Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00357 * 2 1 4 4 C 1.52992 * 109.47124 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47120 * 65.00465 * 4 3 2 6 6 C 1.46501 * 119.99926 * 269.99834 * 5 4 3 7 7 C 1.50706 * 109.46945 * 269.99999 * 6 5 4 8 8 H 1.07994 * 120.00343 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99875 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99906 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00063 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47034 * 89.99987 * 11 9 7 13 13 H 1.48496 * 109.47224 * 209.99989 * 11 9 7 14 14 H 1.48499 * 109.47084 * 330.00221 * 11 9 7 15 15 C 1.34782 * 120.00411 * 90.00063 * 5 4 3 16 16 O 1.21616 * 119.99444 * 359.97438 * 15 5 4 17 17 C 1.47094 * 120.00165 * 180.02562 * 15 5 4 18 18 C 1.33001 * 119.99965 * 176.64052 * 17 15 5 19 19 C 1.50701 * 119.99807 * 186.83269 * 18 17 15 20 20 C 1.53000 * 117.49946 * 245.96050 * 19 18 17 21 21 C 1.52997 * 117.49538 * 177.33562 * 19 18 17 22 22 C 1.50695 * 119.99809 * 6.83644 * 18 17 15 23 23 C 1.53001 * 117.50073 * 132.73420 * 22 18 17 24 24 C 1.52994 * 117.50181 * 64.11151 * 22 18 17 25 25 H 1.09005 * 109.47030 * 59.99430 * 1 2 3 26 26 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46885 * 299.99793 * 1 2 3 28 28 H 1.09001 * 109.46997 * 60.00205 * 3 2 1 29 29 H 1.09001 * 109.47164 * 300.00517 * 3 2 1 30 30 H 1.09004 * 109.47404 * 304.99871 * 4 3 2 31 31 H 1.09004 * 109.47095 * 185.00171 * 4 3 2 32 32 H 1.08997 * 109.47024 * 29.99717 * 6 5 4 33 33 H 1.09001 * 109.47336 * 149.99755 * 6 5 4 34 34 H 0.97005 * 120.00383 * 179.97438 * 10 9 7 35 35 H 1.07996 * 120.00336 * 356.63241 * 17 15 5 36 36 H 1.09006 * 115.55988 * 31.65248 * 19 18 17 37 37 H 1.08999 * 117.49626 * 145.02393 * 20 19 18 38 38 H 1.09001 * 117.49550 * 0.02562 * 20 19 18 39 39 H 1.09004 * 117.49990 * 0.02562 * 21 19 18 40 40 H 1.08997 * 117.51853 * 214.97208 * 21 19 18 41 41 H 1.09002 * 115.54652 * 278.43481 * 22 18 17 42 42 H 1.09002 * 117.49491 * 0.02562 * 23 22 18 43 43 H 1.08997 * 117.49871 * 145.01269 * 23 22 18 44 44 H 1.09008 * 117.50123 * 214.98227 * 24 22 18 45 45 H 1.09002 * 117.50285 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.5017 -1.2983 -0.9413 8 1 6.2203 -0.5464 -0.6505 9 6 5.8610 -2.6294 -0.9473 10 7 4.9860 -3.5451 -1.3019 11 14 7.5909 -3.1322 -0.4534 12 1 7.6346 -3.3835 1.0096 13 1 7.9731 -4.3697 -1.1797 14 1 8.5400 -2.0432 -0.7971 15 6 4.2634 1.3328 -2.3200 16 8 4.1555 2.5419 -2.2458 17 6 4.7059 0.7096 -3.5768 18 6 4.9245 1.4622 -4.6514 19 6 5.2274 0.8128 -5.9771 20 6 6.6209 1.0326 -6.5694 21 6 5.4078 1.7302 -7.1882 22 6 4.8695 2.9643 -4.5431 23 6 6.0116 3.7607 -5.1772 24 6 5.9113 3.6472 -3.6548 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8508 0.5683 0.8427 31 1 3.9785 2.1764 0.0902 32 1 3.3857 -1.3633 -0.6714 33 1 3.9138 -1.2124 -2.3645 34 1 5.2389 -4.4816 -1.3066 35 1 4.8533 -0.3591 -3.6270 36 1 4.7561 -0.1556 -6.1451 37 1 7.0663 0.2088 -7.1271 38 1 7.3187 1.6465 -6.0000 39 1 5.3079 2.8035 -7.0259 40 1 5.0555 1.3656 -8.1531 41 1 3.8716 3.4017 -4.5760 42 1 6.8027 3.1981 -5.6732 43 1 5.7653 4.7221 -5.6277 44 1 5.5989 4.5342 -3.1035 45 1 6.6363 3.0101 -3.1483 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728614241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -19.262158 kcal Electronic energy + Delta-G solvation = -24511.702277 eV Core-core repulsion = 21110.399568 eV Total energy + Delta-G solvation = -3401.302709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09177 -39.67639 -38.60129 -36.77983 -36.20685 -34.56462 -33.30056 -31.20289 -28.86767 -27.26564 -25.83478 -24.77691 -23.82310 -23.27099 -23.12562 -22.94965 -20.40106 -19.14954 -18.51786 -18.08201 -17.50402 -17.07380 -16.67031 -16.41651 -16.17668 -16.05436 -15.70135 -15.19950 -15.10962 -14.79646 -14.28074 -13.89371 -13.67271 -13.52845 -13.31055 -13.04781 -12.75426 -12.74627 -12.61268 -12.51620 -12.27831 -12.17165 -12.08453 -11.93766 -11.85922 -11.66476 -11.37934 -11.18001 -10.97230 -10.63154 -10.58344 -10.05805 -9.85675 -9.26897 -8.16763 -6.32135 0.45701 1.39797 1.40397 1.51072 2.33046 2.45775 2.51382 2.94541 3.00628 3.05257 3.12077 3.62354 3.72025 3.97745 4.11277 4.15630 4.15841 4.17524 4.23630 4.30355 4.39249 4.48471 4.51551 4.54435 4.65541 4.66535 4.70229 4.82346 4.90337 4.92200 5.00340 5.05639 5.08736 5.19544 5.26821 5.31431 5.33623 5.38668 5.49302 5.60566 5.71326 5.96036 6.11384 6.29315 6.64633 6.88468 7.36143 7.51440 8.88367 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.006401 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.731566 B = 4373.064619 C = 6172.088414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.058 3.942 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.264 3.736 7 C -0.544 4.544 8 H 0.048 0.952 9 C 0.019 3.981 10 N -0.921 5.921 11 Si 0.957 3.043 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.272 1.272 15 C 0.540 3.460 16 O -0.571 6.571 17 C -0.221 4.221 18 C 0.018 3.982 19 C -0.153 4.153 20 C -0.166 4.166 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.170 4.170 24 C -0.144 4.144 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.023 0.977 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 11.168 -7.293 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.020 4.020 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.143 3.857 7 C -0.583 4.583 8 H 0.067 0.933 9 C -0.181 4.181 10 N -0.560 5.560 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.203 1.203 14 H -0.197 1.197 15 C 0.332 3.668 16 O -0.455 6.455 17 C -0.242 4.242 18 C 0.016 3.984 19 C -0.171 4.171 20 C -0.203 4.203 21 C -0.188 4.188 22 C -0.124 4.124 23 C -0.206 4.206 24 C -0.181 4.181 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.408 11.397 -7.235 13.712 hybrid contribution 0.379 -0.888 0.782 1.242 sum -2.029 10.509 -6.453 12.498 Atomic orbital electron populations 1.22872 0.80009 1.03316 1.00614 1.88012 1.21193 1.28443 1.95470 1.22922 0.93660 0.84636 1.00742 1.21441 0.92849 0.99291 0.86910 1.48008 1.64293 1.08706 1.11274 1.18941 0.95491 0.74739 0.96522 1.21717 0.98023 0.92451 1.46075 0.93328 1.25674 1.01128 0.96296 0.94967 1.70042 1.36163 1.01437 1.48404 0.85580 0.79951 0.77759 0.78539 1.19862 1.20327 1.19663 1.18633 0.77386 0.86163 0.84596 1.90645 1.56198 1.13908 1.84738 1.22487 1.07764 1.00602 0.93346 1.21265 0.90880 0.93686 0.92598 1.21204 1.03295 1.01136 0.91427 1.23172 0.90138 1.03906 1.03056 1.23283 1.00333 0.99501 0.95656 1.20672 0.95834 0.89620 1.06322 1.23547 0.99994 1.01971 0.95124 1.22541 1.00581 1.01801 0.93220 0.94046 0.89339 0.92268 0.90038 0.94199 0.90666 0.88746 0.95856 0.96562 0.92416 0.86761 0.87147 0.87112 0.88513 0.86801 0.86706 0.87581 0.87485 0.86579 0.89244 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -15.46 9.53 -148.98 -1.42 -16.88 16 3 C 0.06 1.95 6.28 71.98 0.45 2.41 16 4 C 0.12 4.63 5.81 86.38 0.50 5.13 16 5 N -0.59 -27.18 2.42 -830.44 -2.01 -29.19 16 6 C 0.26 13.91 4.67 85.63 0.40 14.31 16 7 C -0.54 -30.37 9.39 25.60 0.24 -30.13 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.02 1.07 5.46 84.66 0.46 1.53 16 10 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 11 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 C 0.54 23.98 7.49 86.57 0.65 24.63 16 16 O -0.57 -24.77 11.97 -4.08 -0.05 -24.81 16 17 C -0.22 -9.27 8.79 23.43 0.21 -9.07 16 18 C 0.02 0.61 5.37 -17.62 -0.09 0.51 16 19 C -0.15 -4.21 6.01 -11.54 -0.07 -4.28 16 20 C -0.17 -3.70 9.61 30.60 0.29 -3.40 16 21 C -0.15 -3.00 9.48 30.60 0.29 -2.71 16 22 C -0.11 -3.28 3.57 -11.54 -0.04 -3.32 16 23 C -0.17 -3.98 7.75 30.59 0.24 -3.74 16 24 C -0.14 -4.50 7.87 30.59 0.24 -4.26 16 25 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 3.03 8.07 -2.38 -0.02 3.01 16 31 H 0.09 3.47 7.42 -2.38 -0.02 3.45 16 32 H 0.02 1.33 7.11 -2.39 -0.02 1.31 16 33 H 0.02 0.91 6.14 -2.39 -0.01 0.90 16 34 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 35 H 0.11 5.30 6.28 -2.91 -0.02 5.28 16 36 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.10 2.19 6.09 -2.39 -0.01 2.18 16 39 H 0.11 2.12 5.34 -2.38 -0.01 2.11 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.11 3.38 8.10 -2.39 -0.02 3.36 16 42 H 0.11 2.31 4.68 -2.39 -0.01 2.30 16 43 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.51 361.52 4.82 -60.69 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.97 Total: 28.02 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.02 Total: -10.38 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.72 Total: -82.42 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.47 Total: -41.69 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.51 4.82 -60.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728614241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.431 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds