Wall clock time and date at job start Tue Mar 31 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00357 * 2 1 4 4 C 1.52992 * 109.47124 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47120 * 65.00465 * 4 3 2 6 6 C 1.46501 * 119.99926 * 269.99834 * 5 4 3 7 7 C 1.50706 * 109.46945 * 269.99999 * 6 5 4 8 8 H 1.07994 * 120.00343 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99875 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99906 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00063 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47034 * 89.99987 * 11 9 7 13 13 H 1.48496 * 109.47224 * 209.99989 * 11 9 7 14 14 H 1.48499 * 109.47084 * 330.00221 * 11 9 7 15 15 C 1.34782 * 120.00411 * 90.00063 * 5 4 3 16 16 O 1.21616 * 119.99444 * 359.97438 * 15 5 4 17 17 C 1.47094 * 120.00165 * 180.02562 * 15 5 4 18 18 C 1.33001 * 119.99965 * 176.64052 * 17 15 5 19 19 C 1.50701 * 119.99807 * 186.83269 * 18 17 15 20 20 C 1.53000 * 117.49946 * 245.96050 * 19 18 17 21 21 C 1.52997 * 117.49538 * 177.33562 * 19 18 17 22 22 C 1.50695 * 119.99809 * 6.83644 * 18 17 15 23 23 C 1.53001 * 117.50073 * 132.73420 * 22 18 17 24 24 C 1.52994 * 117.50181 * 64.11151 * 22 18 17 25 25 H 1.09005 * 109.47030 * 59.99430 * 1 2 3 26 26 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46885 * 299.99793 * 1 2 3 28 28 H 1.09001 * 109.46997 * 60.00205 * 3 2 1 29 29 H 1.09001 * 109.47164 * 300.00517 * 3 2 1 30 30 H 1.09004 * 109.47404 * 304.99871 * 4 3 2 31 31 H 1.09004 * 109.47095 * 185.00171 * 4 3 2 32 32 H 1.08997 * 109.47024 * 29.99717 * 6 5 4 33 33 H 1.09001 * 109.47336 * 149.99755 * 6 5 4 34 34 H 0.97005 * 120.00383 * 179.97438 * 10 9 7 35 35 H 1.07996 * 120.00336 * 356.63241 * 17 15 5 36 36 H 1.09006 * 115.55988 * 31.65248 * 19 18 17 37 37 H 1.08999 * 117.49626 * 145.02393 * 20 19 18 38 38 H 1.09001 * 117.49550 * 0.02562 * 20 19 18 39 39 H 1.09004 * 117.49990 * 0.02562 * 21 19 18 40 40 H 1.08997 * 117.51853 * 214.97208 * 21 19 18 41 41 H 1.09002 * 115.54652 * 278.43481 * 22 18 17 42 42 H 1.09002 * 117.49491 * 0.02562 * 23 22 18 43 43 H 1.08997 * 117.49871 * 145.01269 * 23 22 18 44 44 H 1.09008 * 117.50123 * 214.98227 * 24 22 18 45 45 H 1.09002 * 117.50285 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.5017 -1.2983 -0.9413 8 1 6.2203 -0.5464 -0.6505 9 6 5.8610 -2.6294 -0.9473 10 7 4.9860 -3.5451 -1.3019 11 14 7.5909 -3.1322 -0.4534 12 1 7.6346 -3.3835 1.0096 13 1 7.9731 -4.3697 -1.1797 14 1 8.5400 -2.0432 -0.7971 15 6 4.2634 1.3328 -2.3200 16 8 4.1555 2.5419 -2.2458 17 6 4.7059 0.7096 -3.5768 18 6 4.9245 1.4622 -4.6514 19 6 5.2274 0.8128 -5.9771 20 6 6.6209 1.0326 -6.5694 21 6 5.4078 1.7302 -7.1882 22 6 4.8695 2.9643 -4.5431 23 6 6.0116 3.7607 -5.1772 24 6 5.9113 3.6472 -3.6548 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8508 0.5683 0.8427 31 1 3.9785 2.1764 0.0902 32 1 3.3857 -1.3633 -0.6714 33 1 3.9138 -1.2124 -2.3645 34 1 5.2389 -4.4816 -1.3066 35 1 4.8533 -0.3591 -3.6270 36 1 4.7561 -0.1556 -6.1451 37 1 7.0663 0.2088 -7.1271 38 1 7.3187 1.6465 -6.0000 39 1 5.3079 2.8035 -7.0259 40 1 5.0555 1.3656 -8.1531 41 1 3.8716 3.4017 -4.5760 42 1 6.8027 3.1981 -5.6732 43 1 5.7653 4.7221 -5.6277 44 1 5.5989 4.5342 -3.1035 45 1 6.6363 3.0101 -3.1483 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728614241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:39 Heat of formation + Delta-G solvation = -3.941937 kcal Electronic energy + Delta-G solvation = -24511.037942 eV Core-core repulsion = 21110.399568 eV Total energy + Delta-G solvation = -3400.638374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60212 -38.33219 -37.23890 -35.46663 -34.61499 -32.58754 -31.84733 -29.66851 -26.96296 -26.00677 -24.40981 -22.81932 -22.62616 -22.01422 -21.92579 -21.81926 -18.95627 -17.65616 -16.61236 -16.41700 -15.99121 -15.63962 -15.36753 -14.97136 -14.79674 -14.42118 -14.32750 -13.91206 -13.69892 -13.36720 -12.51407 -12.41211 -12.24261 -11.91467 -11.71418 -11.55393 -11.41900 -11.35066 -11.09854 -10.91156 -10.86898 -10.82284 -10.73660 -10.50960 -10.26834 -10.07247 -9.90233 -9.74294 -9.62167 -9.32639 -8.62488 -8.46392 -8.37393 -7.52399 -6.07541 -4.14094 1.92044 3.27750 3.34571 3.38399 3.93304 4.00703 4.19259 4.21184 4.28250 4.43604 4.85469 4.97252 5.08192 5.16391 5.25348 5.35838 5.37157 5.42865 5.50170 5.60539 5.65558 5.69308 5.71024 5.76008 5.81358 5.88960 5.91479 6.00190 6.10048 6.21750 6.24477 6.26959 6.35711 6.42679 6.49679 6.62145 6.90022 6.98006 7.04607 7.42842 7.53270 7.71369 7.90049 8.19776 8.49922 8.91781 9.17488 9.52567 10.98835 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.006401 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.731566 B = 4373.064619 C = 6172.088414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.584 5.584 6 C 0.240 3.760 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.542 3.458 16 O -0.568 6.568 17 C -0.174 4.174 18 C -0.018 4.018 19 C -0.116 4.116 20 C -0.174 4.174 21 C -0.179 4.179 22 C -0.087 4.087 23 C -0.210 4.210 24 C -0.128 4.128 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 9.729 -5.874 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.120 3.880 7 C -0.573 4.573 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.333 3.667 16 O -0.451 6.451 17 C -0.194 4.194 18 C -0.020 4.020 19 C -0.134 4.134 20 C -0.210 4.210 21 C -0.215 4.215 22 C -0.105 4.105 23 C -0.247 4.247 24 C -0.165 4.165 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.178 9.937 -5.822 11.947 hybrid contribution 0.660 -0.497 0.410 0.922 sum -2.518 9.440 -5.412 11.168 Atomic orbital electron populations 1.22675 0.82273 1.02348 0.99088 1.88064 1.18569 1.27507 1.95180 1.23023 0.95445 0.84846 0.99579 1.21283 0.90897 0.99486 0.88387 1.48049 1.63455 1.09896 1.09944 1.19471 0.97063 0.72909 0.98532 1.21553 0.97382 0.92310 1.46029 0.92360 1.24916 0.97353 0.96393 0.95141 1.69939 1.34298 1.01073 1.47657 0.86576 0.84655 0.78064 0.78648 1.20598 1.21143 1.19865 1.18427 0.77725 0.86136 0.84386 1.90672 1.55725 1.14124 1.84546 1.22733 1.02774 1.01528 0.92376 1.20864 0.95689 0.92985 0.92418 1.21123 1.00657 1.00167 0.91472 1.23070 0.90968 1.03329 1.03657 1.23169 1.02285 0.99720 0.96355 1.20640 0.95141 0.90319 1.04406 1.23466 1.02157 1.01517 0.97544 1.22620 1.00717 1.02044 0.91144 0.94708 0.89901 0.94787 0.93442 0.93434 0.89711 0.89565 0.93387 0.94722 0.92702 0.84245 0.86769 0.88661 0.88402 0.87505 0.89014 0.87339 0.88574 0.89495 0.89229 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.90 9.53 -35.23 -0.34 -7.24 16 3 C 0.05 0.82 6.28 37.15 0.23 1.06 16 4 C 0.12 2.34 5.81 -4.05 -0.02 2.32 16 5 N -0.58 -12.73 2.42 -176.46 -0.43 -13.16 16 6 C 0.24 5.96 4.67 -5.19 -0.02 5.93 16 7 C -0.53 -14.32 9.39 -34.44 -0.32 -14.65 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 C 0.54 11.52 7.49 -12.67 -0.09 11.42 16 16 O -0.57 -12.02 11.97 5.26 0.06 -11.96 16 17 C -0.17 -3.45 8.79 -37.81 -0.33 -3.79 16 18 C -0.02 -0.30 5.37 -101.17 -0.54 -0.84 16 19 C -0.12 -1.66 6.01 -91.77 -0.55 -2.21 16 20 C -0.17 -2.16 9.61 -26.73 -0.26 -2.41 16 21 C -0.18 -2.08 9.48 -26.73 -0.25 -2.33 16 22 C -0.09 -1.39 3.57 -91.78 -0.33 -1.72 16 23 C -0.21 -2.78 7.75 -26.73 -0.21 -2.99 16 24 C -0.13 -2.05 7.87 -26.74 -0.21 -2.26 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.64 8.07 -51.93 -0.42 1.22 16 31 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 32 H 0.05 1.29 7.11 -51.93 -0.37 0.92 16 33 H 0.03 0.90 6.14 -51.93 -0.32 0.58 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.14 2.98 6.28 -52.49 -0.33 2.65 16 36 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.24 6.09 -51.93 -0.32 0.93 16 39 H 0.11 1.22 5.34 -51.93 -0.28 0.95 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.11 1.79 8.10 -51.93 -0.42 1.37 16 42 H 0.10 1.22 4.68 -51.93 -0.24 0.97 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 45 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 361.52 15.07 5.45 5.45 Total: -1.00 -29.40 361.52 -8.71 -38.11 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.27 Total: 6.46 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.90 Total: -9.23 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.31 Total: -37.64 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.27 Total: -19.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.40 -8.71 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728614241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.166 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds