Wall clock time and date at job start Tue Mar 31 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46503 * 109.45178 * 181.24494 * 12 11 10 14 14 C 1.34780 * 119.99987 * 84.78906 * 13 12 11 15 15 O 1.21586 * 119.99828 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99683 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99844 * 179.97438 * 16 14 13 18 18 C 1.53003 * 115.55264 * 179.90883 * 17 16 14 19 19 C 1.52995 * 117.49393 * 34.33350 * 18 17 16 20 20 C 1.52994 * 117.49784 * 325.67396 * 18 17 16 21 21 C 1.53003 * 117.49542 * 34.20934 * 17 16 14 22 22 C 1.53002 * 117.49922 * 325.58508 * 17 16 14 23 23 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 24 24 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 25 25 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 27 27 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 28 28 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 29 29 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 30 30 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 31 31 H 0.96995 * 119.99932 * 264.79244 * 13 12 11 32 32 H 0.96996 * 120.00271 * 359.97438 * 16 14 13 33 33 H 1.08997 * 115.54946 * 179.97438 * 18 17 16 34 34 H 1.08996 * 117.50132 * 0.02562 * 19 18 17 35 35 H 1.09010 * 117.49612 * 145.02231 * 19 18 17 36 36 H 1.08998 * 117.50251 * 214.97623 * 20 18 17 37 37 H 1.09002 * 117.50327 * 359.97438 * 20 18 17 38 38 H 1.09001 * 117.50443 * 359.97438 * 21 17 16 39 39 H 1.09002 * 117.50035 * 145.02620 * 21 17 16 40 40 H 1.08997 * 117.49831 * 214.97065 * 22 17 16 41 41 H 1.09000 * 117.50005 * 359.97438 * 22 17 16 42 42 H 1.09002 * 109.49555 * 178.74703 * 23 12 11 43 43 H 1.08999 * 109.49562 * 58.65207 * 23 12 11 44 44 H 1.08996 * 109.59017 * 246.20330 * 24 9 7 45 45 H 1.09009 * 109.58200 * 6.48305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0395 -5.6479 2.9302 14 6 -0.0054 -6.2701 3.5113 15 8 -1.1369 -6.0449 3.1275 16 7 0.2040 -7.1408 4.5184 17 6 -0.9318 -7.8166 5.1504 18 6 -0.5779 -8.7849 6.2809 19 6 0.6150 -8.4272 7.1696 20 6 0.7302 -9.5686 6.1562 21 6 -2.1251 -8.1735 4.2617 22 6 -2.2400 -7.0329 5.2751 23 6 2.0674 -4.6174 0.9645 24 6 1.8137 -3.6528 -0.1983 25 1 -0.4850 0.8400 -0.0004 26 1 0.0993 -1.3344 1.6687 27 1 -0.6775 -2.6380 0.7360 28 1 1.3427 -2.9695 3.0019 29 1 -0.3882 -3.3843 3.0516 30 1 -0.0283 -5.0408 1.2304 31 1 1.9422 -5.8272 3.2366 32 1 1.1067 -7.3201 4.8247 33 1 -1.4230 -9.2873 6.7514 34 1 1.1474 -7.5020 6.9492 35 1 0.5549 -8.6952 8.2246 36 1 0.7459 -10.5869 6.5446 37 1 1.3384 -9.3947 5.2685 38 1 -2.0652 -7.9052 3.2069 39 1 -2.6582 -9.0983 4.4824 40 1 -2.8486 -7.2074 6.1623 41 1 -2.2554 -6.0143 4.8873 42 1 2.3041 -5.6063 0.5718 43 1 2.9024 -4.2538 1.5634 44 1 1.0401 -4.0603 -0.8491 45 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610767696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:42 Heat of formation + Delta-G solvation = 48.652613 kcal Electronic energy + Delta-G solvation = -24111.707846 eV Core-core repulsion = 20745.642893 eV Total energy + Delta-G solvation = -3366.064952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57796 -38.55680 -37.20421 -35.36790 -34.18943 -33.05867 -31.67497 -29.94950 -29.22755 -25.09960 -24.13958 -22.88492 -22.32299 -22.15401 -22.10374 -20.83605 -19.71205 -19.23622 -18.35195 -16.82680 -16.12888 -15.74210 -15.37571 -14.93097 -14.77959 -14.25598 -13.98118 -13.76642 -13.58262 -13.45822 -12.97350 -12.70225 -12.39048 -12.22782 -12.12834 -11.85218 -11.46221 -11.24214 -11.08745 -11.02842 -10.87544 -10.70342 -10.38234 -10.32338 -10.23969 -10.22059 -10.03279 -9.78453 -9.72177 -9.49790 -8.72705 -8.48375 -8.32411 -6.66147 -5.76374 -3.19678 2.71633 3.16009 3.39655 3.44774 3.45636 3.46519 4.13564 4.15965 4.25301 4.49693 4.51095 4.66817 4.83456 5.10545 5.21983 5.29137 5.32474 5.37309 5.42714 5.48441 5.64547 5.67721 5.73997 5.74780 5.78181 5.86540 6.10094 6.13311 6.26534 6.39480 6.45056 6.48910 6.61177 6.64748 6.67934 6.79555 6.93251 6.98052 7.12814 7.41863 7.71417 7.81256 8.16449 8.47377 8.79034 9.23140 9.86440 10.43372 11.32103 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.003132 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.743663 B = 8938.496740 C = 9093.916850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.170 3.830 13 N -0.739 5.739 14 C 0.703 3.297 15 O -0.581 6.581 16 N -0.719 5.719 17 C 0.141 3.859 18 C -0.114 4.114 19 C -0.178 4.178 20 C -0.178 4.178 21 C -0.173 4.173 22 C -0.172 4.172 23 C -0.138 4.138 24 C 0.149 3.851 25 H 0.255 0.745 26 H 0.088 0.912 27 H 0.020 0.980 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.389 0.611 32 H 0.394 0.606 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.020 0.980 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -18.729 12.973 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.066 3.934 13 N -0.393 5.393 14 C 0.403 3.597 15 O -0.458 6.458 16 N -0.373 5.373 17 C 0.053 3.947 18 C -0.133 4.133 19 C -0.215 4.215 20 C -0.215 4.215 21 C -0.211 4.211 22 C -0.211 4.211 23 C -0.178 4.178 24 C 0.022 3.978 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.221 0.779 32 H 0.229 0.771 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.600 -18.333 12.561 22.232 hybrid contribution 1.301 0.685 0.382 1.519 sum 1.901 -17.649 12.943 21.969 Atomic orbital electron populations 1.70026 1.05262 1.25667 1.53548 1.25064 0.95275 0.98441 1.00799 0.86370 0.78902 0.83398 0.78078 1.20892 1.21631 1.21058 1.19126 0.92505 0.84829 1.42072 0.91722 1.44095 1.35924 1.01508 1.49992 1.20748 0.88646 0.98045 0.87786 1.22578 1.00384 0.95281 1.00411 1.20906 0.98510 0.88018 0.85968 1.45570 1.07671 1.46889 1.39147 1.15964 0.85394 0.78788 0.79521 1.90888 1.21003 1.67809 1.66136 1.44416 1.08772 1.46564 1.37540 1.19635 0.81895 0.97396 0.95775 1.21747 0.93258 1.00343 0.97957 1.23011 1.01790 0.99747 0.96938 1.23004 1.00096 0.96941 1.01459 1.23432 0.99626 0.98720 0.99328 1.23435 0.97804 0.99379 1.00472 1.22339 0.96779 0.99657 0.99058 1.20834 0.97982 0.86736 0.92279 0.93521 0.89375 0.96141 0.92914 0.92801 0.90076 0.77871 0.77132 0.86222 0.88623 0.88356 0.88381 0.88673 0.86881 0.89333 0.89296 0.86792 0.92696 0.91955 0.96202 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.26 -7.03 9.58 -15.06 -0.14 -7.17 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.92 3.00 -172.31 -0.52 -15.43 16 10 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 11 C -0.15 -2.97 5.66 -26.59 -0.15 -3.12 16 12 C 0.17 2.99 2.41 -67.87 -0.16 2.82 16 13 N -0.74 -10.53 5.08 -58.62 -0.30 -10.83 16 14 C 0.70 10.67 8.23 -86.92 -0.72 9.96 16 15 O -0.58 -10.92 11.48 5.29 0.06 -10.86 16 16 N -0.72 -8.27 5.28 -52.41 -0.28 -8.55 16 17 C 0.14 1.56 3.07 -131.82 -0.40 1.16 16 18 C -0.11 -0.92 5.85 -90.62 -0.53 -1.45 16 19 C -0.18 -1.22 9.84 -26.70 -0.26 -1.49 16 20 C -0.18 -1.19 9.84 -26.70 -0.26 -1.46 16 21 C -0.17 -2.11 9.44 -26.72 -0.25 -2.37 16 22 C -0.17 -2.16 9.44 -26.73 -0.25 -2.41 16 23 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 24 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 26 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 31 H 0.39 4.37 8.62 -40.82 -0.35 4.02 16 32 H 0.39 3.51 6.61 -40.82 -0.27 3.24 16 33 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.69 7.36 -51.93 -0.38 0.31 16 35 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.66 7.37 -51.93 -0.38 0.27 16 38 H 0.11 1.72 6.36 -51.93 -0.33 1.39 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.11 1.80 6.38 -51.93 -0.33 1.47 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.51 352.61 -10.91 -42.42 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.37 Total: 7.75 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.42 Total: -0.64 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.47 Total: -60.71 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.06 Total: -10.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.51 -10.91 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610767696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.069 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds