Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47388 * 2 1 4 4 C 1.35895 * 117.00055 * 179.97438 * 3 2 1 5 5 C 1.38793 * 120.03055 * 0.02562 * 4 3 2 6 6 C 1.38151 * 120.05560 * 179.97438 * 5 4 3 7 7 C 1.38201 * 120.11235 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.97278 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46616 * 260.00033 * 8 7 6 10 10 C 1.46909 * 110.99805 * 170.00115 * 9 8 7 11 11 C 1.50701 * 109.47040 * 283.55740 * 10 9 8 12 12 H 1.07998 * 119.99760 * 4.63425 * 11 10 9 13 13 C 1.37875 * 119.99730 * 184.62600 * 11 10 9 14 14 N 1.31507 * 120.00274 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99823 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46719 * 90.00364 * 15 13 11 17 17 H 1.48494 * 109.47077 * 210.00472 * 15 13 11 18 18 H 1.48498 * 109.47271 * 330.00583 * 15 13 11 19 19 C 1.46897 * 110.99830 * 293.95175 * 9 8 7 20 20 C 1.53002 * 109.46917 * 172.12201 * 19 9 8 21 21 C 1.53001 * 109.47302 * 292.11864 * 19 9 8 22 22 C 1.38750 * 120.05082 * 359.97438 * 7 6 5 23 23 O 1.35901 * 120.02194 * 179.97438 * 22 7 6 24 24 C 1.38618 * 120.02889 * 179.72286 * 4 3 2 25 25 H 1.09005 * 109.46873 * 60.00104 * 1 2 3 26 26 H 1.09006 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47545 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.47183 * 239.99540 * 2 1 3 29 29 H 1.09002 * 109.47201 * 120.00304 * 2 1 3 30 30 H 1.08000 * 119.96808 * 359.97373 * 5 4 3 31 31 H 1.08006 * 119.94197 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47491 * 19.99411 * 8 7 6 33 33 H 1.08992 * 109.47022 * 140.00076 * 8 7 6 34 34 H 1.09004 * 109.46719 * 43.55637 * 10 9 8 35 35 H 1.08995 * 109.46855 * 163.55841 * 10 9 8 36 36 H 0.97003 * 120.00381 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.47221 * 52.12464 * 19 9 8 38 38 H 1.08999 * 109.47757 * 60.44273 * 20 19 9 39 39 H 1.08996 * 109.47434 * 180.44505 * 20 19 9 40 40 H 1.09011 * 109.46840 * 300.44302 * 20 19 9 41 41 H 1.08999 * 109.46950 * 60.00122 * 21 19 9 42 42 H 1.09000 * 109.46828 * 180.02562 * 21 19 9 43 43 H 1.08999 * 109.46915 * 299.99929 * 21 19 9 44 44 H 0.96701 * 113.99906 * 90.00729 * 23 22 7 45 45 H 1.08005 * 120.05218 * 0.02606 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5252 0.0005 5 6 4.1996 0.4249 0.0005 6 6 5.5693 0.6053 0.0005 7 6 6.1006 1.8811 0.0000 8 6 7.5952 2.0742 -0.0005 9 7 8.0504 2.3758 1.3633 10 6 9.5164 2.3368 1.4496 11 6 9.9804 0.9032 1.4707 12 1 9.2659 0.1025 1.3493 13 6 11.3172 0.6138 1.6448 14 7 12.1872 1.5888 1.7930 15 14 11.8923 -1.1633 1.6717 16 1 12.2341 -1.5937 0.2922 17 1 13.0918 -1.2822 2.5389 18 1 10.8082 -2.0264 2.2053 19 6 7.5306 3.6726 1.8170 20 6 7.8583 3.8630 3.2993 21 6 8.1784 4.7947 1.0033 22 6 5.2591 2.9842 -0.0010 23 8 5.7822 4.2385 -0.0010 24 6 3.8841 2.8058 -0.0052 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7867 -0.5730 0.0005 31 1 6.2259 -0.2522 0.0001 32 1 8.0792 1.1629 -0.3518 33 1 7.8544 2.9013 -0.6613 34 1 9.9448 2.8448 0.5855 35 1 9.8399 2.8369 2.3624 36 1 13.1276 1.3852 1.9159 37 1 6.4499 3.6999 1.6774 38 1 8.9392 3.8436 3.4380 39 1 7.4657 4.8218 3.6380 40 1 7.4032 3.0591 3.8782 41 1 7.9450 4.6591 -0.0528 42 1 7.7930 5.7570 1.3403 43 1 9.2591 4.7674 1.1430 44 1 5.9342 4.6013 -0.8844 45 1 3.2274 3.6633 -0.0097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768765020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = -49.103985 kcal Electronic energy + Delta-G solvation = -24335.510693 eV Core-core repulsion = 20932.913945 eV Total energy + Delta-G solvation = -3402.596748 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39547 -38.94257 -36.94937 -35.99161 -32.68885 -32.41452 -31.24231 -29.95563 -29.33423 -26.86243 -26.18924 -24.51745 -23.81374 -22.40601 -22.03577 -20.86598 -18.98591 -18.25052 -17.02078 -16.42027 -16.29032 -16.20545 -15.29821 -15.11206 -14.58663 -14.30767 -14.09772 -13.53400 -13.50400 -13.37368 -13.12205 -12.84784 -12.68066 -12.25254 -12.07933 -11.87927 -11.80818 -11.57233 -11.22266 -11.08947 -10.98847 -10.92622 -10.68386 -10.65156 -10.32347 -10.24707 -10.14167 -10.09744 -9.33431 -9.14738 -8.63644 -8.35149 -7.93386 -7.03518 -5.96134 -3.96634 1.36869 1.57188 3.07212 3.33893 3.40439 3.44675 3.76341 4.41560 4.47658 4.69671 4.73965 4.96817 5.02311 5.12917 5.17062 5.25917 5.33879 5.39906 5.52164 5.53298 5.70292 5.77300 5.80018 5.93511 5.99908 6.15469 6.22629 6.31079 6.37203 6.44295 6.50662 6.55546 6.61406 6.65667 6.75793 6.91016 7.03512 7.09078 7.39570 7.42097 7.48783 7.80996 7.90572 8.24477 8.36910 8.68582 9.11330 9.66897 11.14171 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.004227 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.499772 B = 6623.190434 C = 7826.641333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.132 3.868 5 C -0.217 4.217 6 C -0.049 4.049 7 C -0.118 4.118 8 C 0.106 3.894 9 N -0.523 5.523 10 C 0.190 3.810 11 C -0.502 4.502 12 H 0.061 0.939 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.894 3.106 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.074 3.926 20 C -0.142 4.142 21 C -0.166 4.166 22 C 0.146 3.854 23 O -0.480 6.480 24 C -0.183 4.183 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.032 0.968 34 H -0.011 1.011 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.379 0.621 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.179 0.770 -5.693 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.086 3.914 5 C -0.236 4.236 6 C -0.068 4.068 7 C -0.119 4.119 8 C -0.022 4.022 9 N -0.247 5.247 10 C 0.065 3.935 11 C -0.541 4.541 12 H 0.079 0.921 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.722 3.278 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.034 4.034 20 C -0.200 4.200 21 C -0.225 4.225 22 C 0.101 3.899 23 O -0.291 6.291 24 C -0.202 4.202 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.007 0.993 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.236 0.764 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.334 0.516 -4.728 19.910 hybrid contribution 0.906 -0.473 -0.939 1.388 sum -18.428 0.043 -5.667 19.280 Atomic orbital electron populations 1.21771 0.92960 1.02722 1.03406 1.22747 0.95605 0.82199 1.01508 1.86022 1.19286 1.29089 1.89001 1.18639 0.81974 0.93630 0.97111 1.21203 0.94347 0.97741 1.10288 1.20805 0.93844 0.96935 0.95181 1.20356 0.97055 0.92265 1.02254 1.20803 0.88579 1.01110 0.91717 1.62376 1.14022 1.28181 1.20163 1.19789 0.80134 0.97080 0.96470 1.21220 0.92132 0.92436 1.48274 0.92123 1.24971 0.96824 0.97135 0.95723 1.69953 1.02344 1.31264 1.50465 0.86561 0.78207 0.85265 0.77751 1.20868 1.21362 1.19858 1.21829 0.99819 0.87985 0.93816 1.21863 1.02171 0.99697 0.96248 1.22331 1.00822 0.98988 1.00354 1.17902 0.89311 0.84629 0.98097 1.85146 1.83774 1.27793 1.32372 1.20496 0.94539 0.95303 1.09896 0.91647 0.90474 0.91563 0.92089 0.91976 0.85722 0.85073 0.89735 0.95058 0.99346 0.94252 0.93066 0.89276 0.92136 0.93898 0.92797 0.93161 0.93801 0.93032 0.76402 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.49 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.01 10.13 -19.41 -0.20 -4.20 16 4 C 0.13 1.81 6.68 -39.24 -0.26 1.55 16 5 C -0.22 -2.91 9.04 -39.41 -0.36 -3.27 16 6 C -0.05 -0.74 9.66 -39.63 -0.38 -1.13 16 7 C -0.12 -1.94 5.18 -104.45 -0.54 -2.48 16 8 C 0.11 2.02 4.68 -4.97 -0.02 1.99 16 9 N -0.52 -11.38 4.38 -229.51 -1.00 -12.38 16 10 C 0.19 4.91 3.40 -4.97 -0.02 4.90 16 11 C -0.50 -14.07 8.63 -34.44 -0.30 -14.37 16 12 H 0.06 1.69 7.70 -52.49 -0.40 1.28 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.07 1.42 2.35 -67.71 -0.16 1.26 16 20 C -0.14 -2.71 9.12 37.16 0.34 -2.38 16 21 C -0.17 -2.94 7.45 37.16 0.28 -2.67 16 22 C 0.15 2.15 5.44 -39.24 -0.21 1.94 16 23 O -0.48 -6.43 7.72 -19.43 -0.15 -6.58 16 24 C -0.18 -2.56 9.93 -39.29 -0.39 -2.95 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 29 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.12 1.37 6.29 -52.49 -0.33 1.04 16 31 H 0.13 1.93 8.03 -52.48 -0.42 1.51 16 32 H 0.08 1.73 7.24 -51.93 -0.38 1.35 16 33 H 0.03 0.58 6.04 -51.93 -0.31 0.26 16 34 H -0.01 -0.31 7.35 -51.93 -0.38 -0.69 16 35 H 0.04 1.10 5.75 -51.93 -0.30 0.80 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 1.68 4.25 -51.93 -0.22 1.46 16 38 H 0.06 1.26 6.18 -51.93 -0.32 0.94 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.05 0.82 5.07 -51.93 -0.26 0.56 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 1.03 6.82 -51.93 -0.35 0.68 16 44 H 0.38 3.53 8.84 45.56 0.40 3.94 16 45 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -31.60 349.23 -8.08 -39.68 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.17 Total: 3.74 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.54 Total: -16.11 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.27 Total: -38.47 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.35 Total: -10.78 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.60 -8.08 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768765020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.420 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds