Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47450 * 2 1 4 4 C 1.35997 * 117.00101 * 180.02562 * 3 2 1 5 5 C 1.38570 * 120.07276 * 359.72644 * 4 3 2 6 6 C 1.38234 * 119.99756 * 179.70053 * 5 4 3 7 7 C 1.38259 * 120.14616 * 0.59782 * 6 5 4 8 8 C 1.38233 * 120.14568 * 359.67840 * 7 6 5 9 9 C 1.50707 * 119.99902 * 180.02562 * 8 7 6 10 10 N 1.46907 * 109.47086 * 254.32715 * 9 8 7 11 11 C 1.46900 * 110.99878 * 199.16598 * 10 9 8 12 12 C 1.50694 * 109.46841 * 163.39521 * 11 10 9 13 13 H 1.08000 * 120.00265 * 356.48665 * 12 11 10 14 14 C 1.37879 * 119.99984 * 176.48031 * 12 11 10 15 15 N 1.31516 * 119.99903 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00199 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46886 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46815 * 120.00235 * 16 14 12 19 19 H 1.48494 * 109.47657 * 240.00390 * 16 14 12 20 20 C 1.46904 * 110.99911 * 75.21019 * 10 9 8 21 21 C 1.52997 * 109.46704 * 71.27419 * 20 10 9 22 22 C 1.53001 * 109.46794 * 191.27471 * 20 10 9 23 23 C 1.38565 * 120.00439 * 0.02562 * 8 7 6 24 24 O 1.35995 * 120.07622 * 180.02562 * 23 8 7 25 25 H 1.08999 * 109.47209 * 59.99389 * 1 2 3 26 26 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46670 * 299.99891 * 1 2 3 28 28 H 1.08999 * 109.47209 * 120.00611 * 2 1 3 29 29 H 1.09003 * 109.46670 * 240.00109 * 2 1 3 30 30 H 1.07997 * 119.99483 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.92891 * 180.29921 * 6 5 4 32 32 H 1.08007 * 119.92643 * 179.70241 * 7 6 5 33 33 H 1.08998 * 109.47394 * 14.32568 * 9 8 7 34 34 H 1.08996 * 109.47058 * 134.32737 * 9 8 7 35 35 H 1.09001 * 109.46744 * 283.39551 * 11 10 9 36 36 H 1.09003 * 109.47117 * 43.39972 * 11 10 9 37 37 H 0.97002 * 119.99865 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.47085 * 311.27575 * 20 10 9 39 39 H 1.09004 * 109.46803 * 69.35940 * 21 20 10 40 40 H 1.09007 * 109.46886 * 189.34576 * 21 20 10 41 41 H 1.08996 * 109.47766 * 309.35063 * 21 20 10 42 42 H 1.08997 * 109.46938 * 52.24634 * 22 20 10 43 43 H 1.08996 * 109.46755 * 172.24343 * 22 20 10 44 44 H 1.08994 * 109.47119 * 292.24559 * 22 20 10 45 45 H 0.96699 * 113.99742 * 269.98018 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 -0.0005 5 6 4.2001 0.4274 0.0047 6 6 5.5703 0.6103 -0.0022 7 6 6.1004 1.8872 -0.0017 8 6 5.2626 2.9867 -0.0011 9 6 5.8440 4.3771 -0.0012 10 7 5.6884 4.9730 1.3325 11 6 5.8112 6.4356 1.2732 12 6 5.2547 7.0381 2.5374 13 1 4.7989 6.4035 3.2829 14 6 5.3276 8.3996 2.7424 15 7 5.8824 9.1726 1.8344 16 14 4.6372 9.1466 4.3092 17 1 4.0706 8.0713 5.1622 18 1 5.7229 9.8422 5.0461 19 1 3.5700 10.1201 3.9651 20 6 6.6543 4.4016 2.2804 21 6 8.0588 4.9064 1.9438 22 6 6.2862 4.8281 3.7029 23 6 3.8882 2.8105 -0.0005 24 8 3.0626 3.8912 -0.0004 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.7884 -0.5710 0.0096 31 1 6.2282 -0.2462 -0.0030 32 1 7.1715 2.0259 -0.0022 33 1 6.9027 4.3282 -0.2560 34 1 5.3213 4.9894 -0.7360 35 1 6.8618 6.7082 1.1725 36 1 5.2542 6.8125 0.4153 37 1 5.9333 10.1305 1.9784 38 1 6.6325 3.3141 2.2101 39 1 8.1273 5.9698 2.1733 40 1 8.7930 4.3592 2.5351 41 1 8.2568 4.7500 0.8834 42 1 5.2398 4.5904 3.8942 43 1 6.9159 4.2962 4.4161 44 1 6.4408 5.9016 3.8118 45 1 2.8240 4.2038 0.8830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768762146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = -48.732310 kcal Electronic energy + Delta-G solvation = -24496.035714 eV Core-core repulsion = 21093.455084 eV Total energy + Delta-G solvation = -3402.580631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29978 -38.38031 -37.12043 -36.06939 -32.69002 -32.10881 -31.58783 -29.80686 -28.79164 -27.45525 -26.22124 -24.81401 -23.34705 -22.28932 -22.06870 -20.76551 -18.75558 -17.88530 -17.39881 -16.41571 -16.17951 -16.12760 -15.31917 -15.02764 -14.63617 -14.16434 -14.07660 -13.68582 -13.60108 -13.16928 -13.04064 -12.76270 -12.59221 -12.16182 -11.95178 -11.75640 -11.60908 -11.50143 -11.28101 -11.14759 -11.01949 -10.85980 -10.68916 -10.63976 -10.54093 -10.27682 -10.17899 -10.03431 -9.35512 -8.96540 -8.44021 -8.33473 -7.92158 -7.17982 -5.98323 -3.95062 1.43124 1.55653 3.19252 3.32350 3.40813 3.44341 3.78944 4.45692 4.61242 4.76480 4.76970 4.96740 5.01577 5.06594 5.19718 5.28755 5.36023 5.42776 5.53177 5.60498 5.62119 5.78278 5.85944 5.89780 5.93766 6.10072 6.13507 6.26530 6.35431 6.39975 6.51449 6.56823 6.65163 6.76480 6.77815 6.89289 7.01194 7.30158 7.42006 7.45679 7.52715 7.88168 8.17986 8.23248 8.27034 8.60078 9.09830 9.64753 11.12297 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.004412 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.209180 B = 6345.417351 C = 7222.079728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.096 3.904 5 C -0.206 4.206 6 C -0.096 4.096 7 C -0.140 4.140 8 C -0.051 4.051 9 C 0.090 3.910 10 N -0.524 5.524 11 C 0.186 3.814 12 C -0.499 4.499 13 H 0.075 0.925 14 C 0.053 3.947 15 N -0.899 5.899 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.091 3.909 21 C -0.182 4.182 22 C -0.145 4.145 23 C 0.105 3.895 24 O -0.481 6.481 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.006 0.994 36 H 0.025 0.975 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.026 0.974 44 H 0.097 0.903 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -18.572 -2.892 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.050 3.950 5 C -0.225 4.225 6 C -0.114 4.114 7 C -0.159 4.159 8 C -0.052 4.052 9 C -0.038 4.038 10 N -0.248 5.248 11 C 0.061 3.939 12 C -0.538 4.538 13 H 0.093 0.907 14 C -0.148 4.148 15 N -0.539 5.539 16 Si 0.718 3.282 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.018 4.018 21 C -0.240 4.240 22 C -0.202 4.202 23 C 0.059 3.941 24 O -0.291 6.291 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.024 0.976 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.116 0.884 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.580 -18.373 -3.360 19.018 hybrid contribution 0.568 0.435 0.993 1.224 sum -3.011 -17.938 -2.367 18.342 Atomic orbital electron populations 1.21759 0.92903 1.02509 1.03681 1.22733 0.95807 0.82617 1.00993 1.86160 1.18723 1.28395 1.88797 1.19467 0.82557 0.93800 0.99154 1.21012 0.94257 0.97325 1.09865 1.20809 0.94119 0.97053 0.99460 1.20897 0.99565 0.91665 1.03729 1.20200 0.91722 0.96470 0.96792 1.20977 0.97858 0.90917 0.94047 1.62338 1.49279 1.08796 1.04395 1.19878 0.96274 0.79860 0.97888 1.21444 1.36877 0.91614 1.03837 0.90739 1.24980 0.95865 0.97289 0.96679 1.69971 1.45088 1.04626 1.34234 0.86559 0.78717 0.79315 0.83566 1.19634 1.21292 1.21164 1.21432 0.89297 0.96955 0.94145 1.22437 0.98311 1.03194 1.00083 1.22246 0.99849 1.04664 0.93491 1.17524 0.88507 0.83961 1.04128 1.84740 1.65869 1.44485 1.34019 0.91493 0.90650 0.91464 0.92342 0.92390 0.85814 0.86094 0.86004 0.94383 0.89879 0.97622 0.95710 0.93147 0.92571 0.90878 0.93766 0.93738 0.93022 0.95490 0.88443 0.74770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.54 5.46 37.16 0.20 0.74 16 3 O -0.31 -4.46 9.92 -34.23 -0.34 -4.80 16 4 C 0.10 1.46 6.70 -39.12 -0.26 1.20 16 5 C -0.21 -2.63 9.04 -39.46 -0.36 -2.99 16 6 C -0.10 -1.19 10.04 -39.57 -0.40 -1.59 16 7 C -0.14 -1.97 8.98 -39.58 -0.36 -2.33 16 8 C -0.05 -0.84 4.80 -104.50 -0.50 -1.34 16 9 C 0.09 1.65 4.63 -4.97 -0.02 1.63 16 10 N -0.52 -10.68 4.41 -229.51 -1.01 -11.70 16 11 C 0.19 4.58 4.47 -4.98 -0.02 4.56 16 12 C -0.50 -13.14 6.65 -34.44 -0.23 -13.37 16 13 H 0.07 1.93 5.46 -52.49 -0.29 1.64 16 14 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 15 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.09 1.70 2.82 -67.71 -0.19 1.51 16 21 C -0.18 -3.27 8.26 37.16 0.31 -2.97 16 22 C -0.15 -2.82 7.71 37.16 0.29 -2.54 16 23 C 0.11 1.80 6.69 -39.12 -0.26 1.54 16 24 O -0.48 -8.74 12.63 -34.22 -0.43 -9.17 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 29 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 30 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.54 7.99 -52.48 -0.42 1.12 16 33 H 0.04 0.66 5.96 -51.93 -0.31 0.35 16 34 H 0.08 1.64 7.53 -51.93 -0.39 1.24 16 35 H 0.01 0.16 5.71 -51.93 -0.30 -0.14 16 36 H 0.02 0.67 7.67 -51.93 -0.40 0.27 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 0.99 6.84 -51.93 -0.35 0.64 16 39 H 0.07 1.52 6.56 -51.93 -0.34 1.18 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.76 6.28 -51.93 -0.33 0.44 16 42 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 2.17 5.37 -51.93 -0.28 1.89 16 45 H 0.40 6.55 9.06 45.56 0.41 6.97 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -29.76 353.81 -8.44 -38.19 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.18 Total: 6.82 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.52 Total: -15.45 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.28 Total: -37.09 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.77 Total: -13.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.76 -8.44 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768762146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.539 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds