Wall clock time and date at job start Tue Mar 31 2020 07:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29458 * 118.17540 * 2 1 4 4 C 1.49965 * 124.60945 * 180.81780 * 3 2 1 5 5 C 1.53104 * 110.25499 * 341.11621 * 4 3 2 6 6 N 1.46920 * 108.10204 * 45.49515 * 5 4 3 7 7 C 1.34781 * 121.45154 * 118.14317 * 6 5 4 8 8 O 1.21590 * 119.99794 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99985 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00024 * 180.02562 * 9 7 6 11 11 C 1.53042 * 109.45910 * 275.06442 * 10 9 7 12 12 C 1.53187 * 109.31356 * 178.61473 * 11 10 9 13 13 N 1.46931 * 108.77548 * 54.63528 * 12 11 10 14 14 C 1.36932 * 120.62734 * 126.41097 * 13 12 11 15 15 H 1.08000 * 120.00184 * 207.65444 * 14 13 12 16 16 C 1.38818 * 120.00437 * 27.66062 * 14 13 12 17 17 N 1.31620 * 119.99525 * 17.37596 * 16 14 13 18 18 Si 1.86801 * 120.00266 * 197.37358 * 16 14 13 19 19 H 1.48498 * 109.46846 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46964 * 120.00035 * 18 16 14 21 21 H 1.48490 * 109.46954 * 239.99998 * 18 16 14 22 22 C 1.46923 * 118.73877 * 306.39346 * 13 12 11 23 23 C 1.53038 * 109.45985 * 154.99924 * 10 9 7 24 24 C 1.47001 * 117.17438 * 298.14767 * 6 5 4 25 25 H 1.09003 * 109.47071 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47343 * 119.99351 * 1 2 3 27 27 H 1.08996 * 109.46941 * 239.99837 * 1 2 3 28 28 H 1.07999 * 117.69201 * 0.83235 * 3 2 1 29 29 H 1.09004 * 109.31621 * 101.31381 * 4 3 2 30 30 H 1.09004 * 109.31174 * 220.92787 * 4 3 2 31 31 H 1.09003 * 109.77947 * 164.96319 * 5 4 3 32 32 H 1.08996 * 109.78171 * 285.77460 * 5 4 3 33 33 H 0.97004 * 120.00306 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46023 * 35.02324 * 10 9 7 35 35 H 1.09009 * 109.49848 * 298.56917 * 11 10 9 36 36 H 1.09000 * 109.49745 * 58.66043 * 11 10 9 37 37 H 1.08995 * 109.58373 * 294.84871 * 12 11 10 38 38 H 1.09002 * 109.58772 * 174.42203 * 12 11 10 39 39 H 0.97004 * 119.99769 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.58494 * 293.81834 * 22 13 12 41 41 H 1.08995 * 109.70338 * 173.46421 * 22 13 12 42 42 H 1.09007 * 109.49649 * 301.33463 * 23 10 9 43 43 H 1.09005 * 109.50063 * 61.39753 * 23 10 9 44 44 H 1.08998 * 109.52040 * 283.02857 * 24 6 5 45 45 H 1.08997 * 109.52542 * 162.84371 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3093 -0.0176 5 6 4.2931 0.0151 0.4300 6 7 3.6463 -1.1070 -0.2636 7 6 4.3337 -1.9031 -1.1064 8 8 5.5158 -1.7001 -1.3062 9 7 3.7109 -2.9241 -1.7276 10 6 4.4582 -3.7898 -2.6432 11 6 4.4900 -3.1534 -4.0347 12 6 5.3013 -4.0441 -4.9808 13 7 4.7394 -5.4013 -4.9506 14 6 4.3714 -6.0299 -6.1102 15 1 3.5905 -6.7759 -6.0958 16 6 5.0022 -5.7086 -7.3043 17 7 6.1565 -5.0763 -7.2894 18 14 4.2129 -6.1736 -8.9323 19 1 2.9272 -6.8717 -8.6774 20 1 3.9596 -4.9457 -9.7281 21 1 5.1240 -7.0723 -9.6852 22 6 4.5801 -6.0714 -3.6528 23 6 3.7768 -5.1579 -2.7216 24 6 2.2167 -1.3252 0.0004 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 -0.3633 -0.5138 0.8899 28 1 1.5123 2.0351 0.0139 29 1 3.9313 1.5570 -1.0288 30 1 3.8879 2.1175 0.6583 31 1 5.3502 0.0468 0.1661 32 1 4.1847 -0.1059 1.5078 33 1 2.7679 -3.0863 -1.5679 34 1 5.4774 -3.9121 -2.2767 35 1 3.4723 -3.0535 -4.4124 36 1 4.9542 -2.1691 -3.9741 37 1 6.3410 -4.0717 -4.6547 38 1 5.2445 -3.6475 -5.9945 39 1 6.5974 -4.8520 -8.1238 40 1 5.5610 -6.2644 -3.2185 41 1 4.0487 -7.0133 -3.7883 42 1 3.7336 -5.6004 -1.7263 43 1 2.7657 -5.0390 -3.1111 44 1 2.0946 -1.8035 0.9722 45 1 1.7962 -1.9639 -0.7763 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619558881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:59 Heat of formation + Delta-G solvation = -10.609538 kcal Electronic energy + Delta-G solvation = -24227.463766 eV Core-core repulsion = 20858.829014 eV Total energy + Delta-G solvation = -3368.634752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58905 -39.56615 -38.49109 -36.07630 -34.77563 -33.99744 -32.82779 -31.68490 -30.97666 -27.94135 -27.26060 -26.31342 -24.24631 -23.90983 -23.18453 -21.39081 -20.97720 -19.42890 -18.71322 -18.47669 -17.48473 -16.84543 -16.39379 -16.06904 -15.69873 -15.52920 -15.35856 -15.27262 -14.97812 -14.73879 -14.62990 -14.35938 -14.06056 -13.55232 -13.50000 -13.19771 -13.05913 -12.88134 -12.81478 -12.64381 -12.57083 -12.37347 -12.10198 -12.01495 -11.84396 -11.67155 -11.54645 -11.42836 -11.17635 -10.59131 -10.16516 -9.72331 -9.52387 -8.72195 -7.87050 -5.33080 1.26101 1.47261 1.49055 1.57595 1.60083 2.11429 2.52090 2.90425 3.29218 3.65977 3.70707 3.84462 3.90441 4.08223 4.11149 4.21561 4.31567 4.36166 4.47072 4.49662 4.59988 4.66594 4.72023 4.79571 4.82016 4.84308 4.92184 4.97874 5.04881 5.06716 5.07911 5.12833 5.22010 5.31384 5.43256 5.48340 5.56279 5.58740 5.64742 5.69301 5.95356 6.05858 6.38602 6.95511 7.13255 7.54769 7.84347 8.37371 9.20284 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.003383 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.221137 B = 8274.685270 C = 8462.022152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.151 4.151 3 C -0.155 4.155 4 C -0.103 4.103 5 C 0.123 3.877 6 N -0.631 5.631 7 C 0.703 3.297 8 O -0.636 6.636 9 N -0.725 5.725 10 C 0.180 3.820 11 C -0.129 4.129 12 C 0.184 3.816 13 N -0.610 5.610 14 C -0.261 4.261 15 H 0.076 0.924 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.293 1.293 21 H -0.294 1.294 22 C 0.142 3.858 23 C -0.120 4.120 24 C 0.144 3.856 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.407 0.593 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.040 0.960 37 H -0.012 1.012 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.012 0.988 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.987 10.325 19.191 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.152 4.152 3 C -0.173 4.173 4 C -0.141 4.141 5 C 0.000 4.000 6 N -0.367 5.367 7 C 0.405 3.595 8 O -0.518 6.518 9 N -0.381 5.381 10 C 0.074 3.926 11 C -0.170 4.170 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.391 4.391 15 H 0.093 0.907 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.797 3.203 19 H -0.185 1.185 20 H -0.220 1.220 21 H -0.221 1.221 22 C 0.016 3.984 23 C -0.159 4.159 24 C 0.022 3.978 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.246 0.754 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.061 10.469 18.927 25.267 hybrid contribution 0.039 -0.039 -1.243 1.245 sum -13.022 10.430 17.684 24.312 Atomic orbital electron populations 1.20890 0.89802 1.03333 1.03029 1.21296 0.97344 0.94272 1.02252 1.21988 0.95805 0.97983 1.01512 1.20781 0.93427 0.97832 1.02078 1.21567 0.97471 0.84316 0.96620 1.47288 1.10825 1.31972 1.46657 1.16018 0.84457 0.80175 0.78882 1.90891 1.16496 1.74982 1.69400 1.45261 1.13900 1.31333 1.47628 1.20535 0.95165 0.89471 0.87396 1.22311 1.00501 0.97996 0.96148 1.20448 0.92010 0.84369 0.97428 1.44366 1.74048 1.12610 1.02283 1.19627 1.13208 1.20077 0.86181 0.90676 1.25879 0.95750 1.01437 1.01953 1.70227 1.15724 1.46427 1.26141 0.85175 0.78335 0.77065 0.79684 1.18481 1.21982 1.22071 1.21040 0.96732 0.95155 0.85481 1.22137 0.99870 0.93309 1.00623 1.20591 0.78254 0.96031 1.02944 0.91246 0.91268 0.90169 0.86244 0.92306 0.87669 0.90969 0.89229 0.75440 0.92692 0.92184 0.94159 0.99354 0.92681 0.94221 0.97036 0.91139 0.88978 0.90581 0.88446 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.00 71.24 0.71 -0.37 16 2 C -0.15 -2.14 5.92 -15.03 -0.09 -2.23 16 3 C -0.15 -2.34 9.41 26.99 0.25 -2.08 16 4 C -0.10 -1.75 6.29 29.65 0.19 -1.57 16 5 C 0.12 2.56 6.48 86.33 0.56 3.12 16 6 N -0.63 -14.88 2.96 -842.32 -2.50 -17.37 16 7 C 0.70 22.68 8.30 179.06 1.49 24.16 16 8 O -0.64 -26.93 15.49 -4.00 -0.06 -27.00 16 9 N -0.73 -20.76 4.98 -457.69 -2.28 -23.04 16 10 C 0.18 6.40 2.42 45.02 0.11 6.51 16 11 C -0.13 -5.45 5.65 30.67 0.17 -5.28 16 12 C 0.18 9.57 5.31 86.36 0.46 10.03 16 13 N -0.61 -31.14 2.99 -699.11 -2.09 -33.24 16 14 C -0.26 -14.37 9.59 84.04 0.81 -13.57 16 15 H 0.08 3.93 7.89 -2.91 -0.02 3.91 16 16 C -0.06 -3.13 4.91 84.86 0.42 -2.72 16 17 N -0.94 -57.47 11.19 21.65 0.24 -57.23 16 18 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 C 0.14 5.76 6.51 86.36 0.56 6.32 16 23 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 24 C 0.14 2.24 6.23 85.42 0.53 2.77 16 25 H 0.07 0.59 7.56 -2.39 -0.02 0.57 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.12 1.44 7.56 -2.91 -0.02 1.41 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 1.87 7.05 -2.39 -0.02 1.85 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 8.65 6.24 -92.71 -0.58 8.07 16 34 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 35 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.05 3.22 6.04 -2.39 -0.01 3.20 16 39 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.07 2.67 7.94 -2.39 -0.02 2.65 16 42 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 1.29 5.94 -2.39 -0.01 1.27 16 Total: -1.00 -74.02 350.88 2.07 -71.95 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.39 Total: 17.13 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 6.34 Total: 21.52 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -6.63 Total: -130.88 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.06 Total: -27.00 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.02 2.07 -71.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619558881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.341 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds