Wall clock time and date at job start Tue Mar 31 2020 06:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.46766 * 2 1 4 4 C 1.46903 * 110.99832 * 163.69856 * 3 2 1 5 5 C 1.50698 * 109.47125 * 287.45902 * 4 3 2 6 6 C 1.38301 * 119.93235 * 89.99917 * 5 4 3 7 7 C 1.38100 * 120.06656 * 179.97438 * 6 5 4 8 8 C 1.38877 * 119.93375 * 0.02562 * 7 6 5 9 9 O 1.35751 * 120.07074 * 180.02562 * 8 7 6 10 10 C 1.34832 * 116.99757 * 4.88145 * 9 8 7 11 11 H 1.07996 * 119.99789 * 354.24740 * 10 9 8 12 12 C 1.38651 * 119.99802 * 174.25322 * 10 9 8 13 13 N 1.31556 * 120.00181 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46520 * 90.00138 * 14 12 10 16 16 H 1.48496 * 109.47284 * 209.99982 * 14 12 10 17 17 H 1.48497 * 109.47093 * 330.00585 * 14 12 10 18 18 C 1.38881 * 119.85897 * 0.28114 * 8 7 6 19 19 C 1.38094 * 119.93093 * 359.44400 * 18 8 7 20 20 C 1.46902 * 110.99987 * 287.65373 * 3 2 1 21 21 C 1.53004 * 109.47005 * 147.97353 * 20 3 2 22 22 C 1.52998 * 109.47409 * 57.33002 * 21 20 3 23 23 C 1.52996 * 109.47073 * 177.33348 * 21 20 3 24 24 O 1.42902 * 109.46783 * 297.33126 * 21 20 3 25 25 H 1.08997 * 109.47226 * 306.85991 * 1 2 3 26 26 H 1.09008 * 109.46938 * 66.86183 * 1 2 3 27 27 H 1.09006 * 109.46994 * 186.85807 * 1 2 3 28 28 H 1.09000 * 109.47222 * 239.99861 * 2 1 3 29 29 H 1.08995 * 109.46919 * 119.99881 * 2 1 3 30 30 H 1.08997 * 109.46949 * 167.45183 * 4 3 2 31 31 H 1.09003 * 109.46891 * 47.45767 * 4 3 2 32 32 H 1.08001 * 119.96372 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.02915 * 180.02562 * 7 6 5 34 34 H 0.97001 * 119.99982 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.03201 * 179.71834 * 18 8 7 36 36 H 1.08008 * 119.96641 * 180.27471 * 19 18 8 37 37 H 1.09001 * 109.46597 * 267.96775 * 20 3 2 38 38 H 1.08997 * 109.47182 * 27.96818 * 20 3 2 39 39 H 1.09000 * 109.47110 * 49.53695 * 22 21 20 40 40 H 1.08997 * 109.47156 * 169.54156 * 22 21 20 41 41 H 1.09003 * 109.46908 * 289.54490 * 22 21 20 42 42 H 1.08999 * 109.47597 * 59.99553 * 23 21 20 43 43 H 1.09004 * 109.47400 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46934 * 299.99854 * 23 21 20 45 45 H 0.96702 * 113.99648 * 304.75272 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4362 1.4426 0.3850 5 6 3.5674 1.1651 1.8603 6 6 3.7377 -0.1331 2.3058 7 6 3.8589 -0.3906 3.6572 8 6 3.8090 0.6556 4.5692 9 8 3.9283 0.4057 5.8981 10 6 4.1941 -0.8655 6.2605 11 1 4.2102 -1.6472 5.5154 12 6 4.4464 -1.1692 7.5896 13 7 4.4271 -0.2169 8.4970 14 14 4.8139 -2.9306 8.0918 15 1 6.2774 -3.1714 8.0170 16 1 4.3454 -3.1568 9.4826 17 1 4.1113 -3.8636 7.1748 18 6 3.6315 1.9574 4.1190 19 6 3.5167 2.2090 2.7661 20 6 1.8030 2.0200 -1.3069 21 6 1.5463 3.5156 -1.1109 22 6 2.7276 4.1428 -0.3679 23 6 1.3866 4.1887 -2.4755 24 8 0.3523 3.6978 -0.3472 25 1 -0.3633 0.6164 0.8222 26 1 -0.3633 0.4039 -0.9451 27 1 -0.3633 -1.0204 0.1227 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8324 2.4339 0.1650 31 1 3.9960 0.6948 -0.1767 32 1 3.7760 -0.9463 1.5961 33 1 3.9922 -1.4045 4.0044 34 1 4.6033 -0.4294 9.4269 35 1 3.5878 2.7726 4.8261 36 1 3.3831 3.2217 2.4151 37 1 2.6872 1.8816 -1.9290 38 1 0.9410 1.5641 -1.7939 39 1 3.6589 3.8465 -0.8505 40 1 2.6359 5.2287 -0.3907 41 1 2.7294 3.7998 0.6667 42 1 0.5450 3.7419 -3.0049 43 1 1.2042 5.2542 -2.3360 44 1 2.2974 4.0496 -3.0581 45 1 -0.4250 3.2619 -0.7226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734001953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:09 Heat of formation + Delta-G solvation = -48.297534 kcal Electronic energy + Delta-G solvation = -24032.175990 eV Core-core repulsion = 20629.614213 eV Total energy + Delta-G solvation = -3402.561777 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.56086 -38.69933 -36.97794 -35.73070 -32.59056 -32.32171 -31.09604 -30.13794 -29.24437 -27.51795 -26.28849 -25.21118 -23.94079 -22.01264 -21.22904 -20.31673 -20.17462 -17.93536 -16.91763 -16.82445 -15.86481 -15.52407 -14.92110 -14.68695 -14.51153 -14.44527 -14.02505 -13.68603 -13.50269 -13.47330 -13.07636 -12.71616 -12.55108 -12.53048 -12.27373 -12.20911 -11.86787 -11.77659 -11.66660 -11.58707 -11.24138 -11.02119 -10.89083 -10.83409 -10.60955 -10.51388 -10.49992 -10.34047 -9.80838 -9.27821 -8.79554 -8.15019 -8.07516 -7.11008 -6.41463 -4.00269 2.28409 2.35106 3.14307 3.15161 3.19910 3.89378 3.99424 4.30536 4.60206 4.73806 4.82394 4.95326 5.10495 5.13217 5.16935 5.27372 5.34161 5.35443 5.40706 5.43417 5.55509 5.63032 5.64960 5.73045 5.80457 5.83889 5.86375 5.91151 5.94855 6.02973 6.13085 6.24269 6.30495 6.32821 6.50694 6.78589 6.96275 7.07197 7.19077 7.22050 7.33953 7.46793 7.50229 7.74219 7.89616 8.03896 9.04337 9.75901 10.76778 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.003298 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.033531 B = 8487.177802 C = 8936.086232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.518 5.518 4 C 0.096 3.904 5 C -0.172 4.172 6 C -0.068 4.068 7 C -0.234 4.234 8 C 0.155 3.845 9 O -0.179 6.179 10 C -0.391 4.391 11 H 0.091 0.909 12 C 0.039 3.961 13 N -0.863 5.863 14 Si 0.940 3.060 15 H -0.274 1.274 16 H -0.278 1.278 17 H -0.268 1.268 18 C -0.193 4.193 19 C -0.053 4.053 20 C 0.025 3.975 21 C 0.136 3.864 22 C -0.146 4.146 23 C -0.178 4.178 24 O -0.544 6.544 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 3.551 -20.806 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.242 5.242 4 C -0.030 4.030 5 C -0.173 4.173 6 C -0.086 4.086 7 C -0.254 4.254 8 C 0.102 3.898 9 O -0.083 6.083 10 C -0.467 4.467 11 H 0.108 0.892 12 C -0.165 4.165 13 N -0.499 5.499 14 Si 0.765 3.235 15 H -0.199 1.199 16 H -0.203 1.203 17 H -0.192 1.192 18 C -0.212 4.212 19 C -0.071 4.071 20 C -0.104 4.104 21 C 0.095 3.905 22 C -0.202 4.202 23 C -0.236 4.236 24 O -0.348 6.348 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.794 4.309 -19.618 20.650 hybrid contribution 0.273 -1.833 -0.815 2.024 sum -4.520 2.476 -20.433 21.073 Atomic orbital electron populations 1.21768 0.95244 1.01376 1.01756 1.22179 0.95916 0.89172 1.00939 1.61970 1.18559 1.16902 1.26790 1.21229 0.87315 1.01314 0.93155 1.19043 1.11247 0.93395 0.93652 1.20572 0.98197 0.95206 0.94674 1.21101 1.11628 0.99627 0.92996 1.19391 0.92397 0.93114 0.84915 1.83986 1.76756 1.30692 1.16849 1.21306 1.49379 0.82277 0.93765 0.89171 1.25275 0.96659 0.99886 0.94705 1.70040 1.45469 1.32408 1.01944 0.85731 0.78892 0.80529 0.78381 1.19926 1.20275 1.19245 1.20214 1.11134 0.94537 0.95354 1.20447 0.97197 0.97658 0.91818 1.22895 1.00853 0.95627 0.90984 1.21115 0.86710 0.92697 0.89985 1.22000 0.95214 1.00353 1.02668 1.22496 1.02010 1.01721 0.97373 1.86622 1.18135 1.76999 1.53039 0.91315 0.93691 0.92734 0.95778 0.89698 0.89548 0.95338 0.88096 0.85771 0.92073 0.86644 0.87142 0.93907 0.91138 0.91746 0.92628 0.89721 0.92652 0.91690 0.91915 0.78636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.16 0.37 -1.19 16 2 C 0.05 0.56 5.45 -3.82 -0.02 0.54 16 3 N -0.52 -6.53 3.99 -236.06 -0.94 -7.47 16 4 C 0.10 1.31 4.15 -4.98 -0.02 1.29 16 5 C -0.17 -2.95 5.10 -104.58 -0.53 -3.49 16 6 C -0.07 -1.25 8.12 -39.61 -0.32 -1.57 16 7 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 8 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 9 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 10 C -0.39 -11.07 9.48 30.88 0.29 -10.77 16 11 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 12 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 13 N -0.86 -25.63 13.67 55.48 0.76 -24.88 16 14 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.19 -4.20 9.99 -39.40 -0.39 -4.59 16 19 C -0.05 -0.97 9.62 -39.61 -0.38 -1.35 16 20 C 0.03 0.25 4.19 -3.82 -0.02 0.23 16 21 C 0.14 1.36 1.18 -90.62 -0.11 1.25 16 22 C -0.15 -1.57 7.18 37.16 0.27 -1.30 16 23 C -0.18 -1.37 8.82 37.16 0.33 -1.04 16 24 O -0.54 -6.32 12.90 -35.23 -0.45 -6.78 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.41 6.82 -51.92 -0.35 0.05 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.27 8.05 -51.93 -0.42 -0.15 16 29 H 0.08 1.21 5.37 -51.93 -0.28 0.93 16 30 H 0.09 1.08 4.18 -51.93 -0.22 0.86 16 31 H 0.03 0.37 7.99 -51.93 -0.41 -0.04 16 32 H 0.10 1.61 7.53 -52.49 -0.40 1.21 16 33 H 0.12 2.74 5.63 -52.49 -0.30 2.45 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 36 H 0.11 1.78 6.42 -52.48 -0.34 1.44 16 37 H 0.04 0.41 7.81 -51.93 -0.41 0.00 16 38 H 0.07 0.63 6.31 -51.93 -0.33 0.30 16 39 H 0.06 0.60 7.01 -51.93 -0.36 0.24 16 40 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 41 H 0.08 1.10 5.03 -51.93 -0.26 0.84 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.37 3.07 9.03 45.56 0.41 3.49 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -31.49 353.25 -7.62 -39.11 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.02 Total: 7.14 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.26 Total: -22.95 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: -0.18 Total: -32.34 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.45 Total: -11.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.49 -7.62 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734001953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.191 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds