Wall clock time and date at job start Tue Mar 31 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46503 * 109.45178 * 181.24494 * 12 11 10 14 14 C 1.34780 * 119.99987 * 84.78906 * 13 12 11 15 15 O 1.21586 * 119.99828 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99683 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99844 * 179.97438 * 16 14 13 18 18 C 1.53003 * 115.55264 * 179.90883 * 17 16 14 19 19 C 1.52995 * 117.49393 * 34.33350 * 18 17 16 20 20 C 1.52994 * 117.49784 * 325.67396 * 18 17 16 21 21 C 1.53003 * 117.49542 * 34.20934 * 17 16 14 22 22 C 1.53002 * 117.49922 * 325.58508 * 17 16 14 23 23 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 24 24 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 25 25 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 27 27 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 28 28 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 29 29 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 30 30 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 31 31 H 0.96995 * 119.99932 * 264.79244 * 13 12 11 32 32 H 0.96996 * 120.00271 * 359.97438 * 16 14 13 33 33 H 1.08997 * 115.54946 * 179.97438 * 18 17 16 34 34 H 1.08996 * 117.50132 * 0.02562 * 19 18 17 35 35 H 1.09010 * 117.49612 * 145.02231 * 19 18 17 36 36 H 1.08998 * 117.50251 * 214.97623 * 20 18 17 37 37 H 1.09002 * 117.50327 * 359.97438 * 20 18 17 38 38 H 1.09001 * 117.50443 * 359.97438 * 21 17 16 39 39 H 1.09002 * 117.50035 * 145.02620 * 21 17 16 40 40 H 1.08997 * 117.49831 * 214.97065 * 22 17 16 41 41 H 1.09000 * 117.50005 * 359.97438 * 22 17 16 42 42 H 1.09002 * 109.49555 * 178.74703 * 23 12 11 43 43 H 1.08999 * 109.49562 * 58.65207 * 23 12 11 44 44 H 1.08996 * 109.59017 * 246.20330 * 24 9 7 45 45 H 1.09009 * 109.58200 * 6.48305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0395 -5.6479 2.9302 14 6 -0.0054 -6.2701 3.5113 15 8 -1.1369 -6.0449 3.1275 16 7 0.2040 -7.1408 4.5184 17 6 -0.9318 -7.8166 5.1504 18 6 -0.5779 -8.7849 6.2809 19 6 0.6150 -8.4272 7.1696 20 6 0.7302 -9.5686 6.1562 21 6 -2.1251 -8.1735 4.2617 22 6 -2.2400 -7.0329 5.2751 23 6 2.0674 -4.6174 0.9645 24 6 1.8137 -3.6528 -0.1983 25 1 -0.4850 0.8400 -0.0004 26 1 0.0993 -1.3344 1.6687 27 1 -0.6775 -2.6380 0.7360 28 1 1.3427 -2.9695 3.0019 29 1 -0.3882 -3.3843 3.0516 30 1 -0.0283 -5.0408 1.2304 31 1 1.9422 -5.8272 3.2366 32 1 1.1067 -7.3201 4.8247 33 1 -1.4230 -9.2873 6.7514 34 1 1.1474 -7.5020 6.9492 35 1 0.5549 -8.6952 8.2246 36 1 0.7459 -10.5869 6.5446 37 1 1.3384 -9.3947 5.2685 38 1 -2.0652 -7.9052 3.2069 39 1 -2.6582 -9.0983 4.4824 40 1 -2.8486 -7.2074 6.1623 41 1 -2.2554 -6.0143 4.8873 42 1 2.3041 -5.6063 0.5718 43 1 2.9024 -4.2538 1.5634 44 1 1.0401 -4.0603 -0.8491 45 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610767696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:42 Heat of formation + Delta-G solvation = 28.548373 kcal Electronic energy + Delta-G solvation = -24112.579631 eV Core-core repulsion = 20745.642893 eV Total energy + Delta-G solvation = -3366.936738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69629 -39.75929 -38.56402 -36.39214 -35.59030 -34.45689 -33.30791 -31.68832 -30.92513 -26.95015 -25.07734 -23.94201 -23.76664 -23.56914 -22.88904 -22.10530 -21.15953 -20.39348 -19.57328 -18.71106 -17.33820 -16.79818 -16.49472 -16.37731 -16.19932 -15.70715 -15.36317 -15.23695 -14.85069 -14.73704 -14.50156 -14.39206 -14.04550 -13.20936 -13.13876 -13.01359 -12.89081 -12.67629 -12.56519 -12.36256 -12.25407 -12.09712 -12.04666 -11.85417 -11.69729 -11.51755 -11.38029 -11.08588 -11.06844 -10.89367 -10.57459 -10.01588 -9.43450 -8.71926 -7.87610 -5.34449 1.47319 1.50046 1.56996 1.60143 2.06306 2.51566 2.67269 3.14732 3.29151 3.33665 3.47252 3.66053 3.80375 3.88080 4.02213 4.09069 4.14935 4.33608 4.35455 4.40897 4.46861 4.58869 4.66273 4.78814 4.82985 4.83828 4.84609 5.02104 5.07321 5.07858 5.10983 5.14676 5.19713 5.27510 5.31136 5.40765 5.44752 5.61450 5.63339 5.65213 5.68859 6.00443 6.38135 7.10619 7.13003 7.61589 7.83786 8.36822 9.19358 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.003132 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.743663 B = 8938.496740 C = 9093.916850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.184 3.816 11 C -0.129 4.129 12 C 0.183 3.817 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.620 6.620 16 N -0.703 5.703 17 C 0.152 3.848 18 C -0.125 4.125 19 C -0.173 4.173 20 C -0.169 4.169 21 C -0.179 4.179 22 C -0.185 4.185 23 C -0.120 4.120 24 C 0.142 3.858 25 H 0.249 0.751 26 H 0.054 0.946 27 H -0.012 1.012 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.409 0.591 32 H 0.411 0.589 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.011 0.989 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 -20.909 14.680 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.169 4.169 12 C 0.078 3.922 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.500 6.500 16 N -0.358 5.358 17 C 0.063 3.937 18 C -0.143 4.143 19 C -0.210 4.210 20 C -0.206 4.206 21 C -0.217 4.217 22 C -0.223 4.223 23 C -0.160 4.160 24 C 0.016 3.984 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.006 0.994 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.248 0.752 33 H 0.153 0.847 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.029 0.971 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.176 -20.573 14.299 25.255 hybrid contribution 0.481 1.314 -0.178 1.411 sum 3.657 -19.259 14.121 24.159 Atomic orbital electron populations 1.70208 1.06945 1.25956 1.55378 1.25900 0.96001 1.01871 1.01198 0.85295 0.77472 0.78901 0.78500 1.19788 1.22388 1.20193 1.19547 0.93051 0.85818 1.40969 0.90797 1.44344 1.35674 1.02714 1.50552 1.20442 0.87803 0.97237 0.88781 1.22312 1.00075 0.96094 0.98444 1.20483 0.98353 0.86821 0.86555 1.45146 1.08629 1.45979 1.38304 1.16161 0.84796 0.79207 0.80059 1.90893 1.22764 1.69025 1.67364 1.44260 1.10032 1.45287 1.36179 1.19889 0.81090 0.96825 0.95863 1.21770 0.94645 1.00501 0.97427 1.23092 1.00424 0.99734 0.97766 1.23093 0.98420 0.97732 1.01312 1.23357 1.01388 0.99535 0.97423 1.23348 1.00116 0.97466 1.01396 1.22129 0.96182 1.00351 0.97301 1.21043 0.97897 0.85577 0.93914 0.94177 0.92799 0.99431 0.92248 0.93907 0.92709 0.75502 0.75204 0.84683 0.89050 0.86873 0.86748 0.88802 0.90336 0.86792 0.86977 0.90683 0.89084 0.90620 0.97124 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 11.20 21.65 0.24 -57.23 16 2 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 3 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.26 -14.56 9.58 84.03 0.81 -13.76 16 8 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 9 N -0.61 -31.11 3.00 -699.07 -2.09 -33.20 16 10 C 0.18 9.50 5.30 86.37 0.46 9.96 16 11 C -0.13 -5.33 5.66 30.69 0.17 -5.16 16 12 C 0.18 6.35 2.41 45.03 0.11 6.46 16 13 N -0.73 -19.49 5.08 -457.62 -2.33 -21.82 16 14 C 0.70 20.84 8.23 179.06 1.47 22.32 16 15 O -0.62 -24.19 11.48 -3.99 -0.05 -24.24 16 16 N -0.70 -15.07 5.28 -438.00 -2.31 -17.38 16 17 C 0.15 3.13 3.07 3.61 0.01 3.14 16 18 C -0.12 -1.63 5.85 -10.80 -0.06 -1.69 16 19 C -0.17 -1.78 9.84 30.62 0.30 -1.48 16 20 C -0.17 -1.64 9.84 30.62 0.30 -1.34 16 21 C -0.18 -4.33 9.44 30.60 0.29 -4.04 16 22 C -0.18 -4.63 9.44 30.60 0.29 -4.34 16 23 C -0.12 -3.73 5.55 30.67 0.17 -3.56 16 24 C 0.14 5.76 6.52 86.36 0.56 6.32 16 25 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 31 H 0.41 7.87 8.62 -92.71 -0.80 7.07 16 32 H 0.41 6.17 6.61 -92.71 -0.61 5.55 16 33 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.03 7.36 -2.39 -0.02 1.02 16 35 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.95 7.37 -2.39 -0.02 0.94 16 38 H 0.08 2.49 6.36 -2.39 -0.02 2.48 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 41 H 0.07 2.51 6.38 -2.39 -0.02 2.49 16 42 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 2.63 7.93 -2.38 -0.02 2.62 16 Total: -1.00 -72.32 352.61 0.38 -71.94 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.42 Total: 24.48 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.30 Total: 10.16 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -6.49 Total: -129.63 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.32 0.38 -71.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610767696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.488 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds