593 19 N -0.723 5.723 20 C 0.106 3.894 21 C -0.198 4.198 22 C -0.194 4.194 23 C 0.009 3.991 24 C -0.199 4.199 25 C -0.214 4.214 26 H 0.267 0.733 27 H 0.040 0.960 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.397 0.603 34 H 0.397 0.603 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 -3.606 4.942 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.121 4.121 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.026 3.974 10 C -0.059 4.059 11 N -0.220 5.220 12 C -0.131 4.131 13 C -0.172 4.172 14 C 0.056 3.944 15 H 0.105 0.895 16 N -0.385 5.385 17 C 0.408 3.592 18 O -0.471 6.471 19 N -0.376 5.376 20 C -0.001 4.001 21 C -0.237 4.237 22 C -0.233 4.233 23 C -0.120 4.120 24 C -0.238 4.238 25 C -0.251 4.251 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.231 0.769 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.253 -3.335 6.573 13.452 hybrid contribution 1.219 0.759 -1.821 2.319 sum 12.471 -2.576 4.752 13.593 Atomic orbital electron populations 1.69912 1.06034 1.27326 1.45861 1.24897 0.94679 0.98887 0.93670 0.86994 0.80996 0.84120 0.78448 1.20564 1.20237 1.19139 1.20356 0.98436 0.90464 1.44395 0.92052 1.19606 0.95882 0.87784 0.94120 1.21941 0.96348 1.01448 0.86142 1.65784 1.16599 1.02797 1.36780 1.23982 0.95044 0.91158 1.02936 1.22730 0.98721 0.95890 0.99889 1.21587 0.77956 0.95954 0.98883 0.89545 1.45371 1.05528 1.73734 1.13896 1.15895 0.80285 0.77820 0.85220 1.90889 1.83435 1.56489 1.16291 1.44509 1.03973 1.79061 1.10074 1.21353 0.81155 1.02915 0.94686 1.23444 1.03370 0.93132 1.03785 1.23400 1.00050 0.96175 1.03652 1.23767 0.91965 0.96311 0.99931 1.22948 0.96716 1.07580 0.96544 1.22974 0.95824 1.03245 1.03039 0.92289 0.94194 0.86698 0.92466 0.86115 0.92025 0.92078 0.76912 0.76920 0.84517 0.88583 0.88145 0.88028 0.88596 0.89158 0.91481 0.91756 0.90617 0.90858 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.97 11.21 55.43 0.62 -21.35 16 2 C 0.08 2.07 3.40 -17.82 -0.06 2.01 16 3 Si 0.87 19.32 28.34 -169.99 -4.82 14.51 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.50 -12.14 7.12 -34.44 -0.25 -12.39 16 8 H 0.06 1.50 7.90 -52.49 -0.41 1.09 16 9 C 0.03 0.62 1.02 -155.66 -0.16 0.46 16 10 C 0.07 1.55 5.41 -3.83 -0.02 1.53 16 11 N -0.50 -10.33 5.65 -229.74 -1.30 -11.63 16 12 C 0.00 -0.09 5.82 -2.18 -0.01 -0.10 16 13 C -0.13 -2.53 6.77 -25.34 -0.17 -2.71 16 14 C 0.16 2.84 3.37 -66.55 -0.22 2.61 16 15 H 0.09 1.59 7.63 -51.93 -0.40 1.19 16 16 N -0.73 -11.23 5.06 -57.32 -0.29 -11.52 16 17 C 0.71 11.25 8.53 -86.92 -0.74 10.51 16 18 O -0.59 -11.59 15.63 5.29 0.08 -11.51 16 19 N -0.72 -8.72 5.57 -58.68 -0.33 -9.05 16 20 C 0.11 1.15 6.42 -67.93 -0.44 0.71 16 21 C -0.20 -1.73 10.46 -26.73 -0.28 -2.01 16 22 C -0.19 -1.55 10.46 -26.73 -0.28 -1.83 16 23 C 0.01 0.16 4.94 -2.03 -0.01 0.15 16 24 C -0.20 -4.27 9.91 -26.69 -0.26 -4.54 16 25 C -0.21 -4.18 7.15 -26.70 -0.19 -4.37 16 26 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 27 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.12 2.88 5.67 -51.93 -0.29 2.58 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.12 2.77 1.69 -51.93 -0.09 2.68 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 33 H 0.40 5.38 8.36 -40.82 -0.34 5.04 16 34 H 0.40 3.83 8.86 -40.82 -0.36 3.47 16 35 H 0.14 1.67 7.43 -51.93 -0.39 1.29 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.69 3.58 -51.93 -0.19 1.50 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.07 1.28 7.33 -51.93 -0.38 0.90 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -27.54 347.74 -10.93 -38.47 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -7.04 Total: 16.79 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.10 Total: -9.95 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -1.29 Total: -53.55 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.82 Total: 14.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.54 -10.93 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.562 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds