Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47388 * 2 1 4 4 C 1.35895 * 117.00055 * 179.97438 * 3 2 1 5 5 C 1.38793 * 120.03055 * 0.02562 * 4 3 2 6 6 C 1.38151 * 120.05560 * 179.97438 * 5 4 3 7 7 C 1.38201 * 120.11235 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.97278 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46616 * 260.00033 * 8 7 6 10 10 C 1.46909 * 110.99805 * 170.00115 * 9 8 7 11 11 C 1.50701 * 109.47040 * 283.55740 * 10 9 8 12 12 H 1.07998 * 119.99760 * 4.63425 * 11 10 9 13 13 C 1.37875 * 119.99730 * 184.62600 * 11 10 9 14 14 N 1.31507 * 120.00274 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99823 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46719 * 90.00364 * 15 13 11 17 17 H 1.48494 * 109.47077 * 210.00472 * 15 13 11 18 18 H 1.48498 * 109.47271 * 330.00583 * 15 13 11 19 19 C 1.46897 * 110.99830 * 293.95175 * 9 8 7 20 20 C 1.53002 * 109.46917 * 172.12201 * 19 9 8 21 21 C 1.53001 * 109.47302 * 292.11864 * 19 9 8 22 22 C 1.38750 * 120.05082 * 359.97438 * 7 6 5 23 23 O 1.35901 * 120.02194 * 179.97438 * 22 7 6 24 24 C 1.38618 * 120.02889 * 179.72286 * 4 3 2 25 25 H 1.09005 * 109.46873 * 60.00104 * 1 2 3 26 26 H 1.09006 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47545 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.47183 * 239.99540 * 2 1 3 29 29 H 1.09002 * 109.47201 * 120.00304 * 2 1 3 30 30 H 1.08000 * 119.96808 * 359.97373 * 5 4 3 31 31 H 1.08006 * 119.94197 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47491 * 19.99411 * 8 7 6 33 33 H 1.08992 * 109.47022 * 140.00076 * 8 7 6 34 34 H 1.09004 * 109.46719 * 43.55637 * 10 9 8 35 35 H 1.08995 * 109.46855 * 163.55841 * 10 9 8 36 36 H 0.97003 * 120.00381 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.47221 * 52.12464 * 19 9 8 38 38 H 1.08999 * 109.47757 * 60.44273 * 20 19 9 39 39 H 1.08996 * 109.47434 * 180.44505 * 20 19 9 40 40 H 1.09011 * 109.46840 * 300.44302 * 20 19 9 41 41 H 1.08999 * 109.46950 * 60.00122 * 21 19 9 42 42 H 1.09000 * 109.46828 * 180.02562 * 21 19 9 43 43 H 1.08999 * 109.46915 * 299.99929 * 21 19 9 44 44 H 0.96701 * 113.99906 * 90.00729 * 23 22 7 45 45 H 1.08005 * 120.05218 * 0.02606 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5252 0.0005 5 6 4.1996 0.4249 0.0005 6 6 5.5693 0.6053 0.0005 7 6 6.1006 1.8811 0.0000 8 6 7.5952 2.0742 -0.0005 9 7 8.0504 2.3758 1.3633 10 6 9.5164 2.3368 1.4496 11 6 9.9804 0.9032 1.4707 12 1 9.2659 0.1025 1.3493 13 6 11.3172 0.6138 1.6448 14 7 12.1872 1.5888 1.7930 15 14 11.8923 -1.1633 1.6717 16 1 12.2341 -1.5937 0.2922 17 1 13.0918 -1.2822 2.5389 18 1 10.8082 -2.0264 2.2053 19 6 7.5306 3.6726 1.8170 20 6 7.8583 3.8630 3.2993 21 6 8.1784 4.7947 1.0033 22 6 5.2591 2.9842 -0.0010 23 8 5.7822 4.2385 -0.0010 24 6 3.8841 2.8058 -0.0052 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7867 -0.5730 0.0005 31 1 6.2259 -0.2522 0.0001 32 1 8.0792 1.1629 -0.3518 33 1 7.8544 2.9013 -0.6613 34 1 9.9448 2.8448 0.5855 35 1 9.8399 2.8369 2.3624 36 1 13.1276 1.3852 1.9159 37 1 6.4499 3.6999 1.6774 38 1 8.9392 3.8436 3.4380 39 1 7.4657 4.8218 3.6380 40 1 7.4032 3.0591 3.8782 41 1 7.9450 4.6591 -0.0528 42 1 7.7930 5.7570 1.3403 43 1 9.2591 4.7674 1.1430 44 1 5.9342 4.6013 -0.8844 45 1 3.2274 3.6633 -0.0097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768765020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = -70.057638 kcal Electronic energy + Delta-G solvation = -24336.419311 eV Core-core repulsion = 20932.913945 eV Total energy + Delta-G solvation = -3403.505366 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50438 -40.06669 -38.43663 -37.04764 -34.81982 -33.45650 -32.42650 -31.09840 -30.77649 -28.53935 -27.84081 -25.94484 -24.82127 -24.10410 -23.23551 -21.97488 -20.30222 -19.56844 -18.64198 -17.94385 -17.39744 -17.00887 -16.71100 -16.64886 -16.25782 -15.63032 -15.43278 -14.97927 -14.85694 -14.60784 -14.19464 -14.10293 -13.84374 -13.78316 -13.35843 -13.19961 -12.95304 -12.90093 -12.81998 -12.57807 -12.52672 -12.35757 -12.10361 -12.07475 -11.89611 -11.87779 -11.53385 -11.31198 -11.20969 -11.02559 -10.53566 -9.72473 -9.09924 -8.75798 -8.14096 -6.23787 0.28627 0.42701 1.41002 1.42660 1.53996 2.20095 2.42784 2.64418 3.16711 3.38284 3.58112 3.83920 3.99919 4.07645 4.09216 4.17227 4.25157 4.36717 4.40868 4.43360 4.47076 4.70623 4.74570 4.77011 4.85705 4.93704 4.97374 4.98855 5.04706 5.06984 5.15515 5.20391 5.22772 5.29408 5.39145 5.43630 5.46348 5.57882 5.66568 5.72775 5.77548 6.17856 6.44878 6.55205 6.79871 6.87111 6.93361 7.45343 8.95540 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.004227 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.499772 B = 6623.190434 C = 7826.641333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.136 3.864 5 C -0.214 4.214 6 C -0.058 4.058 7 C -0.141 4.141 8 C 0.113 3.887 9 N -0.533 5.533 10 C 0.211 3.789 11 C -0.518 4.518 12 H 0.058 0.942 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.073 3.927 20 C -0.140 4.140 21 C -0.156 4.156 22 C 0.153 3.847 23 O -0.488 6.488 24 C -0.188 4.188 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.034 0.966 34 H -0.039 1.039 35 H 0.013 0.987 36 H 0.262 0.738 37 H 0.103 0.897 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.019 0.981 44 H 0.399 0.601 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.488 -0.032 -6.115 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.243 6.243 4 C 0.090 3.910 5 C -0.233 4.233 6 C -0.077 4.077 7 C -0.143 4.143 8 C -0.014 4.014 9 N -0.257 5.257 10 C 0.085 3.915 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.577 5.577 15 Si 0.790 3.210 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.035 4.035 20 C -0.197 4.197 21 C -0.214 4.214 22 C 0.108 3.892 23 O -0.301 6.301 24 C -0.207 4.207 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.052 0.948 34 H -0.021 1.021 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.259 0.741 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.673 -0.278 -5.171 22.283 hybrid contribution 1.497 -0.195 -0.830 1.723 sum -20.176 -0.473 -6.001 21.055 Atomic orbital electron populations 1.21801 0.91307 1.04168 1.03230 1.23086 0.96976 0.80749 1.02330 1.86035 1.18351 1.31342 1.88578 1.18777 0.82736 0.93621 0.95887 1.21371 0.93391 0.99029 1.09479 1.20875 0.94843 0.96466 0.95467 1.20151 0.95231 0.93612 1.05278 1.20651 0.90635 1.00017 0.90143 1.62301 1.11156 1.30081 1.22193 1.19364 0.82854 0.95468 0.93834 1.21541 0.92540 0.93380 1.48200 0.92337 1.25861 0.96907 1.01723 0.95144 1.70087 1.02700 1.33610 1.51286 0.85455 0.77711 0.79723 0.78161 1.19790 1.20964 1.19047 1.21922 1.00434 0.87242 0.93870 1.21849 1.00338 1.01085 0.96433 1.22218 0.98564 0.99634 1.01025 1.17832 0.89469 0.84477 0.97447 1.85031 1.83733 1.27162 1.34203 1.20641 0.94239 0.96092 1.09752 0.91636 0.88223 0.91929 0.90919 0.91448 0.83308 0.85371 0.91989 0.94758 1.02136 0.96944 0.92894 0.87940 0.94878 0.90933 0.93494 0.91907 0.91408 0.96200 0.74101 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.04 0.66 5.46 71.98 0.39 1.05 16 3 O -0.33 -7.42 10.13 -92.37 -0.94 -8.35 16 4 C 0.14 3.42 6.68 22.49 0.15 3.57 16 5 C -0.21 -5.32 9.04 22.38 0.20 -5.12 16 6 C -0.06 -1.72 9.66 22.24 0.21 -1.50 16 7 C -0.14 -4.57 5.18 -19.75 -0.10 -4.67 16 8 C 0.11 4.40 4.68 85.56 0.40 4.80 16 9 N -0.53 -23.77 4.38 -880.05 -3.85 -27.62 16 10 C 0.21 11.41 3.40 85.56 0.29 11.70 16 11 C -0.52 -29.94 8.63 25.60 0.22 -29.72 16 12 H 0.06 3.33 7.70 -2.91 -0.02 3.30 16 13 C 0.00 0.06 5.46 84.66 0.46 0.52 16 14 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 15 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C 0.07 2.80 2.35 44.92 0.11 2.91 16 20 C -0.14 -5.35 9.12 71.98 0.66 -4.69 16 21 C -0.16 -5.48 7.45 71.98 0.54 -4.94 16 22 C 0.15 4.28 5.44 22.49 0.12 4.40 16 23 O -0.49 -12.10 7.72 -92.43 -0.71 -12.81 16 24 C -0.19 -4.85 9.93 22.46 0.22 -4.63 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.10 0.65 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.96 7.66 -2.38 -0.02 0.94 16 29 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 30 H 0.15 2.87 6.29 -2.91 -0.02 2.86 16 31 H 0.13 3.78 8.03 -2.91 -0.02 3.76 16 32 H 0.06 2.64 7.24 -2.39 -0.02 2.62 16 33 H 0.03 1.29 6.04 -2.39 -0.01 1.27 16 34 H -0.04 -2.28 7.35 -2.39 -0.02 -2.30 16 35 H 0.01 0.74 5.75 -2.39 -0.01 0.73 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.10 3.73 4.25 -2.39 -0.01 3.72 16 38 H 0.03 1.43 6.18 -2.39 -0.01 1.41 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.06 2.01 5.07 -2.39 -0.01 2.00 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.02 0.80 6.82 -2.39 -0.02 0.78 16 44 H 0.40 6.55 8.84 -74.06 -0.65 5.89 16 45 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.13 349.23 1.76 -67.36 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.34 Total: 18.61 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.62 Total: -27.20 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.57 Total: -84.63 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.65 Total: -21.17 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.13 1.76 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768765020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.696 kcal (2) G-P(sol) polarization free energy of solvation -69.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds