Wall clock time and date at job start Tue Mar 31 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 117.00030 * 2 1 4 4 C 1.38733 * 120.05589 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93893 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.06091 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94950 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47204 * 89.99509 * 7 6 5 9 9 C 1.42899 * 113.99989 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47239 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46587 * 65.00370 * 10 9 8 12 12 C 1.46903 * 111.00300 * 66.04877 * 11 10 9 13 13 C 1.46899 * 110.99725 * 189.99739 * 11 10 9 14 14 H 1.08993 * 109.47435 * 300.00257 * 13 11 10 15 15 C 1.52999 * 109.46919 * 60.00164 * 13 11 10 16 16 C 1.50698 * 109.47062 * 179.97438 * 13 11 10 17 17 H 1.08002 * 120.00423 * 332.58335 * 16 13 11 18 18 C 1.37878 * 119.99970 * 152.57752 * 16 13 11 19 19 N 1.31513 * 120.00438 * 174.17983 * 18 16 13 20 20 Si 1.86804 * 119.99970 * 354.18254 * 18 16 13 21 21 H 1.48492 * 109.47111 * 274.23068 * 20 18 16 22 22 H 1.48499 * 109.47141 * 34.23096 * 20 18 16 23 23 H 1.48500 * 109.47317 * 154.23044 * 20 18 16 24 24 C 1.38270 * 120.11360 * 0.25342 * 6 5 4 25 25 C 1.38146 * 120.05110 * 359.44877 * 24 6 5 26 26 H 1.09006 * 109.47304 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47611 * 300.00107 * 1 2 3 28 28 H 1.08994 * 109.47096 * 60.00523 * 1 2 3 29 29 H 1.07995 * 120.02570 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.96652 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46550 * 329.99934 * 7 6 5 32 32 H 1.09002 * 109.47744 * 210.00373 * 7 6 5 33 33 H 1.09008 * 109.47003 * 60.00402 * 9 8 7 34 34 H 1.08996 * 109.47598 * 300.01006 * 9 8 7 35 35 H 1.08996 * 109.46939 * 305.00487 * 10 9 8 36 36 H 1.08997 * 109.47048 * 185.00499 * 10 9 8 37 37 H 1.09000 * 109.47227 * 183.95336 * 12 11 10 38 38 H 1.09004 * 109.46488 * 303.95215 * 12 11 10 39 39 H 1.08996 * 109.47239 * 63.94829 * 12 11 10 40 40 H 1.09004 * 109.47361 * 172.84971 * 15 13 11 41 41 H 1.09004 * 109.47481 * 292.85340 * 15 13 11 42 42 H 1.09005 * 109.47422 * 52.85551 * 15 13 11 43 43 H 0.97001 * 120.00460 * 180.02562 * 19 18 16 44 44 H 1.07994 * 119.97545 * 179.70822 * 24 6 5 45 45 H 1.08001 * 120.02859 * 180.25112 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 8 4.2027 5.4439 -1.3442 9 6 4.8499 6.7130 -1.4559 10 6 5.0290 7.0659 -2.9338 11 7 3.7111 7.2455 -3.5574 12 6 3.0199 8.4158 -3.0000 13 6 3.8297 7.3505 -5.0179 14 1 4.4557 8.2061 -5.2710 15 6 4.4642 6.0729 -5.5711 16 6 2.4609 7.5328 -5.6212 17 1 1.5907 7.1435 -5.1136 18 6 2.3193 8.1968 -6.8212 19 7 1.1423 8.2569 -7.4048 20 14 3.7995 9.0111 -7.6184 21 1 3.9709 10.3779 -7.0639 22 1 5.0167 8.2075 -7.3392 23 1 3.5878 9.0952 -9.0858 24 6 1.9210 3.6048 0.0069 25 6 1.2914 2.3751 0.0002 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 4.0208 0.3800 0.0014 30 1 5.1344 2.5751 0.0011 31 1 4.9436 4.9379 0.5169 32 1 3.3577 5.7460 0.5169 33 1 5.8256 6.6671 -0.9721 34 1 4.2400 7.4758 -0.9718 35 1 5.5626 6.2600 -3.4376 36 1 5.6007 7.9898 -3.0201 37 1 2.0198 8.4850 -3.4278 38 1 2.9457 8.3123 -1.9174 39 1 3.5815 9.3183 -3.2411 40 1 4.4367 6.0958 -6.6605 41 1 5.4991 6.0062 -5.2351 42 1 3.9090 5.2064 -5.2118 43 1 1.0428 8.7237 -8.2492 44 1 1.3341 4.5114 0.0121 45 1 0.2128 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610728945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:56 Heat of formation + Delta-G solvation = -68.407399 kcal Electronic energy + Delta-G solvation = -23387.837201 eV Core-core repulsion = 19984.403394 eV Total energy + Delta-G solvation = -3403.433807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08150 -39.55762 -38.70138 -37.60110 -34.73374 -32.67328 -32.07187 -31.75978 -30.03453 -28.44462 -27.28702 -26.14686 -25.83338 -23.60413 -22.93961 -22.11267 -20.91661 -19.11677 -19.03295 -17.55800 -17.45644 -17.03522 -16.75141 -16.63134 -16.36151 -15.81465 -15.43111 -15.32241 -14.89263 -14.58728 -14.51152 -14.38796 -14.24436 -13.78805 -13.60058 -13.30450 -12.98825 -12.94265 -12.77899 -12.68242 -12.49276 -12.30706 -12.14487 -12.01922 -11.92120 -11.75078 -11.71447 -11.42210 -11.02822 -10.72655 -10.35945 -9.94686 -9.13761 -8.85569 -8.26917 -6.28989 0.36126 0.40680 1.32097 1.34303 1.45236 2.34325 2.36848 2.60346 3.05293 3.21699 3.35936 3.82923 3.92747 4.00650 4.21969 4.29353 4.31505 4.37836 4.39388 4.42036 4.46954 4.52499 4.57804 4.64907 4.65769 4.73398 4.74879 4.77466 4.82381 4.84756 4.96627 4.97116 5.09222 5.19968 5.28553 5.30131 5.38209 5.50619 5.67973 5.72152 5.80372 6.10593 6.39716 6.42934 6.52390 6.75790 6.82628 7.36648 8.90244 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003330 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.370042 B = 8406.057600 C = 9233.495337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.167 4.167 5 C -0.063 4.063 6 C -0.137 4.137 7 C 0.104 3.896 8 O -0.391 6.391 9 C 0.072 3.928 10 C 0.044 3.956 11 N -0.539 5.539 12 C 0.045 3.955 13 C 0.184 3.816 14 H -0.003 1.003 15 C -0.126 4.126 16 C -0.499 4.499 17 H 0.031 0.969 18 C 0.013 3.987 19 N -0.949 5.949 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.243 1.243 23 H -0.286 1.286 24 C -0.071 4.071 25 C -0.218 4.218 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.013 0.987 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 -10.591 19.395 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.185 4.185 5 C -0.081 4.081 6 C -0.137 4.137 7 C 0.028 3.972 8 O -0.311 6.311 9 C -0.004 4.004 10 C -0.084 4.084 11 N -0.264 5.264 12 C -0.103 4.103 13 C 0.076 3.924 14 H 0.014 0.986 15 C -0.185 4.185 16 C -0.537 4.537 17 H 0.050 0.950 18 C -0.184 4.184 19 N -0.589 5.589 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.167 1.167 23 H -0.212 1.212 24 C -0.089 4.089 25 C -0.236 4.236 26 H 0.140 0.860 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.435 -11.251 19.196 23.162 hybrid contribution 0.087 1.481 -0.853 1.711 sum 6.522 -9.771 18.343 21.782 Atomic orbital electron populations 1.23326 0.76639 1.05583 1.02065 1.86029 1.23318 1.26768 1.88649 1.19289 0.92927 0.84517 0.96209 1.20663 0.91541 0.99294 1.07045 1.21100 1.00851 0.90540 0.95628 1.19741 0.93762 0.95075 1.05142 1.21322 0.99396 0.92161 0.84305 1.88114 1.80517 1.36414 1.26037 1.22594 0.96938 0.85247 0.95657 1.22305 0.90816 1.00459 0.94780 1.61916 1.19069 1.40296 1.05100 1.22127 0.98882 0.90214 0.99086 1.19557 0.94202 0.93281 0.85358 0.98568 1.21890 0.98543 0.98727 0.99297 1.21065 0.92775 1.34761 1.05124 0.95044 1.25806 0.98479 0.96737 0.97390 1.70054 1.25575 1.44788 1.18505 0.85920 0.81055 0.79604 0.77429 1.19548 1.16679 1.21201 1.21080 0.94427 0.97681 0.95709 1.21427 1.01022 0.92073 1.09093 0.86050 0.91534 0.92512 0.83829 0.83343 0.90724 0.92261 0.90574 0.92892 0.90357 0.93084 0.93650 0.90664 0.96843 0.94284 0.92780 0.93843 0.92600 0.85319 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.46 10.50 -92.45 -0.97 -8.43 16 3 C 0.12 2.83 6.69 22.51 0.15 2.98 16 4 C -0.17 -3.84 9.99 22.37 0.22 -3.62 16 5 C -0.06 -1.43 9.69 22.25 0.22 -1.21 16 6 C -0.14 -3.42 5.51 -19.85 -0.11 -3.53 16 7 C 0.10 2.40 6.06 71.24 0.43 2.83 16 8 O -0.39 -11.97 10.27 -148.98 -1.53 -13.50 16 9 C 0.07 1.89 6.00 71.98 0.43 2.32 16 10 C 0.04 1.43 5.16 86.30 0.45 1.88 16 11 N -0.54 -22.71 4.57 -901.49 -4.12 -26.83 16 12 C 0.05 1.79 9.06 127.69 1.16 2.95 16 13 C 0.18 8.80 1.61 44.17 0.07 8.87 16 14 H 0.00 -0.15 5.71 -2.39 -0.01 -0.16 16 15 C -0.13 -5.57 8.43 71.98 0.61 -4.96 16 16 C -0.50 -29.04 7.57 25.60 0.19 -28.85 16 17 H 0.03 2.09 7.82 -2.91 -0.02 2.06 16 18 C 0.01 0.76 5.47 84.66 0.46 1.22 16 19 N -0.95 -59.97 13.96 21.45 0.30 -59.68 16 20 Si 0.94 44.44 26.37 68.60 1.81 46.25 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.24 -10.66 6.39 99.48 0.64 -10.03 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 C -0.07 -1.81 9.69 22.26 0.22 -1.59 16 25 C -0.22 -5.20 9.04 22.37 0.20 -5.00 16 26 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 28 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 29 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.07 1.32 8.08 -2.38 -0.02 1.30 16 32 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 1.31 6.26 -2.39 -0.01 1.30 16 35 H 0.08 2.57 5.98 -2.39 -0.01 2.55 16 36 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 37 H 0.04 2.11 6.83 -2.39 -0.02 2.09 16 38 H 0.07 2.46 6.21 -2.38 -0.01 2.45 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.04 1.74 7.24 -2.38 -0.02 1.73 16 41 H 0.05 1.99 6.59 -2.38 -0.02 1.98 16 42 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 45 H 0.14 2.79 6.30 -2.91 -0.02 2.77 16 Total: -1.00 -72.37 359.65 2.19 -70.18 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.89 Total: 16.33 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 5.81 Total: -24.33 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -3.82 Total: -86.51 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -2.50 Total: -21.93 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.81 Total: 46.25 kcal Total: -72.37 2.19 -70.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610728945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -72.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds