Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48497 * 109.46957 * 240.00251 * 3 2 1 5 5 H 1.48494 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47157 * 120.00230 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36937 * 119.99269 * 17.25596 * 7 2 1 10 10 C 1.46928 * 120.62751 * 207.39032 * 9 7 2 11 11 C 1.53184 * 108.89946 * 233.68087 * 10 9 7 12 12 C 1.53045 * 109.31045 * 305.29664 * 11 10 9 13 13 N 1.46500 * 109.45772 * 181.38140 * 12 11 10 14 14 C 1.34777 * 119.99730 * 154.99987 * 13 12 11 15 15 O 1.21596 * 119.99914 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00345 * 180.02562 * 14 13 12 17 17 C 1.50242 * 130.83399 * 359.65644 * 16 14 13 18 18 C 1.56857 * 100.58754 * 234.63429 * 17 16 14 19 19 C 1.54853 * 103.35458 * 326.65987 * 18 17 16 20 20 C 1.50238 * 130.84123 * 180.02562 * 16 14 13 21 21 C 1.55851 * 101.04751 * 233.92812 * 20 16 14 22 22 C 1.55482 * 103.32513 * 326.97486 * 21 20 16 23 23 C 1.53036 * 109.53839 * 61.36417 * 12 11 10 24 24 C 1.47200 * 120.81872 * 27.54201 * 9 7 2 25 25 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.58457 * 113.81908 * 10 9 7 27 27 H 1.09001 * 109.58548 * 353.54535 * 10 9 7 28 28 H 1.09004 * 109.49587 * 65.24382 * 11 10 9 29 29 H 1.09000 * 109.49989 * 185.34836 * 11 10 9 30 30 H 1.08993 * 109.45838 * 301.34309 * 12 11 10 31 31 H 0.96999 * 120.00683 * 335.00295 * 13 12 11 32 32 H 1.08995 * 115.85756 * 359.68381 * 17 16 14 33 33 H 1.08996 * 110.43624 * 208.30935 * 18 17 16 34 34 H 1.09004 * 111.03748 * 85.29021 * 18 17 16 35 35 H 1.09002 * 110.62604 * 241.78189 * 19 18 17 36 36 H 1.09004 * 110.76332 * 118.82948 * 19 18 17 37 37 H 1.09000 * 115.85777 * 359.60452 * 20 16 14 38 38 H 1.08990 * 110.62579 * 85.55208 * 21 20 16 39 39 H 1.09001 * 110.62180 * 208.57209 * 21 20 16 40 40 H 1.09000 * 110.60789 * 241.58360 * 22 21 20 41 41 H 1.08999 * 110.88918 * 118.55156 * 22 21 20 42 42 H 1.09007 * 109.49849 * 58.58654 * 23 12 11 43 43 H 1.09003 * 109.49941 * 178.65147 * 23 12 11 44 44 H 1.09001 * 109.53557 * 6.52997 * 24 9 7 45 45 H 1.09002 * 109.67524 * 246.22900 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0756 -4.6095 -0.9953 12 6 0.8160 -4.6926 -1.8606 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1330 -6.0364 -3.1524 16 7 0.2060 -7.1153 -4.5584 17 6 1.4764 -7.5524 -5.2310 18 6 1.1380 -7.2242 -6.7271 19 6 -0.3853 -7.4883 -6.8155 20 6 -0.7611 -7.9302 -5.3694 21 6 -0.1656 -9.3600 -5.1960 22 6 1.3647 -9.1018 -5.1012 23 6 0.4915 -3.3083 -2.4264 24 6 0.2213 -2.3393 -1.2711 25 1 -0.4850 0.8401 0.0004 26 1 1.0553 -4.0719 0.8279 27 1 2.7458 -3.5175 0.7404 28 1 2.9055 -4.2369 -1.5959 29 1 2.3194 -5.6002 -0.6117 30 1 -0.0192 -5.0417 -1.2534 31 1 1.9445 -5.8022 -3.2762 32 1 2.3941 -7.1036 -4.8512 33 1 1.6827 -7.8909 -7.3955 34 1 1.3612 -6.1829 -6.9594 35 1 -0.5960 -8.2860 -7.5278 36 1 -0.9199 -6.5789 -7.0900 37 1 -1.8127 -7.8233 -5.1035 38 1 -0.5368 -9.8222 -4.2814 39 1 -0.3972 -9.9799 -6.0621 40 1 1.8884 -9.5943 -5.9204 41 1 1.7564 -9.4360 -4.1405 42 1 1.3363 -2.9479 -3.0135 43 1 -0.3919 -3.3728 -3.0618 44 1 0.0872 -1.3312 -1.6633 45 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609341087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = 10.787491 kcal Electronic energy + Delta-G solvation = -24446.270006 eV Core-core repulsion = 21078.563099 eV Total energy + Delta-G solvation = -3367.706907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81759 -38.84878 -37.06843 -34.27878 -32.32219 -31.16836 -30.74666 -29.90963 -29.68580 -29.03764 -25.02625 -23.23368 -22.47328 -22.15923 -21.59373 -19.81505 -19.65705 -19.16443 -18.04202 -16.70249 -15.95539 -15.74103 -15.59919 -14.88959 -14.45540 -14.16437 -13.71469 -13.45171 -13.29978 -13.11085 -12.91250 -12.87666 -12.48146 -12.40489 -12.13353 -12.03689 -11.67532 -11.44583 -11.23278 -11.11715 -11.01206 -10.88001 -10.68863 -10.33640 -10.32202 -10.21777 -10.03049 -9.87320 -9.70382 -9.50532 -8.88579 -8.51824 -8.31332 -6.65396 -5.74724 -3.17056 2.61636 3.40676 3.42489 3.46636 3.47544 3.95474 4.28490 4.38250 4.49016 4.52455 4.75462 4.90726 4.95635 5.04455 5.09331 5.24595 5.31789 5.36070 5.45091 5.50987 5.60464 5.63327 5.69373 5.70420 5.84341 5.89733 5.92272 5.96952 6.10199 6.14819 6.28905 6.44445 6.52282 6.67354 6.69907 6.84167 6.97361 7.05140 7.29768 7.44756 7.73229 7.82502 8.22450 8.48220 8.87617 9.24156 9.87917 10.45245 11.33902 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.003311 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.221155 B = 8455.117642 C = 8556.147561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.729 3.271 15 O -0.590 6.590 16 N -0.653 5.653 17 C 0.120 3.880 18 C -0.130 4.130 19 C -0.133 4.133 20 C 0.147 3.853 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.146 4.146 24 C 0.173 3.827 25 H 0.255 0.745 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.387 0.613 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -19.151 -13.939 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.432 3.568 15 O -0.468 6.468 16 N -0.392 5.392 17 C 0.016 3.984 18 C -0.169 4.169 19 C -0.171 4.171 20 C 0.043 3.957 21 C -0.170 4.170 22 C -0.167 4.167 23 C -0.186 4.186 24 C 0.047 3.953 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.220 0.780 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.820 -18.684 -13.447 23.192 hybrid contribution 0.922 0.799 -0.233 1.243 sum 3.742 -17.885 -13.680 22.826 Atomic orbital electron populations 1.70030 1.05259 1.25621 1.53601 1.25045 0.95265 0.98401 1.00912 0.86371 0.78900 0.83430 0.78059 1.21093 1.21641 1.20903 1.19135 0.92636 0.84890 1.41776 0.91676 1.44156 1.35521 1.01282 1.50598 1.20827 0.97929 0.86768 0.92306 1.22339 0.96732 0.99629 0.99084 1.20900 0.98449 0.88256 0.85854 1.45495 1.07712 1.47409 1.38521 1.15402 0.85037 0.77915 0.78480 1.90928 1.21813 1.68059 1.65958 1.49672 1.08807 1.45660 1.35106 1.23766 0.88504 0.94150 0.91979 1.23087 0.96205 1.02046 0.95534 1.22929 0.96120 1.01841 0.96217 1.23412 0.94619 0.88824 0.88848 1.23038 0.95374 0.96319 1.02270 1.22991 0.96492 0.94917 1.02280 1.22564 1.00373 0.95254 1.00423 1.20805 0.88546 0.98218 0.87736 0.93545 0.96194 0.92399 0.91992 0.92725 0.90162 0.77976 0.87230 0.90652 0.91151 0.90552 0.91158 0.86682 0.91197 0.90506 0.90557 0.91231 0.92899 0.92863 0.89291 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 11.18 55.49 0.62 -26.12 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.22 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -15.15 3.01 -172.10 -0.52 -15.67 16 10 C 0.15 3.15 6.50 -3.71 -0.02 3.12 16 11 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 12 C 0.17 3.14 2.41 -67.89 -0.16 2.98 16 13 N -0.74 -11.51 5.07 -58.64 -0.30 -11.81 16 14 C 0.73 12.33 8.64 -86.92 -0.75 11.58 16 15 O -0.59 -12.64 16.61 5.28 0.09 -12.55 16 16 N -0.65 -8.20 2.89 -151.21 -0.44 -8.64 16 17 C 0.12 1.03 5.14 -62.21 -0.32 0.71 16 18 C -0.13 -0.98 6.50 -23.67 -0.15 -1.14 16 19 C -0.13 -1.08 6.46 -24.25 -0.16 -1.24 16 20 C 0.15 1.50 5.24 -62.82 -0.33 1.18 16 21 C -0.13 -1.02 6.49 -23.89 -0.16 -1.17 16 22 C -0.13 -0.91 6.50 -23.87 -0.16 -1.07 16 23 C -0.15 -3.07 5.65 -26.61 -0.15 -3.22 16 24 C 0.17 4.36 5.33 -3.56 -0.02 4.34 16 25 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 31 H 0.39 4.92 7.38 -40.82 -0.30 4.61 16 32 H 0.11 0.82 7.23 -51.93 -0.38 0.45 16 33 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.44 7.85 -51.93 -0.41 0.04 16 40 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -33.28 347.97 -10.71 -44.00 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.63 Total: 2.37 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -2.76 Total: 6.30 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.63 Total: -62.23 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.28 -10.71 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.783 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds