Wall clock time and date at job start Tue Mar 31 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47450 * 2 1 4 4 C 1.35997 * 117.00101 * 180.02562 * 3 2 1 5 5 C 1.38570 * 120.07276 * 359.72644 * 4 3 2 6 6 C 1.38234 * 119.99756 * 179.70053 * 5 4 3 7 7 C 1.38259 * 120.14616 * 0.59782 * 6 5 4 8 8 C 1.38233 * 120.14568 * 359.67840 * 7 6 5 9 9 C 1.50707 * 119.99902 * 180.02562 * 8 7 6 10 10 N 1.46907 * 109.47086 * 254.32715 * 9 8 7 11 11 C 1.46900 * 110.99878 * 199.16598 * 10 9 8 12 12 C 1.50694 * 109.46841 * 163.39521 * 11 10 9 13 13 H 1.08000 * 120.00265 * 356.48665 * 12 11 10 14 14 C 1.37879 * 119.99984 * 176.48031 * 12 11 10 15 15 N 1.31516 * 119.99903 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00199 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46886 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46815 * 120.00235 * 16 14 12 19 19 H 1.48494 * 109.47657 * 240.00390 * 16 14 12 20 20 C 1.46904 * 110.99911 * 75.21019 * 10 9 8 21 21 C 1.52997 * 109.46704 * 71.27419 * 20 10 9 22 22 C 1.53001 * 109.46794 * 191.27471 * 20 10 9 23 23 C 1.38565 * 120.00439 * 0.02562 * 8 7 6 24 24 O 1.35995 * 120.07622 * 180.02562 * 23 8 7 25 25 H 1.08999 * 109.47209 * 59.99389 * 1 2 3 26 26 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46670 * 299.99891 * 1 2 3 28 28 H 1.08999 * 109.47209 * 120.00611 * 2 1 3 29 29 H 1.09003 * 109.46670 * 240.00109 * 2 1 3 30 30 H 1.07997 * 119.99483 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.92891 * 180.29921 * 6 5 4 32 32 H 1.08007 * 119.92643 * 179.70241 * 7 6 5 33 33 H 1.08998 * 109.47394 * 14.32568 * 9 8 7 34 34 H 1.08996 * 109.47058 * 134.32737 * 9 8 7 35 35 H 1.09001 * 109.46744 * 283.39551 * 11 10 9 36 36 H 1.09003 * 109.47117 * 43.39972 * 11 10 9 37 37 H 0.97002 * 119.99865 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.47085 * 311.27575 * 20 10 9 39 39 H 1.09004 * 109.46803 * 69.35940 * 21 20 10 40 40 H 1.09007 * 109.46886 * 189.34576 * 21 20 10 41 41 H 1.08996 * 109.47766 * 309.35063 * 21 20 10 42 42 H 1.08997 * 109.46938 * 52.24634 * 22 20 10 43 43 H 1.08996 * 109.46755 * 172.24343 * 22 20 10 44 44 H 1.08994 * 109.47119 * 292.24559 * 22 20 10 45 45 H 0.96699 * 113.99742 * 269.98018 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 -0.0005 5 6 4.2001 0.4274 0.0047 6 6 5.5703 0.6103 -0.0022 7 6 6.1004 1.8872 -0.0017 8 6 5.2626 2.9867 -0.0011 9 6 5.8440 4.3771 -0.0012 10 7 5.6884 4.9730 1.3325 11 6 5.8112 6.4356 1.2732 12 6 5.2547 7.0381 2.5374 13 1 4.7989 6.4035 3.2829 14 6 5.3276 8.3996 2.7424 15 7 5.8824 9.1726 1.8344 16 14 4.6372 9.1466 4.3092 17 1 4.0706 8.0713 5.1622 18 1 5.7229 9.8422 5.0461 19 1 3.5700 10.1201 3.9651 20 6 6.6543 4.4016 2.2804 21 6 8.0588 4.9064 1.9438 22 6 6.2862 4.8281 3.7029 23 6 3.8882 2.8105 -0.0005 24 8 3.0626 3.8912 -0.0004 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.7884 -0.5710 0.0096 31 1 6.2282 -0.2462 -0.0030 32 1 7.1715 2.0259 -0.0022 33 1 6.9027 4.3282 -0.2560 34 1 5.3213 4.9894 -0.7360 35 1 6.8618 6.7082 1.1725 36 1 5.2542 6.8125 0.4153 37 1 5.9333 10.1305 1.9784 38 1 6.6325 3.3141 2.2101 39 1 8.1273 5.9698 2.1733 40 1 8.7930 4.3592 2.5351 41 1 8.2568 4.7500 0.8834 42 1 5.2398 4.5904 3.8942 43 1 6.9159 4.2962 4.4161 44 1 6.4408 5.9016 3.8118 45 1 2.8240 4.2038 0.8830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768762146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:05 Heat of formation + Delta-G solvation = -68.130105 kcal Electronic energy + Delta-G solvation = -24496.876866 eV Core-core repulsion = 21093.455084 eV Total energy + Delta-G solvation = -3403.421782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41616 -39.71543 -38.48882 -37.28692 -34.69355 -33.35573 -32.56273 -31.32168 -29.86510 -29.22135 -27.79492 -26.23203 -24.37971 -23.97853 -23.32718 -21.88470 -20.29688 -19.16218 -18.55928 -18.33200 -17.35639 -17.11281 -16.71336 -16.50809 -16.27509 -15.65355 -15.35048 -14.96409 -14.82427 -14.72502 -14.11781 -13.99267 -13.87841 -13.38844 -13.17445 -13.07535 -12.99826 -12.90648 -12.78330 -12.67562 -12.51839 -12.45185 -12.26664 -12.01100 -11.93027 -11.82187 -11.57702 -11.36140 -11.11875 -10.88405 -10.46599 -9.58744 -9.02039 -8.86788 -8.09844 -6.12510 0.30809 0.46089 1.42000 1.44252 1.55780 2.27221 2.45064 2.68004 3.22699 3.41782 3.50434 3.84009 4.01766 4.07905 4.13980 4.23052 4.28893 4.31933 4.38879 4.43599 4.45490 4.56188 4.70324 4.72920 4.89458 4.93111 4.95029 4.99856 5.03789 5.08213 5.18690 5.21061 5.29516 5.32764 5.38224 5.46093 5.60839 5.62770 5.77933 5.82186 5.83910 6.19958 6.41212 6.50834 6.73772 6.96711 7.00079 7.51432 9.01139 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.004412 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.209180 B = 6345.417351 C = 7222.079728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.087 3.913 5 C -0.197 4.197 6 C -0.083 4.083 7 C -0.142 4.142 8 C -0.067 4.067 9 C 0.097 3.903 10 N -0.525 5.525 11 C 0.203 3.797 12 C -0.496 4.496 13 H 0.078 0.922 14 C -0.002 4.002 15 N -0.939 5.939 16 Si 0.955 3.045 17 H -0.260 1.260 18 H -0.283 1.283 19 H -0.286 1.286 20 C 0.090 3.910 21 C -0.173 4.173 22 C -0.140 4.140 23 C 0.070 3.930 24 O -0.500 6.500 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.047 0.953 34 H 0.055 0.945 35 H -0.014 1.014 36 H -0.012 1.012 37 H 0.259 0.741 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -22.221 -1.852 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.041 3.959 5 C -0.216 4.216 6 C -0.101 4.101 7 C -0.161 4.161 8 C -0.068 4.068 9 C -0.031 4.031 10 N -0.249 5.249 11 C 0.077 3.923 12 C -0.535 4.535 13 H 0.096 0.904 14 C -0.198 4.198 15 N -0.581 5.581 16 Si 0.781 3.219 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.213 1.213 20 C -0.019 4.019 21 C -0.231 4.231 22 C -0.197 4.197 23 C 0.024 3.976 24 O -0.311 6.311 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.174 0.826 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.003 0.997 36 H 0.006 0.994 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.230 -22.057 -2.318 22.413 hybrid contribution 0.438 1.411 0.621 1.603 sum -2.792 -20.646 -1.697 20.903 Atomic orbital electron populations 1.21804 0.91852 1.04153 1.02846 1.23088 0.96744 0.80869 1.02373 1.86141 1.18516 1.31296 1.88739 1.19570 0.83410 0.93706 0.99176 1.21416 0.94298 0.97946 1.07918 1.21248 0.94456 0.97436 0.96937 1.21118 1.00116 0.91628 1.03246 1.20041 0.91950 0.95817 0.98994 1.20849 0.98139 0.91937 0.92153 1.62236 1.50391 1.06157 1.06139 1.19491 0.94132 0.82802 0.95860 1.21727 1.35864 0.91819 1.04086 0.90371 1.25787 0.96392 0.97927 0.99725 1.70107 1.46891 1.04806 1.36333 0.85537 0.77897 0.78503 0.79955 1.18434 1.20906 1.21268 1.21528 0.89129 0.97988 0.93222 1.22323 0.98655 1.01180 1.00961 1.22112 1.00046 1.02850 0.94713 1.17862 0.88798 0.84496 1.06423 1.84725 1.66509 1.45639 1.34200 0.92366 0.87707 0.92294 0.90817 0.90891 0.82580 0.82114 0.84318 0.93455 0.92667 0.99681 0.99404 0.93245 0.90247 0.94417 0.90775 0.93227 0.93798 0.92476 0.91661 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.04 0.77 5.46 71.98 0.39 1.16 16 3 O -0.33 -9.38 9.92 -79.66 -0.79 -10.17 16 4 C 0.09 2.55 6.70 22.57 0.15 2.70 16 5 C -0.20 -4.31 9.04 22.35 0.20 -4.11 16 6 C -0.08 -1.69 10.04 22.27 0.22 -1.46 16 7 C -0.14 -3.60 8.98 22.27 0.20 -3.40 16 8 C -0.07 -2.18 4.80 -19.79 -0.09 -2.27 16 9 C 0.10 3.66 4.63 85.56 0.40 4.05 16 10 N -0.53 -22.02 4.41 -880.05 -3.88 -25.90 16 11 C 0.20 10.57 4.47 85.56 0.38 10.96 16 12 C -0.50 -27.03 6.65 25.60 0.17 -26.86 16 13 H 0.08 4.13 5.46 -2.91 -0.02 4.11 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 15 N -0.94 -56.75 13.29 21.45 0.28 -56.46 16 16 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 C 0.09 3.28 2.82 44.91 0.13 3.41 16 21 C -0.17 -6.08 8.26 71.98 0.59 -5.48 16 22 C -0.14 -5.30 7.71 71.98 0.56 -4.75 16 23 C 0.07 2.42 6.69 22.57 0.15 2.57 16 24 O -0.50 -19.31 12.63 -79.63 -1.01 -20.32 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 29 H 0.07 1.06 7.67 -2.39 -0.02 1.04 16 30 H 0.16 2.36 6.30 -2.91 -0.02 2.34 16 31 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.14 3.00 7.99 -2.91 -0.02 2.98 16 33 H 0.05 1.66 5.96 -2.39 -0.01 1.65 16 34 H 0.05 2.34 7.53 -2.39 -0.02 2.33 16 35 H -0.01 -0.81 5.71 -2.39 -0.01 -0.82 16 36 H -0.01 -0.71 7.67 -2.39 -0.02 -0.73 16 37 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.08 2.60 6.84 -2.39 -0.02 2.58 16 39 H 0.04 1.59 6.56 -2.38 -0.02 1.57 16 40 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 1.67 6.28 -2.39 -0.02 1.65 16 42 H 0.04 1.70 7.56 -2.39 -0.02 1.68 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 2.91 5.37 -2.39 -0.01 2.90 16 45 H 0.39 14.15 9.06 -74.06 -0.67 13.48 16 Total: -1.00 -67.66 353.81 1.61 -66.05 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.32 Total: 24.95 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.65 Total: -24.55 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.60 Total: -82.36 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.80 Total: -30.49 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.66 1.61 -66.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768762146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.079 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds