Wall clock time and date at job start Tue Mar 31 2020 07:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29458 * 118.17540 * 2 1 4 4 C 1.49965 * 124.60945 * 180.81780 * 3 2 1 5 5 C 1.53104 * 110.25499 * 341.11621 * 4 3 2 6 6 N 1.46920 * 108.10204 * 45.49515 * 5 4 3 7 7 C 1.34781 * 121.45154 * 118.14317 * 6 5 4 8 8 O 1.21590 * 119.99794 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99985 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00024 * 180.02562 * 9 7 6 11 11 C 1.53042 * 109.45910 * 275.06442 * 10 9 7 12 12 C 1.53187 * 109.31356 * 178.61473 * 11 10 9 13 13 N 1.46931 * 108.77548 * 54.63528 * 12 11 10 14 14 C 1.36932 * 120.62734 * 126.41097 * 13 12 11 15 15 H 1.08000 * 120.00184 * 207.65444 * 14 13 12 16 16 C 1.38818 * 120.00437 * 27.66062 * 14 13 12 17 17 N 1.31620 * 119.99525 * 17.37596 * 16 14 13 18 18 Si 1.86801 * 120.00266 * 197.37358 * 16 14 13 19 19 H 1.48498 * 109.46846 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46964 * 120.00035 * 18 16 14 21 21 H 1.48490 * 109.46954 * 239.99998 * 18 16 14 22 22 C 1.46923 * 118.73877 * 306.39346 * 13 12 11 23 23 C 1.53038 * 109.45985 * 154.99924 * 10 9 7 24 24 C 1.47001 * 117.17438 * 298.14767 * 6 5 4 25 25 H 1.09003 * 109.47071 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47343 * 119.99351 * 1 2 3 27 27 H 1.08996 * 109.46941 * 239.99837 * 1 2 3 28 28 H 1.07999 * 117.69201 * 0.83235 * 3 2 1 29 29 H 1.09004 * 109.31621 * 101.31381 * 4 3 2 30 30 H 1.09004 * 109.31174 * 220.92787 * 4 3 2 31 31 H 1.09003 * 109.77947 * 164.96319 * 5 4 3 32 32 H 1.08996 * 109.78171 * 285.77460 * 5 4 3 33 33 H 0.97004 * 120.00306 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46023 * 35.02324 * 10 9 7 35 35 H 1.09009 * 109.49848 * 298.56917 * 11 10 9 36 36 H 1.09000 * 109.49745 * 58.66043 * 11 10 9 37 37 H 1.08995 * 109.58373 * 294.84871 * 12 11 10 38 38 H 1.09002 * 109.58772 * 174.42203 * 12 11 10 39 39 H 0.97004 * 119.99769 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.58494 * 293.81834 * 22 13 12 41 41 H 1.08995 * 109.70338 * 173.46421 * 22 13 12 42 42 H 1.09007 * 109.49649 * 301.33463 * 23 10 9 43 43 H 1.09005 * 109.50063 * 61.39753 * 23 10 9 44 44 H 1.08998 * 109.52040 * 283.02857 * 24 6 5 45 45 H 1.08997 * 109.52542 * 162.84371 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3093 -0.0176 5 6 4.2931 0.0151 0.4300 6 7 3.6463 -1.1070 -0.2636 7 6 4.3337 -1.9031 -1.1064 8 8 5.5158 -1.7001 -1.3062 9 7 3.7109 -2.9241 -1.7276 10 6 4.4582 -3.7898 -2.6432 11 6 4.4900 -3.1534 -4.0347 12 6 5.3013 -4.0441 -4.9808 13 7 4.7394 -5.4013 -4.9506 14 6 4.3714 -6.0299 -6.1102 15 1 3.5905 -6.7759 -6.0958 16 6 5.0022 -5.7086 -7.3043 17 7 6.1565 -5.0763 -7.2894 18 14 4.2129 -6.1736 -8.9323 19 1 2.9272 -6.8717 -8.6774 20 1 3.9596 -4.9457 -9.7281 21 1 5.1240 -7.0723 -9.6852 22 6 4.5801 -6.0714 -3.6528 23 6 3.7768 -5.1579 -2.7216 24 6 2.2167 -1.3252 0.0004 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 -0.3633 -0.5138 0.8899 28 1 1.5123 2.0351 0.0139 29 1 3.9313 1.5570 -1.0288 30 1 3.8879 2.1175 0.6583 31 1 5.3502 0.0468 0.1661 32 1 4.1847 -0.1059 1.5078 33 1 2.7679 -3.0863 -1.5679 34 1 5.4774 -3.9121 -2.2767 35 1 3.4723 -3.0535 -4.4124 36 1 4.9542 -2.1691 -3.9741 37 1 6.3410 -4.0717 -4.6547 38 1 5.2445 -3.6475 -5.9945 39 1 6.5974 -4.8520 -8.1238 40 1 5.5610 -6.2644 -3.2185 41 1 4.0487 -7.0133 -3.7883 42 1 3.7336 -5.6004 -1.7263 43 1 2.7657 -5.0390 -3.1111 44 1 2.0946 -1.8035 0.9722 45 1 1.7962 -1.9639 -0.7763 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619558881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:59 Heat of formation + Delta-G solvation = 9.606441 kcal Electronic energy + Delta-G solvation = -24226.587135 eV Core-core repulsion = 20858.829014 eV Total energy + Delta-G solvation = -3367.758121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43658 -38.31203 -37.09053 -34.45690 -33.81924 -32.56757 -31.57043 -29.94631 -29.29413 -27.29872 -25.97500 -24.79994 -23.17397 -22.18778 -21.69877 -20.10950 -19.41412 -18.20462 -17.72921 -16.73742 -16.25546 -15.37954 -15.09545 -14.76446 -14.61592 -14.31380 -14.12847 -13.93832 -13.68186 -13.46555 -12.99617 -12.97531 -12.71534 -12.53368 -12.39824 -12.25018 -12.08436 -11.64191 -11.44341 -11.09044 -10.91990 -10.87240 -10.71606 -10.33964 -10.18696 -10.04744 -9.92610 -9.72159 -9.51074 -9.08428 -8.84973 -8.52691 -8.33297 -6.65945 -5.75674 -3.18167 1.90210 2.68337 3.38462 3.39056 3.46689 3.48830 3.99938 4.38481 4.51815 4.54531 4.86765 4.98377 5.04667 5.13762 5.26478 5.31209 5.34708 5.36962 5.43412 5.49588 5.51813 5.67191 5.69376 5.77805 5.81053 5.88288 6.13135 6.21001 6.27754 6.32710 6.43937 6.50386 6.64886 6.66032 6.69076 6.82479 6.94744 6.99459 7.13247 7.43385 7.72583 7.82631 8.10628 8.47745 8.78552 9.23821 9.87427 10.44147 11.32805 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.003383 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.221137 B = 8274.685270 C = 8462.022152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.149 4.149 3 C -0.142 4.142 4 C -0.108 4.108 5 C 0.129 3.871 6 N -0.635 5.635 7 C 0.710 3.290 8 O -0.586 6.586 9 N -0.739 5.739 10 C 0.167 3.833 11 C -0.146 4.146 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.254 4.254 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.149 3.851 23 C -0.138 4.138 24 C 0.151 3.849 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.389 0.611 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 10.492 17.448 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 C -0.161 4.161 4 C -0.146 4.146 5 C 0.005 3.995 6 N -0.374 5.374 7 C 0.411 3.589 8 O -0.464 6.464 9 N -0.394 5.394 10 C 0.064 3.936 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.316 5.316 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.022 3.978 23 C -0.178 4.178 24 C 0.028 3.972 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.223 0.777 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.715 10.632 17.120 22.372 hybrid contribution -1.002 -0.104 -0.789 1.279 sum -10.717 10.528 16.331 22.190 Atomic orbital electron populations 1.20880 0.91562 1.02611 1.02303 1.21120 0.96134 0.94901 1.02785 1.21857 0.96219 0.97089 1.00891 1.20823 0.92886 0.98161 1.02716 1.21405 0.98637 0.83912 0.95508 1.47227 1.09437 1.32683 1.48036 1.15816 0.84875 0.79759 0.78439 1.90919 1.14066 1.73698 1.67696 1.45666 1.13264 1.31967 1.48482 1.20922 0.95607 0.88352 0.88748 1.22572 1.01406 0.99508 0.95173 1.20762 0.92821 0.83215 0.98442 1.44120 1.74086 1.12354 1.01015 1.19217 1.13464 1.20428 0.85223 0.91604 1.25051 0.95286 1.00811 0.98515 1.70055 1.14090 1.44573 1.25751 0.86241 0.78812 0.77698 0.84129 1.20277 1.21594 1.21735 1.20827 0.96269 0.93907 0.86804 1.22343 1.00520 0.95281 0.99682 1.20282 0.80482 0.94998 1.01481 0.91876 0.91417 0.91574 0.87751 0.90256 0.90021 0.88481 0.91567 0.77655 0.90056 0.92884 0.92860 0.96120 0.89291 0.93653 0.96173 0.92358 0.92680 0.91976 0.90674 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.00 36.00 0.36 -0.40 16 2 C -0.15 -1.28 5.92 -100.82 -0.60 -1.88 16 3 C -0.14 -1.25 9.41 -35.95 -0.34 -1.59 16 4 C -0.11 -0.99 6.29 -28.18 -0.18 -1.16 16 5 C 0.13 1.40 6.48 -3.76 -0.02 1.37 16 6 N -0.64 -7.97 2.96 -180.21 -0.53 -8.51 16 7 C 0.71 11.63 8.30 -86.92 -0.72 10.91 16 8 O -0.59 -12.05 15.49 5.29 0.08 -11.97 16 9 N -0.74 -11.21 4.98 -58.63 -0.29 -11.51 16 10 C 0.17 3.04 2.42 -67.89 -0.16 2.88 16 11 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16 12 C 0.17 4.33 5.31 -3.71 -0.02 4.31 16 13 N -0.59 -15.02 2.99 -172.32 -0.52 -15.53 16 14 C -0.25 -6.99 9.59 -15.06 -0.14 -7.14 16 15 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 17 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 18 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.15 3.11 6.51 -3.71 -0.02 3.09 16 23 C -0.14 -2.35 5.55 -26.61 -0.15 -2.49 16 24 C 0.15 1.41 6.23 -5.10 -0.03 1.38 16 25 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.78 7.56 -52.49 -0.40 0.38 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.22 7.05 -51.93 -0.37 0.85 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.39 4.76 6.24 -40.82 -0.25 4.51 16 34 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 35 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.74 5.94 -51.93 -0.31 0.43 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.74 350.88 -10.11 -42.85 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.46 Total: 2.51 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.27 Total: 6.07 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.72 Total: -61.51 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.74 -10.11 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619558881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.453 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds