Wall clock time and date at job start Tue Mar 31 2020 07:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00323 * 2 1 4 4 C 1.50700 * 109.47128 * 89.99929 * 3 2 1 5 5 H 1.07999 * 119.99988 * 0.02562 * 4 3 2 6 6 C 1.37885 * 120.00047 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 359.72512 * 6 4 3 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.34780 * 120.00151 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00031 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99530 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47032 * 180.02562 * 14 12 2 16 16 N 1.46893 * 109.47311 * 180.02562 * 15 14 12 17 17 C 1.46853 * 110.99833 * 294.21247 * 16 15 14 18 18 C 1.53037 * 109.52369 * 174.16369 * 17 16 15 19 19 C 1.53117 * 109.28291 * 59.17653 * 18 17 16 20 20 C 1.53120 * 109.15807 * 302.34765 * 19 18 17 21 21 C 1.53001 * 109.50555 * 177.59549 * 20 19 18 22 22 C 1.47195 * 109.53653 * 297.69248 * 20 19 18 23 23 N 7.63012 * 79.76079 * 198.66522 * 2 1 3 24 24 C 1.46848 * 111.00306 * 170.00256 * 16 15 14 25 25 H 1.09003 * 109.47071 * 89.99571 * 1 2 3 26 26 H 1.08996 * 109.47090 * 210.00101 * 1 2 3 27 27 H 1.08996 * 109.46935 * 329.99886 * 1 2 3 28 28 H 1.09004 * 109.47268 * 330.00069 * 3 2 1 29 29 H 1.08997 * 109.47471 * 210.00476 * 3 2 1 30 30 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47417 * 300.00368 * 14 12 2 32 32 H 1.09007 * 109.47053 * 60.00759 * 14 12 2 33 33 H 1.08999 * 109.47098 * 300.00291 * 15 14 12 34 34 H 1.08999 * 109.46908 * 59.99970 * 15 14 12 35 35 H 1.09002 * 109.46183 * 294.17556 * 17 16 15 36 36 H 1.08995 * 109.46483 * 54.14084 * 17 16 15 37 37 H 1.08999 * 109.50391 * 299.23164 * 18 17 16 38 38 H 1.08999 * 109.49979 * 179.12085 * 18 17 16 39 39 H 1.09000 * 109.52351 * 182.44067 * 19 18 17 40 40 H 1.08998 * 109.57453 * 62.27699 * 19 18 17 41 41 H 1.09000 * 109.46748 * 300.19460 * 21 20 19 42 42 H 1.09002 * 109.47100 * 60.19153 * 21 20 19 43 43 H 1.08997 * 109.47284 * 180.19742 * 21 20 19 44 44 H 1.08997 * 109.45501 * 305.85244 * 24 16 15 45 45 H 1.08997 * 109.46036 * 65.83039 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1261 2.8779 1.6728 7 7 3.3458 3.2573 2.9127 8 14 3.7392 3.9256 0.2529 9 1 2.6896 4.9039 -0.1297 10 1 4.9658 4.6526 0.6679 11 1 4.0496 3.0532 -0.9080 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 0.8946 -5.0824 1.2490 18 6 0.0304 -6.3418 1.1547 19 6 0.9303 -7.5549 0.9037 20 6 1.7364 -7.3261 -0.3779 21 6 2.6823 -8.5072 -0.6041 22 6 0.8182 -7.2059 -1.5220 23 7 0.1087 -7.1137 -2.4030 24 6 2.5512 -6.0382 -0.2392 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6085 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5139 30 1 3.8220 4.0836 3.0900 31 1 0.7590 -2.5302 0.8896 32 1 0.7584 -2.5298 -0.8904 33 1 3.0063 -3.5775 -0.8905 34 1 3.0062 -3.5775 0.8895 35 1 1.5923 -5.1821 2.0805 36 1 0.2556 -4.2148 1.4134 37 1 -0.6770 -6.2370 0.3320 38 1 -0.5146 -6.4799 2.0885 39 1 0.3153 -8.4480 0.7927 40 1 1.6119 -7.6842 1.7445 41 1 3.3611 -8.5966 0.2440 42 1 2.1015 -9.4242 -0.7028 43 1 3.2584 -8.3421 -1.5146 44 1 3.1153 -5.8648 -1.1556 45 1 3.2410 -6.1335 0.5994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612163366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:23 Heat of formation + Delta-G solvation = -35.598244 kcal Electronic energy + Delta-G solvation = -23715.776254 eV Core-core repulsion = 20346.057910 eV Total energy + Delta-G solvation = -3369.718344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05468 -40.42262 -37.46173 -36.64986 -35.53557 -34.70222 -33.11416 -31.96146 -30.12113 -27.58673 -27.37598 -26.15549 -24.29539 -24.00547 -22.81006 -21.53992 -19.91926 -19.15804 -18.10890 -17.62635 -17.10213 -16.85736 -16.38286 -16.06446 -15.74083 -15.68544 -15.35946 -14.82672 -14.62289 -14.58482 -14.27724 -14.10875 -13.76453 -13.68669 -13.48323 -13.43186 -13.30582 -13.15837 -12.88818 -12.84687 -12.75982 -12.52814 -12.41866 -12.29960 -12.07568 -12.00541 -11.76778 -11.72941 -11.25404 -11.23083 -10.83080 -10.66766 -9.40692 -9.31405 -8.35191 -6.40174 1.31379 1.35819 1.46775 1.79397 1.90632 1.95292 2.25904 2.30678 2.84740 2.98974 3.05965 3.70416 3.76283 3.85158 3.94368 4.02928 4.12393 4.21546 4.37178 4.39755 4.53737 4.63288 4.64510 4.66640 4.69381 4.79646 4.81055 4.89231 4.91802 4.95586 4.96924 4.99938 5.02410 5.03689 5.11752 5.26124 5.36302 5.39605 5.44964 5.60704 6.00129 6.13471 6.22705 6.60722 6.68988 6.73399 7.20538 7.41024 8.81777 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.002983 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.801566 B = 9382.792106 C = 9403.523126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.029 0.971 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.948 3.052 9 H -0.251 1.251 10 H -0.281 1.281 11 H -0.257 1.257 12 C 0.497 3.503 13 O -0.595 6.595 14 C -0.118 4.118 15 C 0.084 3.916 16 N -0.550 5.550 17 C 0.043 3.957 18 C -0.118 4.118 19 C -0.107 4.107 20 C 0.042 3.958 21 C -0.139 4.139 22 C 0.252 3.748 23 N -0.497 5.497 24 C 0.061 3.939 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.019 0.981 30 H 0.269 0.731 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 -24.064 -4.506 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.100 3.900 4 C -0.575 4.575 5 H 0.048 0.952 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.176 1.176 10 H -0.206 1.206 11 H -0.181 1.181 12 C 0.286 3.714 13 O -0.477 6.477 14 C -0.157 4.157 15 C -0.045 4.045 16 N -0.275 5.275 17 C -0.084 4.084 18 C -0.156 4.156 19 C -0.145 4.145 20 C 0.039 3.961 21 C -0.197 4.197 22 C -0.065 4.065 23 N -0.173 5.173 24 C -0.067 4.067 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.926 -23.758 -6.132 25.496 hybrid contribution 1.197 1.153 0.758 1.826 sum -5.730 -22.605 -5.374 23.931 Atomic orbital electron populations 1.21955 0.77663 1.04003 1.02810 1.47985 1.08444 1.06080 1.71539 1.19329 0.92714 0.82624 0.95375 1.21554 1.36862 1.06732 0.92333 0.95247 1.25854 0.95273 0.98947 0.98622 1.70047 1.42796 1.24437 1.21224 0.85704 0.78842 0.78983 0.79394 1.17551 1.20639 1.18112 1.21340 0.87818 0.86663 0.75570 1.90626 1.16452 1.88219 1.52406 1.21568 0.99070 0.89286 1.05820 1.21566 0.94056 0.87575 1.01258 1.61891 1.27689 1.01489 1.36384 1.22305 0.97050 0.99395 0.89663 1.21636 0.97729 0.93551 1.02656 1.21784 0.98941 0.98691 0.95109 1.18640 0.91985 0.97539 0.87984 1.21894 0.98570 0.94950 1.04335 1.29318 0.92888 0.90814 0.93509 1.81139 1.12047 1.10792 1.13301 1.22254 0.93490 0.88050 1.02942 0.90534 0.89240 0.91529 0.93513 0.96248 0.92223 0.87453 0.86911 0.91240 0.95059 0.93505 0.90589 0.93255 0.88895 0.89577 0.87488 0.88104 0.90554 0.91744 0.90260 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -24.97 2.86 -851.14 -2.43 -27.40 16 3 C 0.22 10.99 4.23 85.63 0.36 11.36 16 4 C -0.54 -31.82 9.94 25.60 0.25 -31.57 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.66 5.47 84.66 0.46 1.12 16 7 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 8 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 9 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.26 -11.77 6.54 99.48 0.65 -11.12 16 12 C 0.50 20.04 7.67 87.66 0.67 20.71 16 13 O -0.60 -29.72 15.56 -3.03 -0.05 -29.77 16 14 C -0.12 -3.22 4.18 29.85 0.12 -3.09 16 15 C 0.08 2.17 4.25 86.31 0.37 2.54 16 16 N -0.55 -10.82 4.25 -896.37 -3.81 -14.63 16 17 C 0.04 0.70 5.29 86.32 0.46 1.16 16 18 C -0.12 -1.46 5.83 30.65 0.18 -1.28 16 19 C -0.11 -0.91 4.77 30.67 0.15 -0.76 16 20 C 0.04 0.50 0.72 -53.94 -0.04 0.46 16 21 C -0.14 -0.89 8.44 71.98 0.61 -0.28 16 22 C 0.25 5.01 12.34 89.45 1.10 6.12 16 23 N -0.50 -13.29 18.53 19.99 0.37 -12.92 16 24 C 0.06 0.91 4.15 86.33 0.36 1.27 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 2.05 6.44 -2.39 -0.02 2.03 16 27 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 28 H 0.05 2.10 7.51 -2.38 -0.02 2.09 16 29 H 0.02 1.04 6.47 -2.39 -0.02 1.03 16 30 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.11 2.55 5.69 -2.39 -0.01 2.54 16 32 H 0.11 2.69 8.11 -2.38 -0.02 2.68 16 33 H 0.07 1.97 7.94 -2.39 -0.02 1.95 16 34 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.30 6.21 -2.39 -0.01 1.29 16 37 H 0.05 0.83 7.36 -2.39 -0.02 0.81 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -81.79 360.45 3.53 -78.25 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.90 Total: 8.10 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.37 Total: 11.30 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -5.57 Total: -114.51 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -81.79 3.53 -78.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612163366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.654 kcal (2) G-P(sol) polarization free energy of solvation -81.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds