Wall clock time and date at job start Tue Mar 31 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42890 * 109.47420 * 2 1 4 4 C 1.42905 * 113.99816 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47160 * 74.99772 * 4 3 2 6 6 C 1.35899 * 116.99883 * 74.99967 * 5 4 3 7 7 C 1.38733 * 120.05512 * 179.97438 * 6 5 4 8 8 C 1.38148 * 119.94226 * 180.02562 * 7 6 5 9 9 C 1.38270 * 120.05515 * 0.02693 * 8 7 6 10 10 C 1.50707 * 119.93910 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46656 * 90.00160 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47248 * 119.99830 * 19 17 15 22 22 H 1.48497 * 109.47294 * 240.00183 * 19 17 15 23 23 C 1.38264 * 120.11323 * 0.24765 * 9 8 7 24 24 C 1.38141 * 120.05663 * 359.45486 * 23 9 8 25 25 H 1.09006 * 109.47284 * 300.00779 * 1 2 3 26 26 H 1.09006 * 109.47109 * 59.99853 * 1 2 3 27 27 H 1.09004 * 109.48036 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46826 * 239.99161 * 2 1 3 29 29 H 1.09004 * 109.46592 * 120.00100 * 2 1 3 30 30 H 1.08999 * 109.47253 * 314.99718 * 4 3 2 31 31 H 1.09005 * 109.46902 * 194.99889 * 4 3 2 32 32 H 1.07996 * 120.02849 * 0.02562 * 7 6 5 33 33 H 1.08000 * 119.97048 * 179.97438 * 8 7 6 34 34 H 1.08990 * 109.47142 * 330.00145 * 10 9 8 35 35 H 1.09004 * 109.46726 * 210.00043 * 10 9 8 36 36 H 1.00896 * 111.00219 * 303.95295 * 11 10 9 37 37 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 38 38 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 39 39 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 40 40 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 41 41 H 1.08993 * 109.47277 * 299.99937 * 14 13 12 42 42 H 1.09000 * 109.47041 * 60.00238 * 14 13 12 43 43 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 44 44 H 1.07997 * 119.97123 * 179.70535 * 23 9 8 45 45 H 1.07995 * 120.03365 * 180.24888 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 8 3.9339 1.1496 -1.3005 6 6 3.7696 2.0915 -2.2663 7 6 4.2344 1.8567 -3.5522 8 6 4.0666 2.8160 -4.5319 9 6 3.4367 4.0097 -4.2317 10 6 3.2556 5.0547 -5.3024 11 7 1.9758 4.8352 -5.9893 12 6 1.7645 5.8380 -7.0418 13 6 0.4250 5.5769 -7.7335 14 6 0.2046 6.6217 -8.8292 15 6 -1.1150 6.3649 -9.5101 16 1 -1.7348 5.5394 -9.1927 17 6 -1.5312 7.1839 -10.5382 18 7 -0.7764 8.1889 -10.9251 19 14 -3.1667 6.8652 -11.3826 20 1 -3.8195 5.6821 -10.7667 21 1 -4.0443 8.0529 -11.2262 22 1 -2.9362 6.6068 -12.8267 23 6 2.9777 4.2485 -2.9495 24 6 3.1375 3.2900 -1.9677 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8502 0.7643 0.7276 31 1 3.7147 2.4782 0.2665 32 1 4.7268 0.9247 -3.7870 33 1 4.4286 2.6338 -5.5330 34 1 4.0712 4.9828 -6.0218 35 1 3.2586 6.0453 -4.8474 36 1 1.9225 3.9001 -6.3644 37 1 1.7570 6.8338 -6.5986 38 1 2.5697 5.7720 -7.7735 39 1 0.4329 4.5811 -8.1766 40 1 -0.3806 5.6426 -7.0020 41 1 0.1965 7.6172 -8.3857 42 1 1.0101 6.5564 -9.5608 43 1 -1.0693 8.7653 -11.6481 44 1 2.4902 5.1836 -2.7164 45 1 2.7752 3.4753 -0.9673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782960630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:04 Heat of formation + Delta-G solvation = -83.091308 kcal Electronic energy + Delta-G solvation = -22223.716593 eV Core-core repulsion = 18819.646045 eV Total energy + Delta-G solvation = -3404.070549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53143 -38.71426 -37.18235 -35.96117 -33.53633 -31.86849 -31.59254 -31.04913 -29.84591 -26.92792 -26.07445 -24.30150 -23.17986 -22.77302 -22.16451 -21.14211 -20.02392 -18.67113 -17.39900 -17.04221 -16.36563 -15.92451 -15.64011 -15.34309 -15.09459 -14.61603 -14.26101 -14.22972 -14.09896 -13.85064 -13.55063 -13.40231 -12.80992 -12.56322 -12.31020 -12.23133 -12.10850 -11.79656 -11.50629 -11.46534 -11.33622 -11.22695 -10.91502 -10.81416 -10.53976 -10.43935 -10.37142 -9.65561 -9.32178 -9.07362 -9.01470 -8.33492 -8.31190 -8.05837 -5.96357 -3.98119 1.25816 1.31200 2.91649 3.18352 3.33788 3.40999 3.45910 3.65851 4.48096 4.48402 4.60711 4.63335 4.68612 4.73960 4.83536 4.87754 4.95728 5.00496 5.19557 5.29593 5.31211 5.39489 5.41927 5.55807 5.63274 5.70830 5.77344 5.85792 5.92692 5.98972 6.14549 6.26485 6.36304 6.47480 6.60563 6.66262 6.76384 6.80720 7.18160 7.19099 7.37744 7.66981 7.73022 7.87940 8.04518 8.48078 9.09408 9.65735 11.15163 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002222 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.514372 B =12600.826436 C =13595.928785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.392 6.392 4 C 0.213 3.787 5 O -0.334 6.334 6 C 0.122 3.878 7 C -0.151 4.151 8 C -0.079 4.079 9 C -0.109 4.109 10 C 0.099 3.901 11 N -0.687 5.687 12 C 0.059 3.941 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.060 4.060 24 C -0.194 4.194 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.338 0.662 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.126 0.874 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.753 -15.328 23.839 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.312 6.312 4 C 0.100 3.900 5 O -0.251 6.251 6 C 0.077 3.923 7 C -0.170 4.170 8 C -0.098 4.098 9 C -0.110 4.110 10 C -0.030 4.030 11 N -0.317 5.317 12 C -0.070 4.070 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.079 4.079 24 C -0.213 4.213 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.352 -14.856 24.172 30.559 hybrid contribution -0.198 -0.468 -1.068 1.183 sum 11.154 -15.324 23.103 29.883 Atomic orbital electron populations 1.21764 0.93410 1.02454 1.03389 1.22556 0.95899 0.83051 1.00489 1.88082 1.21530 1.27967 1.93597 1.24119 0.80495 1.02643 0.82732 1.86202 1.75448 1.43126 1.20288 1.18913 0.96467 0.88067 0.88808 1.20366 1.05109 1.00976 0.90521 1.20871 0.97703 0.92584 0.98615 1.19802 1.00237 0.95935 0.95021 1.20836 0.91119 0.97164 0.93855 1.60606 1.31886 1.07233 1.32010 1.22152 0.98470 0.95132 0.91226 1.21621 0.94169 1.00337 0.98355 1.19074 0.96647 0.93539 0.92367 1.21304 1.04328 1.13137 1.16760 0.92617 1.25038 0.97258 0.95219 0.97108 1.69976 1.37419 1.17331 1.28932 0.86539 0.84017 0.78163 0.79311 1.19724 1.21025 1.21077 1.20858 0.96365 0.98742 0.91925 1.21263 1.04726 0.94302 1.01004 0.91857 0.91510 0.90956 0.92562 0.93181 0.87980 0.88057 0.85543 0.85606 0.94708 0.90404 0.84427 0.91436 0.95748 0.93672 0.92552 0.96564 0.96802 0.93122 0.85559 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.42 6.53 37.16 0.24 0.66 16 3 O -0.39 -3.60 9.83 -59.04 -0.58 -4.19 16 4 C 0.21 1.57 6.39 101.05 0.65 2.21 16 5 O -0.33 -3.39 10.19 -43.24 -0.44 -3.83 16 6 C 0.12 1.37 6.63 -39.21 -0.26 1.11 16 7 C -0.15 -1.66 9.99 -39.43 -0.39 -2.06 16 8 C -0.08 -0.88 9.69 -39.60 -0.38 -1.26 16 9 C -0.11 -1.32 5.39 -104.60 -0.56 -1.88 16 10 C 0.10 1.27 5.81 -4.97 -0.03 1.24 16 11 N -0.69 -10.48 6.49 -115.05 -0.75 -11.22 16 12 C 0.06 1.04 5.69 -3.82 -0.02 1.01 16 13 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.06 -0.71 9.69 -39.61 -0.38 -1.09 16 24 C -0.19 -2.16 8.78 -39.43 -0.35 -2.50 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 8.03 -51.93 -0.42 0.04 16 29 H 0.05 0.28 8.11 -51.93 -0.42 -0.14 16 30 H 0.10 0.47 8.01 -51.93 -0.42 0.05 16 31 H 0.10 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.34 4.97 8.72 -39.29 -0.34 4.62 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.13 1.27 5.86 -52.49 -0.31 0.96 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -32.34 375.60 -9.91 -42.25 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.71 Total: 0.03 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.81 Total: -19.05 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.01 Total: -37.91 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.02 Total: -8.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.34 -9.91 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782960630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.844 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds