Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.46966 * 2 1 4 4 C 1.46896 * 110.99896 * 297.32155 * 3 2 1 5 5 C 1.50701 * 109.46985 * 292.71430 * 4 3 2 6 6 H 1.08003 * 120.00005 * 355.02047 * 5 4 3 7 7 C 1.37880 * 120.00215 * 175.02860 * 5 4 3 8 8 N 1.31512 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46746 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47248 * 119.99631 * 9 7 5 12 12 H 1.48499 * 109.46988 * 239.99923 * 9 7 5 13 13 C 1.46898 * 110.99617 * 61.27367 * 3 2 1 14 14 C 1.53001 * 109.47402 * 66.04859 * 13 3 2 15 15 O 1.42897 * 109.47192 * 64.99717 * 14 13 3 16 16 C 1.42896 * 113.99967 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47107 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94416 * 269.72373 * 17 16 15 19 19 C 1.38147 * 120.04845 * 179.72560 * 18 17 16 20 20 C 1.38726 * 119.94753 * 0.57412 * 19 18 17 21 21 O 1.35901 * 120.05584 * 179.68502 * 20 19 18 22 22 C 1.42906 * 116.99949 * 0.02562 * 21 20 19 23 23 C 1.38731 * 119.88879 * 359.69892 * 20 19 18 24 24 C 1.38139 * 119.94533 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.47262 * 59.43095 * 1 2 3 26 26 H 1.08998 * 109.46603 * 179.42971 * 1 2 3 27 27 H 1.08993 * 109.47090 * 299.42735 * 1 2 3 28 28 H 1.08996 * 109.47424 * 240.00051 * 2 1 3 29 29 H 1.08999 * 109.47390 * 119.99589 * 2 1 3 30 30 H 1.08998 * 109.47430 * 52.71461 * 4 3 2 31 31 H 1.09000 * 109.47277 * 172.71802 * 4 3 2 32 32 H 0.97004 * 120.00277 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47138 * 306.04600 * 13 3 2 34 34 H 1.09001 * 109.47103 * 186.04635 * 13 3 2 35 35 H 1.09003 * 109.46870 * 304.99483 * 14 13 3 36 36 H 1.08996 * 109.46790 * 185.00018 * 14 13 3 37 37 H 1.09005 * 109.46961 * 300.00057 * 16 15 14 38 38 H 1.09002 * 109.47035 * 59.99858 * 16 15 14 39 39 H 1.07997 * 119.97176 * 359.97438 * 18 17 16 40 40 H 1.08004 * 120.02131 * 180.25716 * 19 18 17 41 41 H 1.08996 * 109.47361 * 59.99833 * 22 21 20 42 42 H 1.08996 * 109.46872 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.46693 * 299.99702 * 22 21 20 44 44 H 1.08001 * 120.02266 * 179.97438 * 23 20 19 45 45 H 1.07998 * 119.97063 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6016 2.0912 -1.2184 5 6 2.3008 1.4917 -2.4113 6 1 3.0465 0.7233 -2.2703 7 6 1.9885 1.9242 -3.6827 8 7 1.0802 2.8597 -3.8544 9 14 2.8546 1.1806 -5.1614 10 1 3.8254 0.1551 -4.7022 11 1 1.8520 0.5485 -6.0560 12 1 3.5752 2.2477 -5.9012 13 6 1.5736 2.1010 1.2027 14 6 2.2314 1.4825 2.4378 15 8 3.6443 1.6874 2.3781 16 6 4.3579 1.1443 3.4906 17 6 5.8307 1.4163 3.3239 18 6 6.6315 0.5010 2.6659 19 6 7.9808 0.7508 2.5069 20 6 8.5345 1.9154 3.0183 21 8 9.8629 2.1603 2.8687 22 6 10.6299 1.1753 2.1734 23 6 7.7300 2.8295 3.6830 24 6 6.3802 2.5778 3.8345 25 1 -0.3634 0.5227 -0.8849 26 1 -0.3632 -1.0276 -0.0102 27 1 -0.3633 0.5049 0.8950 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.5231 1.9942 -1.3427 31 1 1.8644 3.1458 -1.1355 32 1 0.8602 3.1638 -4.7489 33 1 0.4899 2.0234 1.2908 34 1 1.8577 3.1506 1.1270 35 1 2.0200 0.4135 2.4651 36 1 1.8334 1.9545 3.3361 37 1 4.0041 1.6089 4.4110 38 1 4.1907 0.0683 3.5392 39 1 6.2009 -0.4080 2.2726 40 1 8.6051 0.0374 1.9892 41 1 10.2384 1.0564 1.1631 42 1 11.6713 1.4934 2.1248 43 1 10.5652 0.2244 2.7023 44 1 8.1589 3.7366 4.0824 45 1 5.7536 3.2889 4.3523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610432764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -50.889854 kcal Electronic energy + Delta-G solvation = -23243.224426 eV Core-core repulsion = 19840.550237 eV Total energy + Delta-G solvation = -3402.674189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20281 -38.38405 -37.51252 -36.29894 -32.60193 -31.49437 -31.06295 -29.77421 -28.81427 -27.69993 -25.82490 -25.04286 -23.40782 -22.70122 -21.94557 -21.19423 -19.03565 -18.25663 -16.50412 -16.45954 -16.16130 -15.86059 -15.67963 -15.66473 -14.76869 -14.53574 -14.46746 -14.10147 -13.67718 -13.43889 -13.30275 -12.89274 -12.70756 -12.48239 -12.16693 -11.92502 -11.80360 -11.49175 -11.28903 -11.23308 -11.05326 -10.92929 -10.83493 -10.65984 -10.53164 -10.39983 -10.02266 -9.61035 -9.25726 -9.09442 -9.01534 -8.36571 -8.20465 -7.03011 -5.95759 -3.95661 1.30320 1.34996 3.13721 3.34759 3.42057 3.47487 3.58165 4.27932 4.48433 4.69486 4.80616 4.91963 4.96971 4.99123 5.03972 5.21788 5.25844 5.30646 5.39618 5.41078 5.52075 5.58774 5.62836 5.68293 5.76319 5.83652 5.98105 6.00327 6.08497 6.20011 6.24699 6.31018 6.40353 6.51344 6.62509 6.69232 6.74298 6.95091 7.27992 7.39361 7.50561 7.57038 7.90563 8.20939 8.31370 8.66349 9.13115 9.67987 11.15083 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.003667 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.099486 B = 7634.346146 C = 9179.037283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 N -0.525 5.525 4 C 0.188 3.812 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.051 3.949 14 C 0.069 3.931 15 O -0.357 6.357 16 C 0.104 3.896 17 C -0.118 4.118 18 C -0.054 4.054 19 C -0.210 4.210 20 C 0.127 3.873 21 O -0.320 6.320 22 C 0.027 3.973 23 C -0.156 4.156 24 C -0.060 4.060 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.001 0.999 31 H 0.024 0.976 32 H 0.259 0.741 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.863 -4.818 17.344 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.249 5.249 4 C 0.063 3.937 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.078 4.078 14 C -0.008 4.008 15 O -0.276 6.276 16 C 0.027 3.973 17 C -0.119 4.119 18 C -0.072 4.072 19 C -0.228 4.228 20 C 0.082 3.918 21 O -0.233 6.233 22 C -0.068 4.068 23 C -0.175 4.175 24 C -0.078 4.078 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.510 -4.464 17.113 21.101 hybrid contribution -0.649 -0.660 -0.926 1.309 sum 10.862 -5.124 16.186 20.155 Atomic orbital electron populations 1.22415 0.99722 1.00897 1.01906 1.21991 0.91717 0.91981 1.01188 1.62292 1.58878 1.01460 1.02222 1.19785 0.94585 0.93807 0.85507 1.21207 1.21323 1.21142 0.90109 0.91912 1.24977 0.95393 0.95348 0.98988 1.69969 1.32470 1.29605 1.22078 0.86487 0.79460 0.79095 0.82668 1.19704 1.21218 1.21091 1.22092 0.95932 0.99122 0.90622 1.22605 0.81440 0.99298 0.97462 1.88182 1.18120 1.78587 1.42710 1.21178 0.88515 0.97628 0.89946 1.19529 0.94575 0.95886 1.01890 1.20873 0.92481 0.99006 0.94831 1.21206 0.96763 0.98410 1.06456 1.19056 0.82981 0.94086 0.95702 1.86050 1.17470 1.46627 1.73197 1.23052 0.95656 0.91742 0.96359 1.20369 0.93099 1.00058 1.03942 1.20848 0.93734 0.95709 0.97520 0.91257 0.93516 0.93812 0.90178 0.93187 0.98086 0.95786 0.93127 0.94025 0.90765 0.93564 0.94168 0.93244 0.93090 0.85506 0.85450 0.92406 0.88368 0.92724 0.85249 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 9.26 37.16 0.34 -3.08 16 2 C 0.06 1.18 5.68 -3.82 -0.02 1.15 16 3 N -0.52 -11.64 4.64 -236.07 -1.10 -12.73 16 4 C 0.19 4.98 4.54 -4.98 -0.02 4.96 16 5 C -0.50 -14.32 8.39 -34.44 -0.29 -14.61 16 6 H 0.06 1.81 7.39 -52.48 -0.39 1.42 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 C 0.05 0.94 5.12 -3.82 -0.02 0.92 16 14 C 0.07 1.05 6.00 37.16 0.22 1.28 16 15 O -0.36 -6.06 10.27 -35.23 -0.36 -6.42 16 16 C 0.10 1.35 6.06 36.01 0.22 1.57 16 17 C -0.12 -1.58 5.51 -104.60 -0.58 -2.16 16 18 C -0.05 -0.70 9.69 -39.60 -0.38 -1.08 16 19 C -0.21 -2.55 9.04 -39.43 -0.36 -2.91 16 20 C 0.13 1.60 6.69 -39.22 -0.26 1.34 16 21 O -0.32 -3.74 10.50 -19.43 -0.20 -3.95 16 22 C 0.03 0.21 9.81 101.05 0.99 1.20 16 23 C -0.16 -1.91 9.99 -39.44 -0.39 -2.31 16 24 C -0.06 -0.74 9.69 -39.61 -0.38 -1.12 16 25 H 0.07 1.45 6.29 -51.93 -0.33 1.12 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.71 6.33 -51.93 -0.33 0.38 16 28 H 0.08 1.73 6.98 -51.93 -0.36 1.37 16 29 H 0.05 0.87 6.32 -51.93 -0.33 0.54 16 30 H 0.00 0.04 6.02 -51.93 -0.31 -0.27 16 31 H 0.02 0.69 7.91 -51.93 -0.41 0.28 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.04 0.73 6.05 -51.93 -0.31 0.41 16 34 H 0.07 1.44 7.92 -51.93 -0.41 1.03 16 35 H 0.05 0.67 6.31 -51.93 -0.33 0.34 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 41 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -32.72 362.69 -8.66 -41.38 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.15 Total: -1.00 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.03 Total: -13.39 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.36 Total: -39.16 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.57 Total: -10.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.72 -8.66 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610432764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.513 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds