Wall clock time and date at job start Tue Mar 31 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.46766 * 2 1 4 4 C 1.46903 * 110.99832 * 163.69856 * 3 2 1 5 5 C 1.50698 * 109.47125 * 287.45902 * 4 3 2 6 6 C 1.38301 * 119.93235 * 89.99917 * 5 4 3 7 7 C 1.38100 * 120.06656 * 179.97438 * 6 5 4 8 8 C 1.38877 * 119.93375 * 0.02562 * 7 6 5 9 9 O 1.35751 * 120.07074 * 180.02562 * 8 7 6 10 10 C 1.34832 * 116.99757 * 4.88145 * 9 8 7 11 11 H 1.07996 * 119.99789 * 354.24740 * 10 9 8 12 12 C 1.38651 * 119.99802 * 174.25322 * 10 9 8 13 13 N 1.31556 * 120.00181 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46520 * 90.00138 * 14 12 10 16 16 H 1.48496 * 109.47284 * 209.99982 * 14 12 10 17 17 H 1.48497 * 109.47093 * 330.00585 * 14 12 10 18 18 C 1.38881 * 119.85897 * 0.28114 * 8 7 6 19 19 C 1.38094 * 119.93093 * 359.44400 * 18 8 7 20 20 C 1.46902 * 110.99987 * 287.65373 * 3 2 1 21 21 C 1.53004 * 109.47005 * 147.97353 * 20 3 2 22 22 C 1.52998 * 109.47409 * 57.33002 * 21 20 3 23 23 C 1.52996 * 109.47073 * 177.33348 * 21 20 3 24 24 O 1.42902 * 109.46783 * 297.33126 * 21 20 3 25 25 H 1.08997 * 109.47226 * 306.85991 * 1 2 3 26 26 H 1.09008 * 109.46938 * 66.86183 * 1 2 3 27 27 H 1.09006 * 109.46994 * 186.85807 * 1 2 3 28 28 H 1.09000 * 109.47222 * 239.99861 * 2 1 3 29 29 H 1.08995 * 109.46919 * 119.99881 * 2 1 3 30 30 H 1.08997 * 109.46949 * 167.45183 * 4 3 2 31 31 H 1.09003 * 109.46891 * 47.45767 * 4 3 2 32 32 H 1.08001 * 119.96372 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.02915 * 180.02562 * 7 6 5 34 34 H 0.97001 * 119.99982 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.03201 * 179.71834 * 18 8 7 36 36 H 1.08008 * 119.96641 * 180.27471 * 19 18 8 37 37 H 1.09001 * 109.46597 * 267.96775 * 20 3 2 38 38 H 1.08997 * 109.47182 * 27.96818 * 20 3 2 39 39 H 1.09000 * 109.47110 * 49.53695 * 22 21 20 40 40 H 1.08997 * 109.47156 * 169.54156 * 22 21 20 41 41 H 1.09003 * 109.46908 * 289.54490 * 22 21 20 42 42 H 1.08999 * 109.47597 * 59.99553 * 23 21 20 43 43 H 1.09004 * 109.47400 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46934 * 299.99854 * 23 21 20 45 45 H 0.96702 * 113.99648 * 304.75272 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4362 1.4426 0.3850 5 6 3.5674 1.1651 1.8603 6 6 3.7377 -0.1331 2.3058 7 6 3.8589 -0.3906 3.6572 8 6 3.8090 0.6556 4.5692 9 8 3.9283 0.4057 5.8981 10 6 4.1941 -0.8655 6.2605 11 1 4.2102 -1.6472 5.5154 12 6 4.4464 -1.1692 7.5896 13 7 4.4271 -0.2169 8.4970 14 14 4.8139 -2.9306 8.0918 15 1 6.2774 -3.1714 8.0170 16 1 4.3454 -3.1568 9.4826 17 1 4.1113 -3.8636 7.1748 18 6 3.6315 1.9574 4.1190 19 6 3.5167 2.2090 2.7661 20 6 1.8030 2.0200 -1.3069 21 6 1.5463 3.5156 -1.1109 22 6 2.7276 4.1428 -0.3679 23 6 1.3866 4.1887 -2.4755 24 8 0.3523 3.6978 -0.3472 25 1 -0.3633 0.6164 0.8222 26 1 -0.3633 0.4039 -0.9451 27 1 -0.3633 -1.0204 0.1227 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8324 2.4339 0.1650 31 1 3.9960 0.6948 -0.1767 32 1 3.7760 -0.9463 1.5961 33 1 3.9922 -1.4045 4.0044 34 1 4.6033 -0.4294 9.4269 35 1 3.5878 2.7726 4.8261 36 1 3.3831 3.2217 2.4151 37 1 2.6872 1.8816 -1.9290 38 1 0.9410 1.5641 -1.7939 39 1 3.6589 3.8465 -0.8505 40 1 2.6359 5.2287 -0.3907 41 1 2.7294 3.7998 0.6667 42 1 0.5450 3.7419 -3.0049 43 1 1.2042 5.2542 -2.3360 44 1 2.2974 4.0496 -3.0581 45 1 -0.4250 3.2619 -0.7226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734001953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:08 Heat of formation + Delta-G solvation = -70.399473 kcal Electronic energy + Delta-G solvation = -24033.134402 eV Core-core repulsion = 20629.614213 eV Total energy + Delta-G solvation = -3403.520189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93553 -40.01227 -38.39277 -36.95258 -34.31547 -33.40639 -32.34083 -31.78081 -30.40189 -28.30906 -27.71964 -26.78222 -25.09082 -23.64353 -22.45971 -21.55490 -21.10359 -19.81786 -18.80267 -17.66104 -16.93985 -16.57223 -16.37226 -16.05092 -15.91662 -15.65172 -15.44394 -15.18217 -14.95786 -14.53025 -14.32943 -14.25056 -13.76885 -13.50613 -13.42469 -13.26573 -13.03107 -12.93330 -12.71973 -12.59732 -12.51673 -12.46690 -12.28061 -12.13192 -12.06718 -11.68701 -11.63297 -11.45719 -11.12201 -10.78290 -10.64012 -9.73931 -9.08806 -8.84855 -8.46315 -6.14587 0.62245 0.71338 1.34469 1.44155 1.52263 2.18149 2.74765 3.02969 3.29658 3.53991 3.59204 3.92399 3.98541 4.04755 4.10512 4.21243 4.23294 4.28948 4.37380 4.55583 4.59827 4.61239 4.65306 4.71426 4.78349 4.81690 4.83589 4.98310 5.03920 5.06730 5.09341 5.15567 5.19435 5.19995 5.32162 5.34509 5.42340 5.49556 5.62445 5.73025 5.83869 6.04109 6.20181 6.27576 6.34008 6.98351 7.08903 7.80506 8.77259 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.003298 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.033531 B = 8487.177802 C = 8936.086232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.098 3.902 5 C -0.145 4.145 6 C -0.063 4.063 7 C -0.242 4.242 8 C 0.114 3.886 9 O -0.235 6.235 10 C -0.413 4.413 11 H 0.101 0.899 12 C -0.024 4.024 13 N -0.922 5.922 14 Si 1.019 2.981 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.253 1.253 18 C -0.207 4.207 19 C -0.048 4.048 20 C 0.028 3.972 21 C 0.134 3.866 22 C -0.149 4.149 23 C -0.171 4.171 24 O -0.568 6.568 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.272 0.728 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 2.714 -24.859 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.028 4.028 5 C -0.146 4.146 6 C -0.081 4.081 7 C -0.261 4.261 8 C 0.064 3.936 9 O -0.141 6.141 10 C -0.489 4.489 11 H 0.118 0.882 12 C -0.221 4.221 13 N -0.561 5.561 14 Si 0.838 3.162 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.176 1.176 18 C -0.226 4.226 19 C -0.067 4.067 20 C -0.100 4.100 21 C 0.092 3.908 22 C -0.206 4.206 23 C -0.229 4.229 24 O -0.375 6.375 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.156 0.844 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.057 3.487 -23.744 24.526 hybrid contribution 0.264 -1.396 0.097 1.424 sum -4.793 2.091 -23.647 24.219 Atomic orbital electron populations 1.21715 0.94381 1.01527 1.02006 1.22191 0.96670 0.88959 1.00591 1.61854 1.17439 1.17348 1.29016 1.21244 0.88700 1.02771 0.90109 1.19581 1.06690 0.92359 0.95995 1.20907 0.96758 0.96915 0.93528 1.21201 1.11886 0.98669 0.94326 1.19896 0.94473 0.94954 0.84301 1.83947 1.79719 1.31226 1.19247 1.21813 1.49755 0.82724 0.94635 0.88190 1.26603 0.96141 1.05094 0.94274 1.70192 1.48134 1.35280 1.02450 0.84587 0.79178 0.74227 0.78205 1.18761 1.19570 1.17633 1.20440 1.11594 0.93552 0.96997 1.20781 0.95894 0.99597 0.90408 1.22941 1.02141 0.95246 0.89636 1.21214 0.85846 0.92919 0.90772 1.22033 0.96592 1.00531 1.01452 1.22415 1.03209 1.01183 0.96129 1.86591 1.19224 1.77518 1.54175 0.93536 0.91533 0.92092 0.93968 0.92076 0.88011 0.93730 0.84805 0.86523 0.91866 0.87335 0.84430 0.92465 0.89584 0.90135 0.92643 0.92174 0.91315 0.92256 0.90720 0.77230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 71.98 0.71 -1.91 16 2 C 0.04 0.92 5.45 86.30 0.47 1.39 16 3 N -0.53 -11.50 3.99 -900.77 -3.59 -15.09 16 4 C 0.10 2.30 4.15 85.56 0.35 2.65 16 5 C -0.15 -4.66 5.10 -19.83 -0.10 -4.76 16 6 C -0.06 -2.20 8.12 22.25 0.18 -2.02 16 7 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 8 C 0.11 5.89 6.65 22.58 0.15 6.04 16 9 O -0.23 -14.58 9.76 -22.77 -0.22 -14.81 16 10 C -0.41 -24.65 9.48 67.92 0.64 -24.01 16 11 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 12 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 13 N -0.92 -57.80 13.67 21.61 0.30 -57.51 16 14 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 17 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 18 C -0.21 -9.31 9.99 22.39 0.22 -9.09 16 19 C -0.05 -1.74 9.62 22.25 0.21 -1.52 16 20 C 0.03 0.44 4.19 86.30 0.36 0.80 16 21 C 0.13 2.21 1.18 -10.79 -0.01 2.20 16 22 C -0.15 -2.78 7.18 71.98 0.52 -2.27 16 23 C -0.17 -2.00 8.82 71.98 0.63 -1.37 16 24 O -0.57 -11.86 12.90 -148.98 -1.92 -13.78 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.07 0.96 6.82 -2.38 -0.02 0.94 16 27 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.04 0.75 8.05 -2.39 -0.02 0.73 16 29 H 0.06 1.58 5.37 -2.39 -0.01 1.57 16 30 H 0.10 2.12 4.18 -2.39 -0.01 2.11 16 31 H 0.04 0.94 7.99 -2.39 -0.02 0.92 16 32 H 0.13 3.84 7.53 -2.91 -0.02 3.82 16 33 H 0.12 5.31 5.63 -2.91 -0.02 5.29 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.14 4.19 6.42 -2.91 -0.02 4.18 16 37 H 0.06 0.77 7.81 -2.39 -0.02 0.75 16 38 H 0.09 1.10 6.31 -2.39 -0.02 1.09 16 39 H 0.08 1.20 7.01 -2.39 -0.02 1.18 16 40 H 0.05 1.01 8.11 -2.39 -0.02 1.00 16 41 H 0.06 1.42 5.03 -2.39 -0.01 1.40 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.38 5.38 9.03 -74.06 -0.67 4.71 16 Total: -1.00 -73.56 353.25 1.93 -71.63 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.33 Total: 29.33 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 5.02 Total: -45.40 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -3.30 Total: -72.60 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -2.14 Total: -28.59 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.56 1.93 -71.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734001953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.226 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds