Wall clock time and date at job start Tue Mar 31 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99814 * 2 1 4 4 O 1.20822 * 120.00377 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00102 * 180.02562 * 3 2 1 6 6 N 1.46902 * 112.84630 * 325.00234 * 5 3 2 7 7 C 1.46894 * 111.00055 * 166.72184 * 6 5 3 8 8 C 1.53008 * 109.47114 * 78.44528 * 7 6 5 9 9 C 1.50696 * 115.56096 * 28.41450 * 8 7 6 10 10 H 1.07997 * 120.00336 * 357.52558 * 9 8 7 11 11 C 1.37883 * 120.00003 * 177.51956 * 9 8 7 12 12 N 1.31513 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47608 * 90.00252 * 13 11 9 15 15 H 1.48497 * 109.47235 * 210.00392 * 13 11 9 16 16 H 1.48499 * 109.47158 * 330.00135 * 13 11 9 17 17 C 1.53002 * 117.49884 * 174.10837 * 8 7 6 18 18 C 1.53003 * 60.03287 * 107.47578 * 17 8 7 19 19 C 1.46901 * 111.00187 * 42.76406 * 6 5 3 20 20 C 1.52998 * 117.50074 * 253.05126 * 19 6 5 21 21 C 1.53001 * 117.49713 * 184.39239 * 19 6 5 22 22 C 1.53780 * 113.69253 * 96.26881 * 5 3 2 23 23 C 1.53777 * 87.08390 * 89.12620 * 22 5 3 24 24 C 1.53775 * 113.61426 * 193.80611 * 5 3 2 25 25 H 1.08997 * 109.47295 * 60.00096 * 1 2 3 26 26 H 1.08994 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47183 * 299.99826 * 1 2 3 28 28 H 1.09002 * 109.47599 * 318.45023 * 7 6 5 29 29 H 1.08997 * 109.47552 * 198.44544 * 7 6 5 30 30 H 0.96995 * 120.00133 * 179.97438 * 12 11 9 31 31 H 1.08995 * 117.49633 * 214.97587 * 17 8 7 32 32 H 1.09003 * 117.49581 * 359.97438 * 17 8 7 33 33 H 1.09006 * 117.49943 * 107.49886 * 18 17 8 34 34 H 1.08999 * 117.49917 * 252.52252 * 18 17 8 35 35 H 1.08994 * 115.54846 * 38.72912 * 19 6 5 36 36 H 1.08999 * 117.49605 * 0.02562 * 20 19 6 37 37 H 1.08996 * 117.49638 * 145.02066 * 20 19 6 38 38 H 1.09003 * 117.49875 * 214.98142 * 21 19 6 39 39 H 1.09004 * 117.49826 * 0.02562 * 21 19 6 40 40 H 1.09003 * 113.61378 * 203.68078 * 22 5 3 41 41 H 1.09007 * 113.61353 * 334.57900 * 22 5 3 42 42 H 1.08995 * 113.61538 * 270.88928 * 23 22 5 43 43 H 1.08991 * 113.68883 * 139.98882 * 23 22 5 44 44 H 1.08996 * 113.61965 * 25.34188 * 24 5 3 45 45 H 1.09004 * 113.61683 * 156.25073 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1943 0.1972 0.7754 7 6 5.6347 0.1191 0.4978 8 6 6.3636 1.2195 1.2716 9 6 5.7061 1.6567 2.5551 10 1 4.7611 1.2261 2.8517 11 6 6.3109 2.6063 3.3510 12 7 7.4615 3.1310 2.9897 13 14 5.4962 3.1477 4.9423 14 1 5.9585 2.2800 6.0553 15 1 5.8607 4.5582 5.2302 16 1 4.0217 3.0353 4.8067 17 6 7.8930 1.2216 1.2249 18 6 7.1035 2.2843 0.4578 19 6 3.5374 -1.0907 0.5151 20 6 2.6458 -1.6646 1.6180 21 6 4.0073 -2.3001 1.3259 22 6 4.1748 1.4612 -1.4006 23 6 4.0425 2.9759 -1.1707 24 6 4.1099 2.6736 0.3357 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.8066 0.2513 -0.5704 29 1 6.0124 -0.8549 0.8088 30 1 7.8868 3.7994 3.5493 31 1 8.4234 1.5391 2.1225 32 1 8.3797 0.4387 0.6432 33 1 7.1145 3.3009 0.8508 34 1 7.0705 2.2003 -0.6285 35 1 3.2350 -1.2639 -0.5177 36 1 2.5463 -1.0864 2.5366 37 1 1.7570 -2.2157 1.3108 38 1 4.0137 -3.2690 0.8266 39 1 4.8037 -2.1400 2.0527 40 1 5.2071 1.1196 -1.4769 41 1 3.5427 1.0848 -2.2050 42 1 3.0842 3.3841 -1.4915 43 1 4.8921 3.5506 -1.5391 44 1 3.4256 3.2761 0.9330 45 1 5.1246 2.6636 0.7340 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602845749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:46 Heat of formation + Delta-G solvation = 41.343537 kcal Electronic energy + Delta-G solvation = -26367.443042 eV Core-core repulsion = 22968.768393 eV Total energy + Delta-G solvation = -3398.674649 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99605 -38.89373 -37.01886 -36.19419 -35.49551 -32.21902 -31.30782 -28.28199 -26.32843 -25.94934 -24.71338 -23.79998 -22.04105 -21.68432 -20.83097 -20.11043 -18.98291 -18.59621 -17.29258 -16.33588 -16.12800 -15.78415 -15.33030 -14.97050 -14.63283 -14.24390 -14.13329 -13.38807 -13.14393 -12.93367 -12.74268 -12.39567 -12.10870 -11.93047 -11.62100 -11.39836 -11.09308 -10.99512 -10.91450 -10.70176 -10.66438 -10.44321 -10.39406 -10.12691 -10.06145 -9.88451 -9.80189 -9.62889 -9.53166 -9.29308 -8.57385 -8.27919 -7.92385 -7.48523 -5.87920 -3.89069 2.47856 2.99045 3.34908 3.42668 3.48333 4.25720 4.28744 4.48771 4.86736 4.98449 5.11243 5.17863 5.19085 5.27352 5.42513 5.46269 5.51115 5.52616 5.64140 5.74765 5.80267 5.91901 6.01847 6.07247 6.25938 6.26325 6.39392 6.44852 6.46721 6.50820 6.58602 6.65240 6.65952 6.70255 6.93967 7.01329 7.16110 7.22649 7.51126 7.65199 7.73784 7.94307 8.10164 8.11198 8.25920 8.61851 9.13056 9.65147 11.07774 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.006942 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.417221 B = 4032.418105 C = 4067.447774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C 0.493 3.507 4 O -0.506 6.506 5 C 0.104 3.896 6 N -0.467 5.467 7 C 0.089 3.911 8 C 0.024 3.976 9 C -0.445 4.445 10 H 0.077 0.923 11 C 0.052 3.948 12 N -0.885 5.885 13 Si 0.889 3.111 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.274 1.274 17 C -0.190 4.190 18 C -0.198 4.198 19 C 0.017 3.983 20 C -0.148 4.148 21 C -0.180 4.180 22 C -0.165 4.165 23 C -0.146 4.146 24 C -0.126 4.126 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.256 0.744 31 H 0.117 0.883 32 H 0.038 0.962 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 -7.504 -7.383 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.254 6.254 3 C 0.336 3.664 4 O -0.393 6.393 5 C 0.013 3.987 6 N -0.190 5.190 7 C -0.037 4.037 8 C 0.024 3.976 9 C -0.483 4.483 10 H 0.095 0.905 11 C -0.148 4.148 12 N -0.525 5.525 13 Si 0.718 3.282 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.199 1.199 17 C -0.228 4.228 18 C -0.236 4.236 19 C -0.092 4.092 20 C -0.186 4.186 21 C -0.218 4.218 22 C -0.204 4.204 23 C -0.184 4.184 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.349 -6.968 -6.794 12.823 hybrid contribution -0.589 0.217 -0.044 0.630 sum -8.939 -6.751 -6.838 13.124 Atomic orbital electron populations 1.23196 0.78314 1.02984 1.02060 1.86872 1.21795 1.32897 1.83861 1.23179 0.90857 0.81202 0.71207 1.90605 1.66570 1.36623 1.45469 1.22200 0.85250 0.96785 0.94489 1.61855 1.03200 1.00473 1.53437 1.21976 0.85079 0.99768 0.96835 1.19055 0.89679 0.93394 0.95523 1.20681 1.05786 1.19731 1.02100 0.90458 1.25033 0.95047 0.96819 0.97926 1.69998 1.16232 1.28680 1.37563 0.86616 0.79996 0.77579 0.84027 1.20992 1.21579 1.19855 1.22998 0.97393 0.99563 1.02844 1.22953 1.08962 0.98729 0.92954 1.22329 1.02375 0.89615 0.94874 1.22843 0.92867 1.02522 1.00359 1.23103 0.99255 0.95582 1.03852 1.23680 1.02864 0.98475 0.95341 1.22835 1.01481 0.94856 0.99222 1.24073 1.07997 0.89511 0.94631 0.92598 0.88666 0.92163 0.94726 0.91434 0.93339 0.86466 0.94329 0.87554 0.94007 0.89903 0.88790 0.89808 0.89597 0.88020 0.87004 0.92476 0.90954 0.91127 0.91768 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.34 -5.12 5.70 -39.25 -0.22 -5.34 16 3 C 0.49 8.93 7.03 36.01 0.25 9.18 16 4 O -0.51 -10.11 15.10 -18.75 -0.28 -10.39 16 5 C 0.10 1.92 1.18 -131.94 -0.16 1.76 16 6 N -0.47 -8.66 3.33 -211.49 -0.71 -9.37 16 7 C 0.09 1.72 4.82 -3.82 -0.02 1.70 16 8 C 0.02 0.55 1.35 -155.62 -0.21 0.34 16 9 C -0.45 -11.24 6.65 -34.44 -0.23 -11.47 16 10 H 0.08 2.03 6.98 -52.49 -0.37 1.66 16 11 C 0.05 1.35 5.28 -17.82 -0.09 1.25 16 12 N -0.89 -23.56 8.59 55.43 0.48 -23.08 16 13 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.19 -4.42 9.37 -26.73 -0.25 -4.67 16 18 C -0.20 -4.48 7.35 -26.69 -0.20 -4.67 16 19 C 0.02 0.26 3.26 -67.71 -0.22 0.04 16 20 C -0.15 -2.14 8.75 -26.70 -0.23 -2.38 16 21 C -0.18 -2.57 9.51 -26.69 -0.25 -2.82 16 22 C -0.16 -2.70 6.92 -25.92 -0.18 -2.88 16 23 C -0.15 -2.53 7.69 -25.92 -0.20 -2.73 16 24 C -0.13 -2.56 5.96 -25.92 -0.15 -2.72 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.04 0.63 4.55 -51.93 -0.24 0.39 16 29 H 0.07 1.27 6.68 -51.93 -0.35 0.92 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.12 3.06 6.07 -51.93 -0.32 2.75 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 2.70 6.45 -51.93 -0.33 2.36 16 34 H 0.04 0.86 7.71 -51.93 -0.40 0.46 16 35 H 0.08 1.26 7.45 -51.93 -0.39 0.87 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.61 7.68 -51.93 -0.40 1.21 16 40 H 0.11 1.84 4.79 -51.93 -0.25 1.59 16 41 H 0.06 0.85 8.10 -51.92 -0.42 0.43 16 42 H 0.07 1.24 7.60 -51.93 -0.39 0.84 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.41 7.65 -51.93 -0.40 1.01 16 45 H 0.17 3.87 1.89 -51.93 -0.10 3.77 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -27.15 336.28 -8.62 -35.78 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.86 Total: 9.91 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.08 Total: -18.66 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: -0.23 Total: -32.45 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.51 Total: -15.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.15 -8.62 -35.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.123 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds