Wall clock time and date at job start Tue Mar 31 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 117.00030 * 2 1 4 4 C 1.38733 * 120.05589 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93893 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.06091 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94950 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47204 * 89.99509 * 7 6 5 9 9 C 1.42899 * 113.99989 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47239 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46587 * 65.00370 * 10 9 8 12 12 C 1.46903 * 111.00300 * 66.04877 * 11 10 9 13 13 C 1.46899 * 110.99725 * 189.99739 * 11 10 9 14 14 H 1.08993 * 109.47435 * 300.00257 * 13 11 10 15 15 C 1.52999 * 109.46919 * 60.00164 * 13 11 10 16 16 C 1.50698 * 109.47062 * 179.97438 * 13 11 10 17 17 H 1.08002 * 120.00423 * 332.58335 * 16 13 11 18 18 C 1.37878 * 119.99970 * 152.57752 * 16 13 11 19 19 N 1.31513 * 120.00438 * 174.17983 * 18 16 13 20 20 Si 1.86804 * 119.99970 * 354.18254 * 18 16 13 21 21 H 1.48492 * 109.47111 * 274.23068 * 20 18 16 22 22 H 1.48499 * 109.47141 * 34.23096 * 20 18 16 23 23 H 1.48500 * 109.47317 * 154.23044 * 20 18 16 24 24 C 1.38270 * 120.11360 * 0.25342 * 6 5 4 25 25 C 1.38146 * 120.05110 * 359.44877 * 24 6 5 26 26 H 1.09006 * 109.47304 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47611 * 300.00107 * 1 2 3 28 28 H 1.08994 * 109.47096 * 60.00523 * 1 2 3 29 29 H 1.07995 * 120.02570 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.96652 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46550 * 329.99934 * 7 6 5 32 32 H 1.09002 * 109.47744 * 210.00373 * 7 6 5 33 33 H 1.09008 * 109.47003 * 60.00402 * 9 8 7 34 34 H 1.08996 * 109.47598 * 300.01006 * 9 8 7 35 35 H 1.08996 * 109.46939 * 305.00487 * 10 9 8 36 36 H 1.08997 * 109.47048 * 185.00499 * 10 9 8 37 37 H 1.09000 * 109.47227 * 183.95336 * 12 11 10 38 38 H 1.09004 * 109.46488 * 303.95215 * 12 11 10 39 39 H 1.08996 * 109.47239 * 63.94829 * 12 11 10 40 40 H 1.09004 * 109.47361 * 172.84971 * 15 13 11 41 41 H 1.09004 * 109.47481 * 292.85340 * 15 13 11 42 42 H 1.09005 * 109.47422 * 52.85551 * 15 13 11 43 43 H 0.97001 * 120.00460 * 180.02562 * 19 18 16 44 44 H 1.07994 * 119.97545 * 179.70822 * 24 6 5 45 45 H 1.08001 * 120.02859 * 180.25112 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 8 4.2027 5.4439 -1.3442 9 6 4.8499 6.7130 -1.4559 10 6 5.0290 7.0659 -2.9338 11 7 3.7111 7.2455 -3.5574 12 6 3.0199 8.4158 -3.0000 13 6 3.8297 7.3505 -5.0179 14 1 4.4557 8.2061 -5.2710 15 6 4.4642 6.0729 -5.5711 16 6 2.4609 7.5328 -5.6212 17 1 1.5907 7.1435 -5.1136 18 6 2.3193 8.1968 -6.8212 19 7 1.1423 8.2569 -7.4048 20 14 3.7995 9.0111 -7.6184 21 1 3.9709 10.3779 -7.0639 22 1 5.0167 8.2075 -7.3392 23 1 3.5878 9.0952 -9.0858 24 6 1.9210 3.6048 0.0069 25 6 1.2914 2.3751 0.0002 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 4.0208 0.3800 0.0014 30 1 5.1344 2.5751 0.0011 31 1 4.9436 4.9379 0.5169 32 1 3.3577 5.7460 0.5169 33 1 5.8256 6.6671 -0.9721 34 1 4.2400 7.4758 -0.9718 35 1 5.5626 6.2600 -3.4376 36 1 5.6007 7.9898 -3.0201 37 1 2.0198 8.4850 -3.4278 38 1 2.9457 8.3123 -1.9174 39 1 3.5815 9.3183 -3.2411 40 1 4.4367 6.0958 -6.6605 41 1 5.4991 6.0062 -5.2351 42 1 3.9090 5.2064 -5.2118 43 1 1.0428 8.7237 -8.2492 44 1 1.3341 4.5114 0.0121 45 1 0.2128 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610728945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:57 Heat of formation + Delta-G solvation = -46.338689 kcal Electronic energy + Delta-G solvation = -23386.880230 eV Core-core repulsion = 19984.403394 eV Total energy + Delta-G solvation = -3402.476835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21546 -38.38913 -37.48087 -36.32267 -32.71637 -31.46781 -31.07551 -30.21642 -28.65690 -27.67584 -25.53029 -24.95565 -24.24538 -22.71633 -21.43135 -21.17033 -19.16263 -18.26649 -16.91943 -16.51546 -16.41717 -15.86648 -15.76971 -15.63780 -14.78962 -14.44298 -14.22058 -13.91289 -13.66644 -13.46830 -13.28116 -12.85042 -12.63058 -12.49975 -12.33529 -12.12077 -11.92542 -11.60056 -11.27722 -11.24283 -11.01155 -10.95142 -10.86018 -10.69424 -10.46404 -10.21495 -10.00390 -9.67809 -9.30572 -9.03203 -8.98278 -8.53030 -8.22057 -7.19669 -6.04104 -4.01255 1.28591 1.33463 3.12943 3.28066 3.37172 3.39660 3.55796 4.23606 4.43620 4.68582 4.79406 4.84745 4.91666 4.96363 4.97537 5.19810 5.25414 5.29175 5.30173 5.37965 5.49113 5.56394 5.58015 5.66091 5.72061 5.98488 5.99387 6.17831 6.18464 6.25515 6.30156 6.35500 6.53428 6.60628 6.67730 6.68783 6.74756 6.94917 7.05580 7.26851 7.39137 7.50290 7.71396 8.06218 8.20740 8.72940 9.07177 9.60125 11.09088 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003330 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.370042 B = 8406.057600 C = 9233.495337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.127 3.873 4 C -0.157 4.157 5 C -0.060 4.060 6 C -0.119 4.119 7 C 0.104 3.896 8 O -0.357 6.357 9 C 0.069 3.931 10 C 0.047 3.953 11 N -0.520 5.520 12 C 0.039 3.961 13 C 0.181 3.819 14 H -0.004 1.004 15 C -0.133 4.133 16 C -0.499 4.499 17 H 0.081 0.919 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.870 3.130 21 H -0.279 1.279 22 H -0.264 1.264 23 H -0.288 1.288 24 C -0.053 4.053 25 C -0.209 4.209 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.007 0.993 40 H 0.047 0.953 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.263 0.737 44 H 0.128 0.872 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -10.578 18.214 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.175 4.175 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.028 3.972 8 O -0.276 6.276 9 C -0.008 4.008 10 C -0.081 4.081 11 N -0.245 5.245 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.013 0.987 15 C -0.191 4.191 16 C -0.537 4.537 17 H 0.099 0.901 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.698 3.302 21 H -0.205 1.205 22 H -0.189 1.189 23 H -0.214 1.214 24 C -0.071 4.071 25 C -0.228 4.228 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.854 -11.227 17.981 21.546 hybrid contribution 0.998 1.576 -0.585 1.955 sum 4.852 -9.651 17.396 20.477 Atomic orbital electron populations 1.23058 0.78383 1.03824 1.01568 1.86047 1.21433 1.27108 1.88761 1.19063 0.92409 0.84088 0.96213 1.20367 0.91335 0.98536 1.07288 1.20837 0.99800 0.90909 0.96304 1.19515 0.93568 0.94292 1.04579 1.21181 0.97994 0.92396 0.85659 1.88167 1.79974 1.35773 1.23704 1.22602 0.95055 0.85544 0.97640 1.22178 0.93056 0.99780 0.93133 1.62032 1.16181 1.39692 1.06595 1.22219 1.01000 0.90242 0.97504 1.19698 0.96880 0.92574 0.83390 0.98684 1.22010 0.96852 1.00259 0.99975 1.20914 0.92036 1.35545 1.05238 0.90101 1.24957 0.95394 0.96012 0.96724 1.69897 1.22929 1.43224 1.17719 0.86985 0.84373 0.80305 0.78586 1.20514 1.18885 1.21449 1.20887 0.93937 0.97251 0.95062 1.21221 1.00082 0.92263 1.09236 0.88348 0.92702 0.92364 0.85263 0.85345 0.93246 0.93007 0.94086 0.93435 0.90069 0.94734 0.89886 0.93806 0.97406 0.93423 0.96162 0.92532 0.92717 0.85447 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.69 10.50 -19.43 -0.20 -3.89 16 3 C 0.13 1.58 6.69 -39.21 -0.26 1.32 16 4 C -0.16 -1.87 9.99 -39.43 -0.39 -2.27 16 5 C -0.06 -0.72 9.69 -39.61 -0.38 -1.11 16 6 C -0.12 -1.55 5.51 -104.60 -0.58 -2.13 16 7 C 0.10 1.32 6.06 36.00 0.22 1.53 16 8 O -0.36 -5.85 10.27 -35.23 -0.36 -6.22 16 9 C 0.07 1.01 6.00 37.16 0.22 1.23 16 10 C 0.05 0.83 5.16 -3.82 -0.02 0.81 16 11 N -0.52 -11.23 4.57 -236.29 -1.08 -12.31 16 12 C 0.04 0.78 9.06 60.07 0.54 1.32 16 13 C 0.18 4.42 1.61 -68.87 -0.11 4.31 16 14 H 0.00 -0.11 5.71 -51.93 -0.30 -0.41 16 15 C -0.13 -3.02 8.43 37.16 0.31 -2.71 16 16 C -0.50 -14.13 7.57 -34.44 -0.26 -14.39 16 17 H 0.08 2.53 7.82 -52.49 -0.41 2.12 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 20 Si 0.87 21.70 26.37 -169.99 -4.48 17.21 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.33 6.39 56.52 0.36 -5.97 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.05 -0.68 9.69 -39.60 -0.38 -1.07 16 25 C -0.21 -2.52 9.04 -39.43 -0.36 -2.88 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 34 H 0.05 0.67 6.26 -51.93 -0.33 0.35 16 35 H 0.08 1.46 5.98 -51.93 -0.31 1.15 16 36 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.08 1.87 6.83 -51.93 -0.35 1.52 16 38 H 0.04 0.75 6.21 -51.93 -0.32 0.43 16 39 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.05 1.10 7.24 -51.93 -0.38 0.73 16 41 H 0.02 0.39 6.59 -51.93 -0.34 0.05 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -32.67 359.65 -7.75 -40.42 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.26 Total: -1.00 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.56 Total: -12.86 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.31 Total: -39.08 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.57 Total: -10.11 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.48 Total: 17.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.67 -7.75 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610728945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.920 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds