Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48497 * 109.46957 * 240.00251 * 3 2 1 5 5 H 1.48494 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47157 * 120.00230 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36937 * 119.99269 * 17.25596 * 7 2 1 10 10 C 1.46928 * 120.62751 * 207.39032 * 9 7 2 11 11 C 1.53184 * 108.89946 * 233.68087 * 10 9 7 12 12 C 1.53045 * 109.31045 * 305.29664 * 11 10 9 13 13 N 1.46500 * 109.45772 * 181.38140 * 12 11 10 14 14 C 1.34777 * 119.99730 * 154.99987 * 13 12 11 15 15 O 1.21596 * 119.99914 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00345 * 180.02562 * 14 13 12 17 17 C 1.50242 * 130.83399 * 359.65644 * 16 14 13 18 18 C 1.56857 * 100.58754 * 234.63429 * 17 16 14 19 19 C 1.54853 * 103.35458 * 326.65987 * 18 17 16 20 20 C 1.50238 * 130.84123 * 180.02562 * 16 14 13 21 21 C 1.55851 * 101.04751 * 233.92812 * 20 16 14 22 22 C 1.55482 * 103.32513 * 326.97486 * 21 20 16 23 23 C 1.53036 * 109.53839 * 61.36417 * 12 11 10 24 24 C 1.47200 * 120.81872 * 27.54201 * 9 7 2 25 25 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.58457 * 113.81908 * 10 9 7 27 27 H 1.09001 * 109.58548 * 353.54535 * 10 9 7 28 28 H 1.09004 * 109.49587 * 65.24382 * 11 10 9 29 29 H 1.09000 * 109.49989 * 185.34836 * 11 10 9 30 30 H 1.08993 * 109.45838 * 301.34309 * 12 11 10 31 31 H 0.96999 * 120.00683 * 335.00295 * 13 12 11 32 32 H 1.08995 * 115.85756 * 359.68381 * 17 16 14 33 33 H 1.08996 * 110.43624 * 208.30935 * 18 17 16 34 34 H 1.09004 * 111.03748 * 85.29021 * 18 17 16 35 35 H 1.09002 * 110.62604 * 241.78189 * 19 18 17 36 36 H 1.09004 * 110.76332 * 118.82948 * 19 18 17 37 37 H 1.09000 * 115.85777 * 359.60452 * 20 16 14 38 38 H 1.08990 * 110.62579 * 85.55208 * 21 20 16 39 39 H 1.09001 * 110.62180 * 208.57209 * 21 20 16 40 40 H 1.09000 * 110.60789 * 241.58360 * 22 21 20 41 41 H 1.08999 * 110.88918 * 118.55156 * 22 21 20 42 42 H 1.09007 * 109.49849 * 58.58654 * 23 12 11 43 43 H 1.09003 * 109.49941 * 178.65147 * 23 12 11 44 44 H 1.09001 * 109.53557 * 6.52997 * 24 9 7 45 45 H 1.09002 * 109.67524 * 246.22900 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0756 -4.6095 -0.9953 12 6 0.8160 -4.6926 -1.8606 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1330 -6.0364 -3.1524 16 7 0.2060 -7.1153 -4.5584 17 6 1.4764 -7.5524 -5.2310 18 6 1.1380 -7.2242 -6.7271 19 6 -0.3853 -7.4883 -6.8155 20 6 -0.7611 -7.9302 -5.3694 21 6 -0.1656 -9.3600 -5.1960 22 6 1.3647 -9.1018 -5.1012 23 6 0.4915 -3.3083 -2.4264 24 6 0.2213 -2.3393 -1.2711 25 1 -0.4850 0.8401 0.0004 26 1 1.0553 -4.0719 0.8279 27 1 2.7458 -3.5175 0.7404 28 1 2.9055 -4.2369 -1.5959 29 1 2.3194 -5.6002 -0.6117 30 1 -0.0192 -5.0417 -1.2534 31 1 1.9445 -5.8022 -3.2762 32 1 2.3941 -7.1036 -4.8512 33 1 1.6827 -7.8909 -7.3955 34 1 1.3612 -6.1829 -6.9594 35 1 -0.5960 -8.2860 -7.5278 36 1 -0.9199 -6.5789 -7.0900 37 1 -1.8127 -7.8233 -5.1035 38 1 -0.5368 -9.8222 -4.2814 39 1 -0.3972 -9.9799 -6.0621 40 1 1.8884 -9.5943 -5.9204 41 1 1.7564 -9.4360 -4.1405 42 1 1.3363 -2.9479 -3.0135 43 1 -0.3919 -3.3728 -3.0618 44 1 0.0872 -1.3312 -1.6633 45 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = -10.302365 kcal Electronic energy + Delta-G solvation = -24447.184531 eV Core-core repulsion = 21078.563099 eV Total energy + Delta-G solvation = -3368.621432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74959 -40.14734 -38.70319 -35.97281 -34.03107 -32.54827 -31.64554 -31.33578 -30.82232 -30.24339 -26.91774 -24.50425 -23.91479 -23.12672 -23.05412 -21.22976 -20.56707 -20.45268 -19.21890 -18.60693 -17.18467 -16.81373 -16.61155 -16.56293 -15.94861 -15.47070 -15.36267 -15.13267 -14.79644 -14.31749 -14.23456 -13.90346 -13.86877 -13.48580 -13.20746 -13.05072 -13.01039 -12.67438 -12.61519 -12.56457 -12.21697 -12.14650 -12.09512 -11.89109 -11.85953 -11.66236 -11.55949 -11.40815 -11.17431 -10.96490 -10.58523 -10.19973 -9.56241 -8.73713 -7.87727 -5.33835 1.47269 1.50090 1.53670 1.57358 2.15768 2.51602 2.91787 3.28263 3.57429 3.64128 3.69376 3.78066 3.86095 4.07251 4.13690 4.24642 4.27891 4.31392 4.43656 4.44763 4.54773 4.58583 4.61512 4.64498 4.77565 4.85998 5.02210 5.05328 5.05944 5.07259 5.09478 5.10756 5.22863 5.26506 5.28987 5.39603 5.42363 5.45534 5.59435 5.62772 5.67305 6.18697 6.37112 7.05687 7.11671 7.61376 7.82585 8.36638 9.19622 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.003311 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.221155 B = 8455.117642 C = 8556.147561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.119 4.119 12 C 0.181 3.819 13 N -0.724 5.724 14 C 0.720 3.280 15 O -0.647 6.647 16 N -0.655 5.655 17 C 0.113 3.887 18 C -0.125 4.125 19 C -0.127 4.127 20 C 0.128 3.872 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.128 4.128 24 C 0.184 3.816 25 H 0.249 0.751 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.406 0.594 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.056 0.944 45 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -21.328 -15.791 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.158 4.158 12 C 0.076 3.924 13 N -0.379 5.379 14 C 0.423 3.577 15 O -0.529 6.529 16 N -0.393 5.393 17 C 0.011 3.989 18 C -0.163 4.163 19 C -0.165 4.165 20 C 0.025 3.975 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.168 4.168 24 C 0.057 3.943 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.242 0.758 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 6.079 -20.936 -15.348 26.662 hybrid contribution -0.118 1.392 0.327 1.434 sum 5.962 -19.544 -15.022 25.361 Atomic orbital electron populations 1.70215 1.06989 1.25952 1.55371 1.25896 0.95995 1.01885 1.01230 0.85277 0.77457 0.78826 0.78510 1.20205 1.22384 1.19728 1.19567 0.93217 0.85829 1.40783 0.90644 1.44396 1.35248 1.02546 1.51093 1.21037 0.97932 0.85539 0.93901 1.22126 0.95968 1.00425 0.97310 1.20505 0.98384 0.87049 0.86467 1.45074 1.08510 1.46574 1.37730 1.15627 0.84266 0.78530 0.79292 1.90885 1.24048 1.70046 1.67964 1.49814 1.11659 1.44187 1.33684 1.24179 0.87168 0.95396 0.92140 1.23105 0.95667 1.02299 0.95209 1.22920 0.96568 1.01957 0.95055 1.23678 0.93486 0.90483 0.89860 1.23021 0.95794 0.94477 1.02922 1.23003 0.95853 0.93522 1.03473 1.22299 0.99951 0.96105 0.98491 1.20493 0.87785 0.97321 0.88709 0.94180 0.97131 0.91116 0.90570 0.89150 0.93059 0.75775 0.85837 0.87344 0.92221 0.87542 0.93139 0.89218 0.92602 0.87616 0.87353 0.91567 0.92148 0.94273 0.92588 0.99404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 11.18 21.65 0.24 -57.69 16 2 C -0.06 -3.15 4.92 84.86 0.42 -2.73 16 3 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.26 -14.70 9.59 84.04 0.81 -13.90 16 8 H 0.08 3.97 7.89 -2.91 -0.02 3.95 16 9 N -0.61 -31.62 3.01 -698.39 -2.10 -33.72 16 10 C 0.14 5.89 6.50 86.36 0.56 6.45 16 11 C -0.12 -3.85 5.55 30.67 0.17 -3.68 16 12 C 0.18 6.72 2.41 45.02 0.11 6.83 16 13 N -0.72 -21.85 5.07 -457.68 -2.32 -24.17 16 14 C 0.72 24.57 8.64 179.05 1.55 26.12 16 15 O -0.65 -29.15 16.61 -4.02 -0.07 -29.22 16 16 N -0.66 -15.85 2.89 -750.57 -2.17 -18.02 16 17 C 0.11 1.58 5.14 46.61 0.24 1.82 16 18 C -0.12 -1.44 6.50 32.58 0.21 -1.23 16 19 C -0.13 -1.78 6.46 32.20 0.21 -1.58 16 20 C 0.13 2.52 5.24 46.22 0.24 2.76 16 21 C -0.12 -1.59 6.49 32.43 0.21 -1.38 16 22 C -0.12 -1.22 6.50 32.44 0.21 -1.01 16 23 C -0.13 -5.54 5.65 30.67 0.17 -5.37 16 24 C 0.18 9.70 5.33 86.31 0.46 10.16 16 25 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 26 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 31 H 0.41 9.20 7.38 -92.71 -0.68 8.52 16 32 H 0.12 1.37 7.23 -2.39 -0.02 1.35 16 33 H 0.11 0.61 7.88 -2.39 -0.02 0.59 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.88 7.85 -2.39 -0.02 0.86 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.77 7.85 -2.39 -0.02 0.75 16 40 H 0.11 0.49 7.88 -2.39 -0.02 0.47 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 3.31 6.04 -2.39 -0.01 3.29 16 45 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 Total: -1.00 -77.14 347.97 1.47 -75.67 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.28 Total: 16.35 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 5.57 Total: 23.27 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -6.35 Total: -133.59 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.07 Total: -29.22 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -77.14 1.47 -75.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.367 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds