Wall clock time and date at job start Tue Mar 31 2020 07:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00323 * 2 1 4 4 C 1.50700 * 109.47128 * 89.99929 * 3 2 1 5 5 H 1.07999 * 119.99988 * 0.02562 * 4 3 2 6 6 C 1.37885 * 120.00047 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 359.72512 * 6 4 3 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.34780 * 120.00151 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00031 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99530 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47032 * 180.02562 * 14 12 2 16 16 N 1.46893 * 109.47311 * 180.02562 * 15 14 12 17 17 C 1.46853 * 110.99833 * 294.21247 * 16 15 14 18 18 C 1.53037 * 109.52369 * 174.16369 * 17 16 15 19 19 C 1.53117 * 109.28291 * 59.17653 * 18 17 16 20 20 C 1.53120 * 109.15807 * 302.34765 * 19 18 17 21 21 C 1.53001 * 109.50555 * 177.59549 * 20 19 18 22 22 C 1.47195 * 109.53653 * 297.69248 * 20 19 18 23 23 N 7.63012 * 79.76079 * 198.66522 * 2 1 3 24 24 C 1.46848 * 111.00306 * 170.00256 * 16 15 14 25 25 H 1.09003 * 109.47071 * 89.99571 * 1 2 3 26 26 H 1.08996 * 109.47090 * 210.00101 * 1 2 3 27 27 H 1.08996 * 109.46935 * 329.99886 * 1 2 3 28 28 H 1.09004 * 109.47268 * 330.00069 * 3 2 1 29 29 H 1.08997 * 109.47471 * 210.00476 * 3 2 1 30 30 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47417 * 300.00368 * 14 12 2 32 32 H 1.09007 * 109.47053 * 60.00759 * 14 12 2 33 33 H 1.08999 * 109.47098 * 300.00291 * 15 14 12 34 34 H 1.08999 * 109.46908 * 59.99970 * 15 14 12 35 35 H 1.09002 * 109.46183 * 294.17556 * 17 16 15 36 36 H 1.08995 * 109.46483 * 54.14084 * 17 16 15 37 37 H 1.08999 * 109.50391 * 299.23164 * 18 17 16 38 38 H 1.08999 * 109.49979 * 179.12085 * 18 17 16 39 39 H 1.09000 * 109.52351 * 182.44067 * 19 18 17 40 40 H 1.08998 * 109.57453 * 62.27699 * 19 18 17 41 41 H 1.09000 * 109.46748 * 300.19460 * 21 20 19 42 42 H 1.09002 * 109.47100 * 60.19153 * 21 20 19 43 43 H 1.08997 * 109.47284 * 180.19742 * 21 20 19 44 44 H 1.08997 * 109.45501 * 305.85244 * 24 16 15 45 45 H 1.08997 * 109.46036 * 65.83039 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1261 2.8779 1.6728 7 7 3.3458 3.2573 2.9127 8 14 3.7392 3.9256 0.2529 9 1 2.6896 4.9039 -0.1297 10 1 4.9658 4.6526 0.6679 11 1 4.0496 3.0532 -0.9080 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 0.8946 -5.0824 1.2490 18 6 0.0304 -6.3418 1.1547 19 6 0.9303 -7.5549 0.9037 20 6 1.7364 -7.3261 -0.3779 21 6 2.6823 -8.5072 -0.6041 22 6 0.8182 -7.2059 -1.5220 23 7 0.1087 -7.1137 -2.4030 24 6 2.5512 -6.0382 -0.2392 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6085 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5139 30 1 3.8220 4.0836 3.0900 31 1 0.7590 -2.5302 0.8896 32 1 0.7584 -2.5298 -0.8904 33 1 3.0063 -3.5775 -0.8905 34 1 3.0062 -3.5775 0.8895 35 1 1.5923 -5.1821 2.0805 36 1 0.2556 -4.2148 1.4134 37 1 -0.6770 -6.2370 0.3320 38 1 -0.5146 -6.4799 2.0885 39 1 0.3153 -8.4480 0.7927 40 1 1.6119 -7.6842 1.7445 41 1 3.3611 -8.5966 0.2440 42 1 2.1015 -9.4242 -0.7028 43 1 3.2584 -8.3421 -1.5146 44 1 3.1153 -5.8648 -1.1556 45 1 3.2410 -6.1335 0.5994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612163366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:24 Heat of formation + Delta-G solvation = -10.629550 kcal Electronic energy + Delta-G solvation = -23714.693530 eV Core-core repulsion = 20346.057910 eV Total energy + Delta-G solvation = -3368.635620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18467 -39.02189 -36.54648 -35.02214 -34.61927 -32.59870 -32.44723 -30.72459 -28.36325 -27.05315 -26.00008 -25.01514 -23.36724 -22.82692 -21.68673 -20.66951 -18.39363 -16.98612 -16.96572 -16.73429 -15.59542 -15.56071 -15.28999 -15.09837 -14.72055 -14.65852 -14.10145 -13.92099 -13.68127 -13.34798 -13.06500 -12.79449 -12.62340 -12.52307 -12.41604 -12.27898 -12.19013 -12.02541 -11.92024 -11.85574 -11.69603 -11.40142 -11.24196 -11.05065 -10.88335 -10.64221 -10.57643 -10.46082 -10.10011 -9.54934 -9.00584 -8.59724 -8.49425 -7.69522 -6.09362 -4.07959 2.70231 2.74536 3.26941 3.34682 3.36113 3.40061 3.46048 3.68900 4.04097 4.27073 4.39647 4.39745 4.53587 4.72047 4.93835 5.05896 5.09982 5.14576 5.17586 5.21971 5.25936 5.32179 5.35412 5.40909 5.43810 5.55780 5.58616 5.62623 5.68742 5.74242 5.85570 5.88891 5.94286 6.04415 6.08068 6.17815 6.66890 6.86922 6.90178 6.98780 7.34236 7.52135 7.61072 8.25644 8.46712 8.92168 8.99041 9.51200 11.04069 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.002983 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.801566 B = 9382.792106 C = 9403.523126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.508 3.492 13 O -0.544 6.544 14 C -0.135 4.135 15 C 0.074 3.926 16 N -0.544 5.544 17 C 0.047 3.953 18 C -0.122 4.122 19 C -0.109 4.109 20 C 0.039 3.961 21 C -0.142 4.142 22 C 0.232 3.768 23 N -0.439 5.439 24 C 0.066 3.934 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -22.702 -3.872 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.294 3.706 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.053 4.053 16 N -0.268 5.268 17 C -0.080 4.080 18 C -0.160 4.160 19 C -0.148 4.148 20 C 0.035 3.965 21 C -0.200 4.200 22 C -0.087 4.087 23 N -0.113 5.113 24 C -0.063 4.063 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.163 -22.368 -5.494 23.843 hybrid contribution 0.998 0.788 0.464 1.353 sum -5.165 -21.580 -5.030 22.753 Atomic orbital electron populations 1.21664 0.80941 1.02949 1.00493 1.47837 1.06286 1.07185 1.71750 1.19661 0.92537 0.80085 0.98319 1.21332 1.36954 1.07094 0.91276 0.90834 1.24867 0.95230 0.97377 0.95597 1.69898 1.41617 1.23501 1.18675 0.86852 0.78922 0.80746 0.83267 1.20100 1.20934 1.18814 1.20313 0.88033 0.85138 0.77105 1.90661 1.13992 1.87364 1.50234 1.21639 0.99299 0.92431 1.04131 1.21779 0.94508 0.86352 1.02674 1.61886 1.27552 1.02037 1.35373 1.22214 0.96990 0.98613 0.90223 1.21658 0.98057 0.93719 1.02529 1.21719 0.98745 0.99052 0.95274 1.18391 0.92189 0.97296 0.88659 1.21859 0.98762 0.95986 1.03437 1.28593 0.93726 0.92556 0.93799 1.81129 1.10003 1.08843 1.11339 1.22134 0.93323 0.88353 1.02481 0.93631 0.92116 0.90638 0.95721 0.94111 0.92567 0.89366 0.88869 0.89891 0.93349 0.94092 0.89991 0.91237 0.90662 0.90848 0.89853 0.90353 0.91413 0.91417 0.89697 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.38 2.86 -182.96 -0.52 -12.91 16 3 C 0.21 5.30 4.23 -5.20 -0.02 5.28 16 4 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 8 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.51 10.20 7.67 -10.98 -0.08 10.11 16 13 O -0.54 -13.18 15.56 5.56 0.09 -13.10 16 14 C -0.13 -1.92 4.18 -27.88 -0.12 -2.03 16 15 C 0.07 0.98 4.25 -3.82 -0.02 0.96 16 16 N -0.54 -5.73 4.25 -234.67 -1.00 -6.73 16 17 C 0.05 0.43 5.29 -3.83 -0.02 0.41 16 18 C -0.12 -0.90 5.83 -26.65 -0.16 -1.06 16 19 C -0.11 -0.64 4.77 -26.61 -0.13 -0.77 16 20 C 0.04 0.27 0.72 -157.22 -0.11 0.16 16 21 C -0.14 -0.66 8.44 37.16 0.31 -0.35 16 22 C 0.23 2.44 12.34 -20.80 -0.26 2.18 16 23 N -0.44 -5.92 18.53 42.11 0.78 -5.14 16 24 C 0.07 0.55 4.15 -3.83 -0.02 0.54 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 29 H 0.04 1.09 6.47 -51.93 -0.34 0.75 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 31 H 0.09 1.13 5.69 -51.93 -0.30 0.84 16 32 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 33 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 34 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.78 6.21 -51.93 -0.32 0.46 16 37 H 0.07 0.64 7.36 -51.93 -0.38 0.26 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.72 8.01 -51.93 -0.42 0.31 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -35.69 360.45 -7.10 -42.79 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -7.54 Total: -4.07 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.44 Total: 3.74 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.03 Total: -51.77 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.69 -7.10 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612163366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.158 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds