Wall clock time and date at job start Tue Mar 31 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46764 * 2 1 4 4 C 1.42900 * 113.99429 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47182 * 75.00440 * 4 3 2 6 6 C 1.35897 * 117.00302 * 74.99671 * 5 4 3 7 7 C 1.38728 * 120.05545 * 180.02562 * 6 5 4 8 8 C 1.38148 * 119.94234 * 180.29864 * 7 6 5 9 9 C 1.38266 * 120.05606 * 359.42017 * 8 7 6 10 10 C 1.50702 * 119.94595 * 180.30184 * 9 8 7 11 11 N 1.46895 * 109.46843 * 270.29749 * 10 9 8 12 12 C 1.46901 * 111.00238 * 293.95420 * 11 10 9 13 13 C 1.52995 * 109.47205 * 164.23469 * 12 11 10 14 14 C 1.46901 * 110.99806 * 170.00123 * 11 10 9 15 15 C 1.50703 * 109.47068 * 284.30553 * 14 11 10 16 16 H 1.08004 * 119.99655 * 4.65146 * 15 14 11 17 17 C 1.37870 * 120.00232 * 184.64230 * 15 14 11 18 18 N 1.31518 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00491 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46675 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47086 * 120.00129 * 19 17 15 22 22 H 1.48498 * 109.47335 * 240.00801 * 19 17 15 23 23 C 1.38274 * 120.10974 * 0.59585 * 9 8 7 24 24 C 1.38140 * 120.05464 * 359.68502 * 23 9 8 25 25 H 1.09001 * 109.46800 * 60.00234 * 1 2 3 26 26 H 1.09006 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47568 * 299.99872 * 1 2 3 28 28 H 1.08997 * 109.47047 * 240.00153 * 2 1 3 29 29 H 1.09001 * 109.46800 * 119.99766 * 2 1 3 30 30 H 1.09002 * 109.47600 * 314.99910 * 4 3 2 31 31 H 1.09003 * 109.46701 * 194.99992 * 4 3 2 32 32 H 1.08003 * 120.03311 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.96794 * 179.69470 * 8 7 6 34 34 H 1.08994 * 109.46905 * 30.29901 * 10 9 8 35 35 H 1.09001 * 109.46883 * 150.29803 * 10 9 8 36 36 H 1.09005 * 109.47163 * 284.23386 * 12 11 10 37 37 H 1.08995 * 109.47275 * 44.23120 * 12 11 10 38 38 H 1.08996 * 109.47172 * 299.63355 * 13 12 11 39 39 H 1.09000 * 109.47496 * 59.63817 * 13 12 11 40 40 H 1.09007 * 109.47346 * 179.63545 * 13 12 11 41 41 H 1.08996 * 109.47282 * 44.30790 * 14 11 10 42 42 H 1.09002 * 109.47102 * 164.30862 * 14 11 10 43 43 H 0.96999 * 120.00205 * 179.97438 * 18 17 15 44 44 H 1.07994 * 119.96982 * 179.69927 * 23 9 8 45 45 H 1.07995 * 120.03098 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 8 3.9338 1.1500 -1.3006 6 6 3.7695 2.0919 -2.2663 7 6 4.2333 1.8567 -3.5524 8 6 4.0705 2.8184 -4.5307 9 6 3.4353 4.0096 -4.2319 10 6 3.2531 5.0542 -5.3028 11 7 4.4150 5.9528 -5.3130 12 6 4.4872 6.7343 -4.0712 13 6 5.8810 7.3508 -3.9369 14 6 4.3891 6.8335 -6.4885 15 6 4.7961 6.0518 -7.7109 16 1 4.9759 4.9894 -7.6374 17 6 4.9387 6.6928 -8.9232 18 7 4.7201 7.9866 -9.0127 19 14 5.4425 5.7238 -10.4387 20 1 5.6261 4.2959 -10.0746 21 1 4.3839 5.8381 -11.4738 22 1 6.7174 6.2669 -10.9723 23 6 2.9724 4.2466 -2.9507 24 6 3.1379 3.2905 -1.9675 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8502 0.7645 0.7275 31 1 3.7145 2.4784 0.2665 32 1 4.7251 0.9244 -3.7876 33 1 4.4358 2.6377 -5.5308 34 1 3.1618 4.5672 -6.2736 35 1 2.3503 5.6299 -5.0988 36 1 3.7400 7.5275 -4.0971 37 1 4.2950 6.0817 -3.2196 38 1 6.6276 6.5575 -3.9045 39 1 6.0758 7.9984 -4.7918 40 1 5.9325 7.9360 -3.0187 41 1 3.3815 7.2255 -6.6266 42 1 5.0832 7.6604 -6.3383 43 1 4.8208 8.4377 -9.8655 44 1 2.4809 5.1798 -2.7187 45 1 2.7766 3.4762 -0.9668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783400858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:03 Heat of formation + Delta-G solvation = -64.489708 kcal Electronic energy + Delta-G solvation = -23449.619291 eV Core-core repulsion = 20046.355368 eV Total energy + Delta-G solvation = -3403.263923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28455 -38.57705 -37.18626 -36.00988 -32.61228 -31.67521 -31.11646 -30.75233 -29.44642 -26.98553 -26.05099 -24.33882 -23.09277 -22.76480 -22.16383 -21.01671 -19.60264 -18.40769 -17.23164 -16.79439 -16.40002 -15.47872 -15.44154 -15.22987 -14.83123 -14.26778 -14.09646 -14.03511 -13.71567 -13.35025 -13.33076 -13.10943 -12.69280 -12.45025 -12.22022 -12.03433 -11.84408 -11.55633 -11.43725 -11.28997 -11.11067 -10.89902 -10.85751 -10.67857 -10.60400 -10.43857 -10.22318 -10.20266 -9.62078 -9.18572 -8.70084 -8.39013 -7.90580 -7.17779 -5.98923 -3.99629 1.61420 1.66706 3.15359 3.32990 3.33247 3.40727 3.45549 4.01779 4.46428 4.63359 4.76021 4.81595 4.92592 5.03386 5.07399 5.12349 5.17300 5.35533 5.37442 5.38282 5.55874 5.61671 5.68023 5.76841 5.80256 5.87475 5.95767 6.12082 6.16675 6.31731 6.37058 6.43277 6.55134 6.61654 6.65584 6.66316 6.86814 6.99676 7.05112 7.30478 7.38443 7.48871 7.86759 8.16969 8.26462 8.59531 9.08260 9.64302 11.11760 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.003123 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.452045 B = 8962.189242 C = 9484.500789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.393 6.393 4 C 0.214 3.786 5 O -0.335 6.335 6 C 0.113 3.887 7 C -0.151 4.151 8 C -0.062 4.062 9 C -0.091 4.091 10 C 0.100 3.900 11 N -0.529 5.529 12 C 0.046 3.954 13 C -0.142 4.142 14 C 0.190 3.810 15 C -0.501 4.501 16 H 0.063 0.937 17 C 0.053 3.947 18 N -0.900 5.900 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.082 4.082 24 C -0.196 4.196 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.043 0.957 41 H -0.012 1.012 42 H 0.038 0.962 43 H 0.260 0.740 44 H 0.119 0.881 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -13.242 18.979 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.313 6.313 4 C 0.101 3.899 5 O -0.251 6.251 6 C 0.069 3.931 7 C -0.170 4.170 8 C -0.081 4.081 9 C -0.092 4.092 10 C -0.027 4.027 11 N -0.254 5.254 12 C -0.083 4.083 13 C -0.200 4.200 14 C 0.065 3.935 15 C -0.540 4.540 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.101 4.101 24 C -0.214 4.214 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.006 0.994 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.137 0.863 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.522 -13.397 18.799 23.523 hybrid contribution -0.356 0.110 -0.661 0.759 sum -4.878 -13.287 18.138 23.008 Atomic orbital electron populations 1.21754 0.93627 1.02307 1.03218 1.22534 0.95705 0.83298 1.00492 1.88069 1.21846 1.27724 1.93682 1.24077 0.80212 1.02559 0.83059 1.86185 1.75587 1.43257 1.20113 1.18851 0.97402 0.88142 0.88708 1.20410 1.04985 1.01059 0.90509 1.20918 0.95893 0.92167 0.99084 1.20005 0.98601 0.95747 0.94862 1.20934 0.91916 0.92777 0.97120 1.62178 1.39107 1.21395 1.02702 1.22092 0.96588 0.95641 0.93970 1.21728 0.97265 1.00479 1.00493 1.19813 0.95625 0.91853 0.86226 1.21210 1.45167 0.95363 0.92222 0.91867 1.24988 0.95786 0.94901 0.99046 1.69967 1.50214 1.08463 1.25402 0.86473 0.78061 0.80272 0.82810 1.19638 1.21203 1.21098 1.20862 0.98697 0.98108 0.92396 1.21128 1.05305 0.94471 1.00528 0.91658 0.91063 0.91933 0.92553 0.93259 0.88190 0.88121 0.85772 0.85017 0.89243 0.95492 0.96289 0.91881 0.92491 0.92095 0.93825 0.99416 0.94436 0.93060 0.86306 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.47 6.54 37.16 0.24 0.71 16 3 O -0.39 -4.12 9.83 -59.04 -0.58 -4.70 16 4 C 0.21 1.98 6.39 101.05 0.65 2.63 16 5 O -0.34 -4.18 10.19 -43.23 -0.44 -4.62 16 6 C 0.11 1.60 6.63 -39.22 -0.26 1.34 16 7 C -0.15 -2.21 9.99 -39.43 -0.39 -2.60 16 8 C -0.06 -1.00 9.69 -39.60 -0.38 -1.38 16 9 C -0.09 -1.54 4.94 -104.60 -0.52 -2.06 16 10 C 0.10 1.95 4.94 -4.98 -0.02 1.92 16 11 N -0.53 -11.47 4.37 -237.52 -1.04 -12.51 16 12 C 0.05 0.85 5.52 -3.83 -0.02 0.83 16 13 C -0.14 -2.53 9.98 37.15 0.37 -2.16 16 14 C 0.19 4.93 4.59 -4.97 -0.02 4.90 16 15 C -0.50 -14.01 8.61 -34.44 -0.30 -14.31 16 16 H 0.06 1.75 7.66 -52.48 -0.40 1.35 16 17 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 18 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.08 -1.23 7.84 -39.60 -0.31 -1.54 16 24 C -0.20 -2.70 8.78 -39.43 -0.35 -3.05 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 29 H 0.05 0.32 8.11 -51.93 -0.42 -0.10 16 30 H 0.10 0.64 8.01 -51.93 -0.42 0.22 16 31 H 0.10 0.83 6.70 -51.93 -0.35 0.48 16 32 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.09 1.86 7.27 -51.93 -0.38 1.48 16 35 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 37 H 0.06 1.07 5.13 -51.93 -0.27 0.80 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 40 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 41 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 42 H 0.04 1.04 6.23 -51.93 -0.32 0.72 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.12 1.65 7.73 -52.49 -0.41 1.25 16 45 H 0.13 1.51 5.86 -52.49 -0.31 1.20 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.10 365.22 -9.24 -40.35 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.37 Total: -0.56 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.03 Total: -14.07 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.30 Total: -38.59 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.02 Total: -9.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.10 -9.24 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783400858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds