Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.46966 * 2 1 4 4 C 1.46896 * 110.99896 * 297.32155 * 3 2 1 5 5 C 1.50701 * 109.46985 * 292.71430 * 4 3 2 6 6 H 1.08003 * 120.00005 * 355.02047 * 5 4 3 7 7 C 1.37880 * 120.00215 * 175.02860 * 5 4 3 8 8 N 1.31512 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46746 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47248 * 119.99631 * 9 7 5 12 12 H 1.48499 * 109.46988 * 239.99923 * 9 7 5 13 13 C 1.46898 * 110.99617 * 61.27367 * 3 2 1 14 14 C 1.53001 * 109.47402 * 66.04859 * 13 3 2 15 15 O 1.42897 * 109.47192 * 64.99717 * 14 13 3 16 16 C 1.42896 * 113.99967 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47107 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94416 * 269.72373 * 17 16 15 19 19 C 1.38147 * 120.04845 * 179.72560 * 18 17 16 20 20 C 1.38726 * 119.94753 * 0.57412 * 19 18 17 21 21 O 1.35901 * 120.05584 * 179.68502 * 20 19 18 22 22 C 1.42906 * 116.99949 * 0.02562 * 21 20 19 23 23 C 1.38731 * 119.88879 * 359.69892 * 20 19 18 24 24 C 1.38139 * 119.94533 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.47262 * 59.43095 * 1 2 3 26 26 H 1.08998 * 109.46603 * 179.42971 * 1 2 3 27 27 H 1.08993 * 109.47090 * 299.42735 * 1 2 3 28 28 H 1.08996 * 109.47424 * 240.00051 * 2 1 3 29 29 H 1.08999 * 109.47390 * 119.99589 * 2 1 3 30 30 H 1.08998 * 109.47430 * 52.71461 * 4 3 2 31 31 H 1.09000 * 109.47277 * 172.71802 * 4 3 2 32 32 H 0.97004 * 120.00277 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47138 * 306.04600 * 13 3 2 34 34 H 1.09001 * 109.47103 * 186.04635 * 13 3 2 35 35 H 1.09003 * 109.46870 * 304.99483 * 14 13 3 36 36 H 1.08996 * 109.46790 * 185.00018 * 14 13 3 37 37 H 1.09005 * 109.46961 * 300.00057 * 16 15 14 38 38 H 1.09002 * 109.47035 * 59.99858 * 16 15 14 39 39 H 1.07997 * 119.97176 * 359.97438 * 18 17 16 40 40 H 1.08004 * 120.02131 * 180.25716 * 19 18 17 41 41 H 1.08996 * 109.47361 * 59.99833 * 22 21 20 42 42 H 1.08996 * 109.46872 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.46693 * 299.99702 * 22 21 20 44 44 H 1.08001 * 120.02266 * 179.97438 * 23 20 19 45 45 H 1.07998 * 119.97063 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6016 2.0912 -1.2184 5 6 2.3008 1.4917 -2.4113 6 1 3.0465 0.7233 -2.2703 7 6 1.9885 1.9242 -3.6827 8 7 1.0802 2.8597 -3.8544 9 14 2.8546 1.1806 -5.1614 10 1 3.8254 0.1551 -4.7022 11 1 1.8520 0.5485 -6.0560 12 1 3.5752 2.2477 -5.9012 13 6 1.5736 2.1010 1.2027 14 6 2.2314 1.4825 2.4378 15 8 3.6443 1.6874 2.3781 16 6 4.3579 1.1443 3.4906 17 6 5.8307 1.4163 3.3239 18 6 6.6315 0.5010 2.6659 19 6 7.9808 0.7508 2.5069 20 6 8.5345 1.9154 3.0183 21 8 9.8629 2.1603 2.8687 22 6 10.6299 1.1753 2.1734 23 6 7.7300 2.8295 3.6830 24 6 6.3802 2.5778 3.8345 25 1 -0.3634 0.5227 -0.8849 26 1 -0.3632 -1.0276 -0.0102 27 1 -0.3633 0.5049 0.8950 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.5231 1.9942 -1.3427 31 1 1.8644 3.1458 -1.1355 32 1 0.8602 3.1638 -4.7489 33 1 0.4899 2.0234 1.2908 34 1 1.8577 3.1506 1.1270 35 1 2.0200 0.4135 2.4651 36 1 1.8334 1.9545 3.3361 37 1 4.0041 1.6089 4.4110 38 1 4.1907 0.0683 3.5392 39 1 6.2009 -0.4080 2.2726 40 1 8.6051 0.0374 1.9892 41 1 10.2384 1.0564 1.1631 42 1 11.6713 1.4934 2.1248 43 1 10.5652 0.2244 2.7023 44 1 8.1589 3.7366 4.0824 45 1 5.7536 3.2889 4.3523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610432764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -72.117711 kcal Electronic energy + Delta-G solvation = -23244.144935 eV Core-core repulsion = 19840.550237 eV Total energy + Delta-G solvation = -3403.594698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08039 -39.62164 -38.72364 -37.57344 -34.75295 -32.53181 -32.00164 -31.17937 -30.53700 -28.47967 -27.59513 -26.07282 -25.09925 -23.65679 -23.60289 -22.12205 -20.66352 -19.11041 -18.35629 -17.65021 -17.48601 -17.00894 -16.76079 -16.63863 -16.45433 -16.09452 -15.56879 -15.40553 -14.81871 -14.60318 -14.50017 -14.34279 -14.05791 -13.63973 -13.49097 -13.25353 -13.08964 -12.86255 -12.77819 -12.74112 -12.51499 -12.33017 -12.22165 -12.10907 -11.88419 -11.75722 -11.71661 -11.36495 -11.12204 -10.58808 -10.37177 -9.94499 -9.13538 -8.79099 -8.17260 -6.26319 0.36169 0.40977 1.39157 1.40403 1.53795 2.36993 2.41381 2.60292 3.14624 3.21903 3.43235 3.83206 3.92680 3.99939 4.21914 4.24861 4.29124 4.33398 4.38370 4.40156 4.42518 4.51810 4.54961 4.58733 4.64448 4.66524 4.74238 4.77372 4.79136 4.95596 5.04205 5.05791 5.09769 5.25321 5.28477 5.38076 5.41212 5.53655 5.68163 5.70416 5.80389 6.12400 6.41983 6.43844 6.48475 6.77532 6.91507 7.42874 8.93315 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.003667 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.099486 B = 7634.346146 C = 9179.037283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.049 3.951 14 C 0.076 3.924 15 O -0.393 6.393 16 C 0.104 3.896 17 C -0.138 4.138 18 C -0.069 4.069 19 C -0.216 4.216 20 C 0.116 3.884 21 O -0.334 6.334 22 C 0.018 3.982 23 C -0.168 4.168 24 C -0.065 4.065 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.082 0.918 30 H -0.018 1.018 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.067 0.933 44 H 0.142 0.858 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.549 -6.175 18.356 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.263 5.263 4 C 0.078 3.922 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.206 1.206 13 C -0.080 4.080 14 C 0.000 4.000 15 O -0.313 6.313 16 C 0.028 3.972 17 C -0.138 4.138 18 C -0.087 4.087 19 C -0.235 4.235 20 C 0.070 3.930 21 O -0.248 6.248 22 C -0.076 4.076 23 C -0.187 4.187 24 C -0.083 4.083 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.000 1.000 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.076 0.924 42 H 0.139 0.861 43 H 0.086 0.914 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.202 -5.836 18.150 22.635 hybrid contribution -0.802 -0.226 -1.183 1.447 sum 11.399 -6.062 16.967 21.320 Atomic orbital electron populations 1.22292 0.98311 1.02321 1.00976 1.22001 0.92885 0.90377 1.01443 1.62175 1.59687 1.02601 1.01808 1.19399 0.93111 0.92236 0.87412 1.21474 1.21415 1.21142 0.91376 0.92530 1.25864 0.96026 0.95651 1.02076 1.70089 1.33755 1.30797 1.22999 0.85400 0.78485 0.78399 0.78747 1.18959 1.20163 1.20562 1.22182 0.97110 0.98124 0.90552 1.22545 0.80936 0.99957 0.96576 1.88126 1.18936 1.79376 1.44855 1.21338 0.87862 0.98446 0.89592 1.19754 0.95065 0.96453 1.02540 1.21089 0.93002 0.99453 0.95158 1.21432 0.96827 0.98773 1.06444 1.19278 0.83626 0.94310 0.95739 1.86032 1.17141 1.48037 1.73619 1.23333 0.96293 0.91854 0.96142 1.20647 0.93340 1.00642 1.04021 1.21098 0.94042 0.95792 0.97410 0.95040 0.90817 0.91833 0.92752 0.89996 1.00016 0.99235 0.92816 0.92800 0.92660 0.92294 0.90841 0.90928 0.91865 0.84963 0.83702 0.92433 0.86113 0.91449 0.83977 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 9.26 71.98 0.67 -5.59 16 2 C 0.06 2.34 5.68 86.30 0.49 2.83 16 3 N -0.54 -24.09 4.64 -900.79 -4.18 -28.27 16 4 C 0.20 11.27 4.54 85.56 0.39 11.66 16 5 C -0.52 -30.34 8.39 25.60 0.21 -30.12 16 6 H 0.06 3.33 7.39 -2.91 -0.02 3.30 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.05 1.76 5.12 86.30 0.44 2.20 16 14 C 0.08 2.15 6.00 71.98 0.43 2.58 16 15 O -0.39 -12.74 10.27 -148.98 -1.53 -14.27 16 16 C 0.10 2.47 6.06 71.24 0.43 2.90 16 17 C -0.14 -3.53 5.51 -19.85 -0.11 -3.64 16 18 C -0.07 -1.74 9.69 22.26 0.22 -1.53 16 19 C -0.22 -5.10 9.04 22.36 0.20 -4.90 16 20 C 0.12 2.85 6.69 22.50 0.15 3.00 16 21 O -0.33 -7.52 10.50 -92.43 -0.97 -8.49 16 22 C 0.02 0.26 9.81 113.37 1.11 1.37 16 23 C -0.17 -4.00 9.99 22.36 0.22 -3.78 16 24 C -0.07 -1.55 9.69 22.25 0.22 -1.33 16 25 H 0.03 1.32 6.29 -2.38 -0.01 1.30 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.93 6.33 -2.39 -0.02 1.92 16 28 H 0.05 2.35 6.98 -2.39 -0.02 2.33 16 29 H 0.08 2.63 6.32 -2.39 -0.02 2.62 16 30 H -0.02 -1.03 6.02 -2.39 -0.01 -1.04 16 31 H -0.01 -0.63 7.91 -2.39 -0.02 -0.65 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.05 1.81 6.05 -2.39 -0.01 1.80 16 34 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 35 H 0.06 1.50 6.31 -2.39 -0.02 1.49 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 38 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 39 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.15 2.73 6.30 -2.91 -0.02 2.71 16 41 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 42 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 0.78 7.66 -2.38 -0.02 0.76 16 44 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -72.15 362.69 2.13 -70.02 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.96 Total: 14.46 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 5.54 Total: -23.81 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -3.90 Total: -85.60 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -2.50 Total: -22.76 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.15 2.13 -70.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610432764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.099 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds