Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99814 * 2 1 4 4 O 1.20822 * 120.00377 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00102 * 180.02562 * 3 2 1 6 6 N 1.46902 * 112.84630 * 325.00234 * 5 3 2 7 7 C 1.46894 * 111.00055 * 166.72184 * 6 5 3 8 8 C 1.53008 * 109.47114 * 78.44528 * 7 6 5 9 9 C 1.50696 * 115.56096 * 28.41450 * 8 7 6 10 10 H 1.07997 * 120.00336 * 357.52558 * 9 8 7 11 11 C 1.37883 * 120.00003 * 177.51956 * 9 8 7 12 12 N 1.31513 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47608 * 90.00252 * 13 11 9 15 15 H 1.48497 * 109.47235 * 210.00392 * 13 11 9 16 16 H 1.48499 * 109.47158 * 330.00135 * 13 11 9 17 17 C 1.53002 * 117.49884 * 174.10837 * 8 7 6 18 18 C 1.53003 * 60.03287 * 107.47578 * 17 8 7 19 19 C 1.46901 * 111.00187 * 42.76406 * 6 5 3 20 20 C 1.52998 * 117.50074 * 253.05126 * 19 6 5 21 21 C 1.53001 * 117.49713 * 184.39239 * 19 6 5 22 22 C 1.53780 * 113.69253 * 96.26881 * 5 3 2 23 23 C 1.53777 * 87.08390 * 89.12620 * 22 5 3 24 24 C 1.53775 * 113.61426 * 193.80611 * 5 3 2 25 25 H 1.08997 * 109.47295 * 60.00096 * 1 2 3 26 26 H 1.08994 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47183 * 299.99826 * 1 2 3 28 28 H 1.09002 * 109.47599 * 318.45023 * 7 6 5 29 29 H 1.08997 * 109.47552 * 198.44544 * 7 6 5 30 30 H 0.96995 * 120.00133 * 179.97438 * 12 11 9 31 31 H 1.08995 * 117.49633 * 214.97587 * 17 8 7 32 32 H 1.09003 * 117.49581 * 359.97438 * 17 8 7 33 33 H 1.09006 * 117.49943 * 107.49886 * 18 17 8 34 34 H 1.08999 * 117.49917 * 252.52252 * 18 17 8 35 35 H 1.08994 * 115.54846 * 38.72912 * 19 6 5 36 36 H 1.08999 * 117.49605 * 0.02562 * 20 19 6 37 37 H 1.08996 * 117.49638 * 145.02066 * 20 19 6 38 38 H 1.09003 * 117.49875 * 214.98142 * 21 19 6 39 39 H 1.09004 * 117.49826 * 0.02562 * 21 19 6 40 40 H 1.09003 * 113.61378 * 203.68078 * 22 5 3 41 41 H 1.09007 * 113.61353 * 334.57900 * 22 5 3 42 42 H 1.08995 * 113.61538 * 270.88928 * 23 22 5 43 43 H 1.08991 * 113.68883 * 139.98882 * 23 22 5 44 44 H 1.08996 * 113.61965 * 25.34188 * 24 5 3 45 45 H 1.09004 * 113.61683 * 156.25073 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1943 0.1972 0.7754 7 6 5.6347 0.1191 0.4978 8 6 6.3636 1.2195 1.2716 9 6 5.7061 1.6567 2.5551 10 1 4.7611 1.2261 2.8517 11 6 6.3109 2.6063 3.3510 12 7 7.4615 3.1310 2.9897 13 14 5.4962 3.1477 4.9423 14 1 5.9585 2.2800 6.0553 15 1 5.8607 4.5582 5.2302 16 1 4.0217 3.0353 4.8067 17 6 7.8930 1.2216 1.2249 18 6 7.1035 2.2843 0.4578 19 6 3.5374 -1.0907 0.5151 20 6 2.6458 -1.6646 1.6180 21 6 4.0073 -2.3001 1.3259 22 6 4.1748 1.4612 -1.4006 23 6 4.0425 2.9759 -1.1707 24 6 4.1099 2.6736 0.3357 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.8066 0.2513 -0.5704 29 1 6.0124 -0.8549 0.8088 30 1 7.8868 3.7994 3.5493 31 1 8.4234 1.5391 2.1225 32 1 8.3797 0.4387 0.6432 33 1 7.1145 3.3009 0.8508 34 1 7.0705 2.2003 -0.6285 35 1 3.2350 -1.2639 -0.5177 36 1 2.5463 -1.0864 2.5366 37 1 1.7570 -2.2157 1.3108 38 1 4.0137 -3.2690 0.8266 39 1 4.8037 -2.1400 2.0527 40 1 5.2071 1.1196 -1.4769 41 1 3.5427 1.0848 -2.2050 42 1 3.0842 3.3841 -1.4915 43 1 4.8921 3.5506 -1.5391 44 1 3.4256 3.2761 0.9330 45 1 5.1246 2.6636 0.7340 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602845749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = 28.363296 kcal Electronic energy + Delta-G solvation = -26368.005908 eV Core-core repulsion = 22968.768393 eV Total energy + Delta-G solvation = -3399.237514 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38073 -40.29561 -38.27805 -37.85065 -36.85498 -33.81952 -33.06226 -29.48648 -27.92923 -27.45552 -26.27046 -25.24543 -23.33863 -22.97904 -22.51214 -21.38814 -20.75173 -20.03338 -18.65462 -17.72953 -17.50740 -17.40311 -16.81436 -16.66369 -16.05511 -15.52300 -15.51831 -15.13127 -14.57040 -14.34431 -14.05303 -13.74643 -13.57457 -13.30407 -13.04709 -12.89763 -12.79780 -12.73578 -12.48216 -12.16209 -12.07673 -11.97733 -11.89111 -11.81950 -11.66024 -11.50388 -11.27240 -11.05964 -10.91807 -10.72535 -10.45372 -10.10475 -9.75267 -8.86687 -7.88237 -5.91625 1.09600 1.39928 1.44533 1.52353 1.77427 2.50057 2.92253 3.10794 3.17151 3.52693 3.61660 3.85373 4.01711 4.10458 4.22892 4.30659 4.32058 4.36390 4.38558 4.41215 4.56526 4.61567 4.74152 4.78183 4.86720 4.90505 4.96290 5.01459 5.03508 5.10457 5.14299 5.25796 5.28034 5.34211 5.35210 5.43696 5.47586 5.51548 5.76261 5.95782 6.07838 6.25435 6.33979 6.52168 6.70943 6.77685 7.11390 7.63018 9.04723 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.006942 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.417221 B = 4032.418105 C = 4067.447774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.332 6.332 3 C 0.494 3.506 4 O -0.534 6.534 5 C 0.102 3.898 6 N -0.487 5.487 7 C 0.098 3.902 8 C 0.023 3.977 9 C -0.442 4.442 10 H 0.063 0.937 11 C 0.012 3.988 12 N -0.901 5.901 13 Si 0.931 3.069 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.281 1.281 17 C -0.196 4.196 18 C -0.185 4.185 19 C 0.007 3.993 20 C -0.144 4.144 21 C -0.169 4.169 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.142 4.142 25 H 0.060 0.940 26 H 0.135 0.865 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.251 0.749 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -9.776 -9.199 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C 0.338 3.662 4 O -0.423 6.423 5 C 0.011 3.989 6 N -0.210 5.210 7 C -0.028 4.028 8 C 0.022 3.978 9 C -0.480 4.480 10 H 0.081 0.919 11 C -0.186 4.186 12 N -0.542 5.542 13 Si 0.760 3.240 14 H -0.208 1.208 15 H -0.218 1.218 16 H -0.206 1.206 17 C -0.235 4.235 18 C -0.223 4.223 19 C -0.102 4.102 20 C -0.182 4.182 21 C -0.206 4.206 22 C -0.187 4.187 23 C -0.174 4.174 24 C -0.179 4.179 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.452 -9.265 -8.603 15.786 hybrid contribution -0.331 0.908 0.575 1.125 sum -9.783 -8.357 -8.027 15.165 Atomic orbital electron populations 1.23544 0.76096 1.05575 1.01944 1.86839 1.23836 1.31005 1.83066 1.23100 0.90767 0.81656 0.70718 1.90594 1.67076 1.37690 1.46921 1.22111 0.85856 0.95432 0.95539 1.61679 1.02980 1.02033 1.54318 1.21827 0.85388 0.98381 0.97230 1.19113 0.89357 0.94398 0.94943 1.20782 1.05027 1.19008 1.03179 0.91907 1.25505 0.95652 0.97526 0.99905 1.70125 1.16919 1.29130 1.38018 0.85962 0.78769 0.77067 0.82185 1.20767 1.21810 1.20645 1.22905 0.97728 1.00593 1.02252 1.22746 1.08564 0.96881 0.94081 1.22414 1.03187 0.88654 0.95899 1.22853 0.94210 1.02284 0.98872 1.23126 0.98257 0.96309 1.02909 1.23570 1.03228 0.97218 0.94705 1.22754 1.01869 0.96129 0.96637 1.23977 1.06187 0.91467 0.96311 0.92074 0.84684 0.93038 0.92881 0.90886 0.93878 0.89603 0.91892 0.90729 0.91466 0.88402 0.91390 0.87009 0.86556 0.90052 0.86654 0.90161 0.90858 0.90328 0.94914 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.56 113.37 1.20 1.63 16 2 O -0.33 -9.16 5.70 -51.40 -0.29 -9.46 16 3 C 0.49 17.22 7.03 71.24 0.50 17.72 16 4 O -0.53 -21.12 15.10 21.98 0.33 -20.79 16 5 C 0.10 3.63 1.18 3.31 0.00 3.63 16 6 N -0.49 -17.37 3.33 -823.03 -2.74 -20.11 16 7 C 0.10 3.58 4.82 86.31 0.42 4.00 16 8 C 0.02 1.02 1.35 -52.90 -0.07 0.95 16 9 C -0.44 -22.73 6.65 25.60 0.17 -22.56 16 10 H 0.06 3.37 6.98 -2.91 -0.02 3.35 16 11 C 0.01 0.63 5.28 84.66 0.45 1.07 16 12 N -0.90 -49.42 8.59 21.45 0.18 -49.24 16 13 Si 0.93 44.60 29.54 68.60 2.03 46.63 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 16 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 17 C -0.20 -9.07 9.37 30.60 0.29 -8.79 16 18 C -0.18 -8.29 7.35 30.62 0.23 -8.07 16 19 C 0.01 0.19 3.26 44.91 0.15 0.33 16 20 C -0.14 -3.81 8.75 30.62 0.27 -3.54 16 21 C -0.17 -4.29 9.51 30.62 0.29 -4.00 16 22 C -0.15 -4.48 6.92 31.12 0.22 -4.26 16 23 C -0.14 -4.55 7.69 31.12 0.24 -4.31 16 24 C -0.14 -5.87 5.96 31.12 0.19 -5.69 16 25 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 26 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.05 1.75 4.55 -2.39 -0.01 1.74 16 29 H 0.07 2.58 6.68 -2.39 -0.02 2.56 16 30 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.09 4.56 6.07 -2.39 -0.01 4.55 16 32 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 3.86 6.45 -2.38 -0.02 3.85 16 34 H 0.07 2.64 7.71 -2.39 -0.02 2.62 16 35 H 0.10 2.55 7.45 -2.39 -0.02 2.53 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.11 2.30 8.12 -2.39 -0.02 2.28 16 38 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.43 7.68 -2.39 -0.02 2.41 16 40 H 0.12 3.40 4.79 -2.39 -0.01 3.39 16 41 H 0.08 2.07 8.10 -2.38 -0.02 2.05 16 42 H 0.07 2.44 7.60 -2.39 -0.02 2.42 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.03 1.49 7.65 -2.39 -0.02 1.47 16 45 H 0.15 6.98 1.89 -2.38 0.00 6.98 16 Total: -1.00 -60.29 336.28 5.02 -55.28 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.99 Total: 29.56 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 4.52 Total: -31.87 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -2.56 Total: -69.35 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.04 Total: -30.24 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.29 5.02 -55.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.640 kcal (2) G-P(sol) polarization free energy of solvation -60.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds