Wall clock time and date at job start Tue Mar 31 2020 07:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48496 * 109.46713 * 274.98465 * 3 2 1 5 5 H 1.48502 * 109.47056 * 34.98420 * 3 2 1 6 6 H 1.48500 * 109.46919 * 154.98459 * 3 2 1 7 7 C 1.37879 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99835 * 158.87089 * 7 2 1 9 9 C 1.50702 * 120.00115 * 338.87019 * 7 2 1 10 10 C 1.53001 * 115.55012 * 322.42681 * 9 7 2 11 11 N 1.46895 * 109.47294 * 291.24279 * 10 9 7 12 12 C 1.48554 * 110.99772 * 71.86118 * 11 10 9 13 13 C 1.54387 * 104.59665 * 200.95734 * 12 11 10 14 14 C 1.54267 * 105.05659 * 23.85261 * 13 12 11 15 15 H 1.08998 * 110.32190 * 241.10980 * 14 13 12 16 16 N 1.46494 * 110.32405 * 118.99747 * 14 13 12 17 17 C 1.34783 * 120.00158 * 84.75990 * 16 14 13 18 18 O 1.21586 * 119.99454 * 5.01712 * 17 16 14 19 19 N 1.34774 * 120.00364 * 185.01713 * 17 16 14 20 20 C 1.46494 * 119.99808 * 185.02371 * 19 17 16 21 21 C 1.53004 * 117.49723 * 223.61990 * 20 19 17 22 22 C 1.53002 * 117.49820 * 154.99863 * 20 19 17 23 23 C 1.48819 * 110.97207 * 316.44226 * 11 10 9 24 24 C 1.53002 * 117.49739 * 108.10466 * 9 7 2 25 25 C 1.53000 * 117.49580 * 176.76026 * 9 7 2 26 26 H 0.96991 * 119.99791 * 5.05449 * 1 2 3 27 27 H 1.09002 * 109.46407 * 171.24112 * 10 9 7 28 28 H 1.09000 * 109.46633 * 51.24604 * 10 9 7 29 29 H 1.09001 * 110.41389 * 82.18174 * 12 11 10 30 30 H 1.09000 * 110.51574 * 319.78332 * 12 11 10 31 31 H 1.09001 * 110.32518 * 264.96134 * 13 12 11 32 32 H 1.08997 * 110.41104 * 142.78856 * 13 12 11 33 33 H 0.97002 * 120.00239 * 264.76612 * 16 14 13 34 34 H 0.96998 * 120.00020 * 5.02011 * 19 17 16 35 35 H 1.08998 * 115.55323 * 9.32387 * 20 19 17 36 36 H 1.09004 * 117.49551 * 359.97438 * 21 20 19 37 37 H 1.08995 * 117.50160 * 145.02059 * 21 20 19 38 38 H 1.08997 * 117.50018 * 214.97485 * 22 20 19 39 39 H 1.09007 * 117.49822 * 359.97438 * 22 20 19 40 40 H 1.08997 * 110.45317 * 40.32541 * 23 11 10 41 41 H 1.09001 * 110.49674 * 277.79789 * 23 11 10 42 42 H 1.09002 * 117.49425 * 214.99879 * 24 9 7 43 43 H 1.08994 * 117.49754 * 0.02562 * 24 9 7 44 44 H 1.08998 * 117.50363 * 359.97438 * 25 9 7 45 45 H 1.09002 * 117.49798 * 144.97710 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1071 -1.3948 5 1 1.5033 2.6200 0.8027 6 1 3.5955 1.4119 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0301 -1.2257 -0.3366 9 6 1.3270 -2.4551 0.4716 10 6 0.3775 -2.2897 1.6598 11 7 1.1529 -1.9675 2.8651 12 6 1.6845 -0.5818 2.8014 13 6 2.8645 -0.5717 3.7970 14 6 3.3127 -2.0440 3.9023 15 1 3.2041 -2.4004 4.9266 16 7 4.7019 -2.1859 3.4595 17 6 5.7111 -1.9575 4.3231 18 8 5.4700 -1.7231 5.4916 19 7 6.9875 -1.9888 3.8916 20 6 8.0879 -1.8501 4.8486 21 6 9.2505 -0.9343 4.4605 22 6 9.4402 -2.4525 4.4624 23 6 2.3678 -2.8216 2.9610 24 6 0.9596 -3.4973 -0.5867 25 6 2.1195 -3.7605 0.3769 26 1 -0.4849 0.8367 -0.0740 27 1 -0.1714 -3.2181 1.8182 28 1 -0.3255 -1.4827 1.4535 29 1 0.9212 0.1328 3.1094 30 1 2.0346 -0.3529 1.7949 31 1 2.5360 -0.2055 4.7697 32 1 3.6781 0.0454 3.4159 33 1 4.8954 -2.4442 2.5448 34 1 7.1775 -2.1032 2.9473 35 1 7.8035 -1.8845 5.9003 36 1 9.1968 -0.4354 3.4928 37 1 9.7311 -0.3660 5.2568 38 1 10.0457 -2.8830 5.2600 39 1 9.5111 -2.9524 3.4963 40 1 2.8255 -2.9444 1.9794 41 1 2.1190 -3.7925 3.3895 42 1 0.0414 -4.0650 -0.4364 43 1 1.2084 -3.2710 -1.6235 44 1 3.1307 -3.7073 -0.0265 45 1 1.9646 -4.5013 1.1613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602810347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:46 Heat of formation + Delta-G solvation = 33.307638 kcal Electronic energy + Delta-G solvation = -24860.820378 eV Core-core repulsion = 21494.090018 eV Total energy + Delta-G solvation = -3366.730360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36056 -40.33293 -38.25971 -37.30347 -35.09228 -34.42845 -33.58855 -31.23633 -29.30555 -27.65466 -26.30785 -23.58780 -23.23879 -23.20650 -22.09365 -21.79351 -21.13566 -20.91410 -19.48335 -18.10168 -17.78035 -16.92151 -16.71934 -16.38453 -15.94459 -15.70618 -15.55910 -15.32341 -15.06725 -14.58360 -14.32361 -13.96791 -13.65363 -13.49574 -12.97990 -12.91102 -12.83613 -12.46028 -12.41656 -12.31739 -12.25593 -12.20923 -12.10949 -11.88143 -11.54137 -11.46086 -11.40557 -11.30083 -10.84805 -10.53517 -10.18067 -9.86758 -9.53795 -8.90853 -8.17585 -6.09560 1.32692 1.42015 1.45822 1.65087 2.07103 2.32888 2.91916 3.05390 3.17743 3.53808 3.70515 3.78536 3.85297 3.95915 4.10482 4.11168 4.25303 4.36707 4.55316 4.65610 4.66345 4.76214 4.79260 4.80247 4.84390 4.89987 4.95198 5.04722 5.08259 5.18261 5.19807 5.24092 5.30807 5.45951 5.48400 5.57116 5.60875 5.62390 5.70255 5.91295 6.01700 6.25102 6.34981 6.51375 6.81833 7.08194 7.37333 7.57995 8.84022 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.004775 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.429808 B = 5862.832716 C = 6328.615621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.004 3.996 10 C 0.076 3.924 11 N -0.502 5.502 12 C -0.003 4.003 13 C -0.128 4.128 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.724 5.724 17 C 0.705 3.295 18 O -0.633 6.633 19 N -0.708 5.708 20 C 0.072 3.928 21 C -0.191 4.191 22 C -0.169 4.169 23 C 0.015 3.985 24 C -0.208 4.208 25 C -0.182 4.182 26 H 0.264 0.736 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.407 0.593 34 H 0.410 0.590 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.407 -4.717 4.883 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.147 4.147 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.052 4.052 11 N -0.225 5.225 12 C -0.131 4.131 13 C -0.167 4.167 14 C 0.066 3.934 15 H 0.098 0.902 16 N -0.379 5.379 17 C 0.405 3.595 18 O -0.515 6.515 19 N -0.362 5.362 20 C -0.035 4.035 21 C -0.229 4.229 22 C -0.207 4.207 23 C -0.113 4.113 24 C -0.247 4.247 25 C -0.219 4.219 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.243 0.757 34 H 0.247 0.753 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.601 -4.461 6.475 15.710 hybrid contribution 0.539 1.088 -1.802 2.173 sum 14.139 -3.372 4.672 15.268 Atomic orbital electron populations 1.70001 1.07015 1.27508 1.47354 1.25292 0.94950 1.00735 0.93684 0.86383 0.80396 0.81839 0.78113 1.20644 1.20798 1.18450 1.20529 0.98170 0.91441 1.43904 0.92477 1.19606 0.97291 0.88259 0.94605 1.21736 0.96168 1.00473 0.86821 1.65755 1.17813 1.02936 1.35948 1.23863 0.95225 0.91269 1.02717 1.22671 0.97720 0.97106 0.99230 1.21319 0.79048 0.94556 0.98453 0.90184 1.45150 1.04649 1.73734 1.14370 1.16039 0.81288 0.77599 0.84609 1.90863 1.84202 1.58337 1.18057 1.44365 1.02908 1.77832 1.11055 1.21458 0.81783 1.06523 0.93718 1.23507 1.01382 0.93921 1.04123 1.23482 0.96977 0.95658 1.04565 1.23755 0.90958 0.96511 1.00065 1.22946 0.98153 1.07508 0.96047 1.22971 0.95586 1.01208 1.02096 0.92590 0.93570 0.89703 0.94199 0.87320 0.91937 0.92410 0.75652 0.75325 0.86513 0.88256 0.87268 0.86571 0.87345 0.89218 0.89943 0.91090 0.91701 0.89748 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.00 11.21 21.45 0.24 -45.76 16 2 C 0.06 2.78 3.40 84.65 0.29 3.07 16 3 Si 0.91 39.58 28.34 68.60 1.94 41.53 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.50 -24.14 7.12 25.60 0.18 -23.96 16 8 H 0.06 2.73 7.90 -2.91 -0.02 2.71 16 9 C 0.00 0.18 1.02 -52.93 -0.05 0.12 16 10 C 0.08 3.38 5.41 86.30 0.47 3.85 16 11 N -0.50 -20.51 5.65 -880.77 -4.98 -25.49 16 12 C 0.00 -0.15 5.82 86.45 0.50 0.36 16 13 C -0.13 -4.80 6.77 31.49 0.21 -4.59 16 14 C 0.17 5.83 3.37 45.89 0.15 5.98 16 15 H 0.08 2.86 7.63 -2.39 -0.02 2.84 16 16 N -0.72 -20.97 5.06 -453.52 -2.29 -23.26 16 17 C 0.70 21.53 8.53 179.05 1.53 23.05 16 18 O -0.63 -24.54 15.63 -3.99 -0.06 -24.61 16 19 N -0.71 -15.78 5.57 -457.82 -2.55 -18.33 16 20 C 0.07 1.44 6.42 44.99 0.29 1.73 16 21 C -0.19 -2.85 10.46 30.60 0.32 -2.53 16 22 C -0.17 -2.17 10.46 30.60 0.32 -1.85 16 23 C 0.02 0.53 4.94 86.40 0.43 0.96 16 24 C -0.21 -8.62 9.91 30.62 0.30 -8.31 16 25 C -0.18 -6.61 7.15 30.62 0.22 -6.39 16 26 H 0.26 13.35 8.32 -92.72 -0.77 12.57 16 27 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 28 H 0.08 4.32 5.67 -2.39 -0.01 4.30 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 4.96 1.69 -2.39 0.00 4.95 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.19 7.95 -2.39 -0.02 2.17 16 33 H 0.41 10.05 8.36 -92.71 -0.77 9.28 16 34 H 0.41 6.85 8.86 -92.71 -0.82 6.03 16 35 H 0.12 2.83 7.43 -2.39 -0.02 2.81 16 36 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 3.13 3.58 -2.39 -0.01 3.12 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 45 H 0.09 2.94 7.33 -2.39 -0.02 2.92 16 Total: -1.00 -58.92 347.74 -3.12 -62.04 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -0.58 Total: 42.39 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.16 Total: -8.51 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -9.58 Total: -112.84 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.61 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.94 Total: 41.53 kcal Total: -58.92 -3.12 -62.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.349 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds