Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99742 * 2 1 4 4 C 1.38734 * 120.05238 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94694 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05117 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94268 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47042 * 90.00262 * 7 6 5 9 9 C 1.42901 * 113.99991 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47210 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.46850 * 64.99841 * 10 9 8 12 12 C 1.46903 * 110.99820 * 66.04976 * 11 10 9 13 13 C 1.46900 * 111.00093 * 189.99621 * 11 10 9 14 14 H 1.09000 * 109.46640 * 55.00217 * 13 11 10 15 15 C 1.52995 * 109.47259 * 295.00639 * 13 11 10 16 16 C 1.50695 * 109.47152 * 175.00052 * 13 11 10 17 17 H 1.07997 * 120.00446 * 5.59093 * 16 13 11 18 18 C 1.37883 * 119.99801 * 185.58411 * 16 13 11 19 19 N 1.31518 * 119.99963 * 198.29625 * 18 16 13 20 20 Si 1.86803 * 120.00001 * 18.57489 * 18 16 13 21 21 H 1.48502 * 109.46996 * 179.72365 * 20 18 16 22 22 H 1.48498 * 109.46761 * 299.71964 * 20 18 16 23 23 H 1.48496 * 109.47235 * 59.72150 * 20 18 16 24 24 C 1.38268 * 120.11214 * 0.25286 * 6 5 4 25 25 C 1.38145 * 120.05466 * 359.45455 * 24 6 5 26 26 H 1.08994 * 109.47102 * 59.99882 * 1 2 3 27 27 H 1.08995 * 109.47264 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46599 * 299.99872 * 1 2 3 29 29 H 1.08002 * 120.03003 * 359.97438 * 4 3 2 30 30 H 1.07994 * 119.97606 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47161 * 329.99997 * 7 6 5 32 32 H 1.08997 * 109.46938 * 210.00384 * 7 6 5 33 33 H 1.09002 * 109.46817 * 59.99597 * 9 8 7 34 34 H 1.09002 * 109.46961 * 300.00127 * 9 8 7 35 35 H 1.09003 * 109.47150 * 305.00391 * 10 9 8 36 36 H 1.08997 * 109.46908 * 184.99798 * 10 9 8 37 37 H 1.08998 * 109.47081 * 183.95562 * 12 11 10 38 38 H 1.09008 * 109.46951 * 303.94762 * 12 11 10 39 39 H 1.08997 * 109.47794 * 63.94939 * 12 11 10 40 40 H 1.09000 * 109.47599 * 54.31301 * 15 13 11 41 41 H 1.09005 * 109.47053 * 174.31555 * 15 13 11 42 42 H 1.08997 * 109.47167 * 294.31181 * 15 13 11 43 43 H 0.97000 * 119.99730 * 355.23455 * 19 18 16 44 44 H 1.07998 * 119.96938 * 179.69763 * 24 6 5 45 45 H 1.08003 * 120.02702 * 180.25010 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 8 4.2017 5.4444 -1.3441 9 6 4.8489 6.7136 -1.4559 10 6 5.0278 7.0665 -2.9338 11 7 3.7099 7.2460 -3.5573 12 6 3.0188 8.4163 -2.9998 13 6 3.8284 7.3510 -5.0178 14 1 4.3601 6.4809 -5.4026 15 6 4.6020 8.6213 -5.3767 16 6 2.4528 7.4106 -5.6303 17 1 1.5808 7.4652 -4.9955 18 6 2.3075 7.3955 -7.0014 19 7 1.1822 7.8015 -7.5479 20 14 3.7060 6.7910 -8.0823 21 1 3.2985 6.8684 -9.5082 22 1 4.9038 7.6408 -7.8629 23 1 4.0272 5.3834 -7.7349 24 6 1.9211 3.6048 0.0080 25 6 1.2915 2.3751 0.0013 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 4.0209 0.3799 -0.0005 30 1 5.1345 2.5750 0.0000 31 1 4.9443 4.9376 0.5161 32 1 3.3583 5.7457 0.5177 33 1 5.8250 6.6674 -0.9729 34 1 4.2394 7.4762 -0.9710 35 1 5.5614 6.2605 -3.4378 36 1 5.5995 7.9904 -3.0201 37 1 2.0186 8.4855 -3.4274 38 1 2.9447 8.3128 -1.9172 39 1 3.5803 9.3189 -3.2408 40 1 5.5575 8.6252 -4.8523 41 1 4.7776 8.6480 -6.4522 42 1 4.0219 9.4956 -5.0814 43 1 0.4305 8.0460 -6.9856 44 1 1.3343 4.5114 0.0141 45 1 0.2129 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610728944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -67.837309 kcal Electronic energy + Delta-G solvation = -23374.534329 eV Core-core repulsion = 19971.125243 eV Total energy + Delta-G solvation = -3403.409086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10757 -39.67052 -38.82275 -37.70000 -34.84718 -32.67007 -32.06470 -31.54177 -29.66574 -28.44543 -26.88753 -26.74721 -26.00174 -23.63157 -22.91146 -22.14252 -20.82738 -19.37292 -19.13751 -17.60198 -17.52900 -17.11292 -16.80681 -16.65593 -16.14090 -15.70110 -15.53321 -15.37285 -15.10684 -14.67795 -14.44900 -14.35221 -14.07271 -13.88101 -13.60148 -13.37560 -13.16207 -12.98516 -12.82206 -12.66452 -12.34379 -12.29439 -12.18779 -11.98472 -11.76292 -11.74464 -11.61916 -11.46455 -10.99435 -10.41042 -10.29832 -9.97421 -9.16454 -8.85738 -8.69648 -6.28155 0.33333 0.37894 1.44416 1.54765 1.72415 2.34477 2.50171 2.57500 3.10984 3.18797 3.34212 3.79888 3.89750 3.97272 4.19248 4.25394 4.29752 4.35637 4.36984 4.39264 4.41857 4.51811 4.53801 4.58801 4.61480 4.64964 4.69089 4.72023 4.74703 4.80565 4.88711 4.97942 5.06244 5.09982 5.24057 5.25821 5.35243 5.53141 5.64966 5.77633 5.86014 6.09087 6.33282 6.39386 6.42728 6.68821 6.78475 7.48102 8.68632 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003548 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.940521 B = 7890.449803 C = 8925.538047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.166 4.166 5 C -0.063 4.063 6 C -0.138 4.138 7 C 0.104 3.896 8 O -0.393 6.393 9 C 0.071 3.929 10 C 0.048 3.952 11 N -0.539 5.539 12 C 0.044 3.956 13 C 0.186 3.814 14 H 0.027 0.973 15 C -0.178 4.178 16 C -0.584 4.584 17 H 0.021 0.979 18 C -0.023 4.023 19 N -0.942 5.942 20 Si 1.083 2.917 21 H -0.290 1.290 22 H -0.240 1.240 23 H -0.271 1.271 24 C -0.071 4.071 25 C -0.218 4.218 26 H 0.056 0.944 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.039 0.961 43 H 0.249 0.751 44 H 0.128 0.872 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -9.949 19.952 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.185 4.185 5 C -0.081 4.081 6 C -0.138 4.138 7 C 0.028 3.972 8 O -0.313 6.313 9 C -0.005 4.005 10 C -0.080 4.080 11 N -0.262 5.262 12 C -0.104 4.104 13 C 0.078 3.922 14 H 0.045 0.955 15 C -0.237 4.237 16 C -0.622 4.622 17 H 0.040 0.960 18 C -0.220 4.220 19 N -0.579 5.579 20 Si 0.905 3.095 21 H -0.216 1.216 22 H -0.164 1.164 23 H -0.196 1.196 24 C -0.090 4.090 25 C -0.236 4.236 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.146 0.854 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.216 -10.864 18.355 22.517 hybrid contribution -1.148 1.342 1.347 2.221 sum 6.068 -9.522 19.702 22.708 Atomic orbital electron populations 1.23328 0.76633 1.05606 1.02045 1.86031 1.23323 1.26726 1.88634 1.19288 0.92940 0.84521 0.96178 1.20671 0.91538 0.99309 1.06966 1.21110 1.00878 0.90530 0.95588 1.19752 0.93772 0.95110 1.05188 1.21324 0.99444 0.92153 0.84253 1.88120 1.80554 1.36515 1.26135 1.22622 0.96977 0.85161 0.95755 1.22245 0.90790 1.00352 0.94590 1.62058 1.19063 1.39989 1.05129 1.22150 0.98347 0.91045 0.98896 1.19463 0.94671 0.92840 0.85225 0.95540 1.22699 0.99041 1.00386 1.01564 1.22161 0.92643 1.54244 0.93151 0.96042 1.27097 1.03492 0.93230 0.98213 1.71003 1.05345 1.42722 1.38781 0.83602 0.73964 0.77820 0.74137 1.21593 1.16417 1.19612 1.21069 0.94431 0.97662 0.95805 1.21421 1.01017 0.92069 1.09112 0.92568 0.86009 0.91507 0.83751 0.83284 0.90614 0.92306 0.90428 0.92937 0.91219 0.92271 0.94602 0.90972 0.95781 0.92394 0.93050 0.94167 0.94173 0.85419 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.53 10.50 -92.42 -0.97 -8.50 16 3 C 0.12 2.87 6.69 22.51 0.15 3.02 16 4 C -0.17 -3.88 9.99 22.37 0.22 -3.65 16 5 C -0.06 -1.45 9.69 22.26 0.22 -1.23 16 6 C -0.14 -3.51 5.51 -19.85 -0.11 -3.62 16 7 C 0.10 2.45 6.06 71.24 0.43 2.88 16 8 O -0.39 -12.32 10.27 -148.98 -1.53 -13.85 16 9 C 0.07 1.88 6.00 71.98 0.43 2.31 16 10 C 0.05 1.56 4.79 86.30 0.41 1.98 16 11 N -0.54 -22.89 4.69 -901.48 -4.23 -27.12 16 12 C 0.04 1.73 8.70 127.69 1.11 2.84 16 13 C 0.19 8.97 1.93 44.17 0.09 9.06 16 14 H 0.03 1.31 6.67 -2.39 -0.02 1.29 16 15 C -0.18 -7.53 8.12 71.98 0.58 -6.95 16 16 C -0.58 -34.20 8.31 25.60 0.21 -33.99 16 17 H 0.02 1.40 6.78 -2.91 -0.02 1.38 16 18 C -0.02 -1.36 5.34 84.66 0.45 -0.91 16 19 N -0.94 -60.46 13.70 21.45 0.29 -60.16 16 20 Si 1.08 51.18 26.46 68.60 1.82 52.99 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.24 -9.88 5.53 99.48 0.55 -9.33 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 C -0.07 -1.86 9.69 22.25 0.22 -1.64 16 25 C -0.22 -5.28 9.04 22.36 0.20 -5.08 16 26 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 27 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.31 6.26 -2.39 -0.01 1.30 16 35 H 0.07 2.33 8.00 -2.39 -0.02 2.31 16 36 H 0.06 1.70 6.81 -2.39 -0.02 1.68 16 37 H 0.04 1.66 6.43 -2.39 -0.02 1.64 16 38 H 0.07 2.38 6.21 -2.38 -0.01 2.36 16 39 H 0.02 0.89 6.41 -2.39 -0.02 0.87 16 40 H 0.06 2.02 6.49 -2.39 -0.02 2.01 16 41 H 0.05 2.21 4.88 -2.38 -0.01 2.20 16 42 H 0.04 1.74 6.71 -2.39 -0.02 1.73 16 43 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 44 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.14 2.84 6.30 -2.91 -0.02 2.82 16 Total: -1.00 -73.56 353.66 1.89 -71.67 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.78 Total: 18.57 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 5.73 Total: -33.61 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.93 Total: -87.28 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -2.50 Total: -22.34 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 1.82 Total: 52.99 kcal Total: -73.56 1.89 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610728944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.832 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds