Wall clock time and date at job start Tue Mar 31 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47725 * 2 1 4 4 C 1.42893 * 114.00413 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.47082 * 74.99892 * 4 3 2 6 6 C 1.35892 * 116.99751 * 75.00176 * 5 4 3 7 7 C 1.38736 * 120.05364 * 180.02562 * 6 5 4 8 8 C 1.38145 * 119.94336 * 180.02562 * 7 6 5 9 9 C 1.38264 * 120.05726 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.94504 * 179.97438 * 9 8 7 11 11 N 1.46895 * 109.47089 * 90.00169 * 10 9 8 12 12 C 1.46904 * 110.99841 * 66.04861 * 11 10 9 13 13 C 1.46899 * 111.00230 * 190.00004 * 11 10 9 14 14 H 1.09002 * 109.47043 * 55.00375 * 13 11 10 15 15 C 1.52997 * 109.47254 * 295.00304 * 13 11 10 16 16 C 1.50699 * 109.47244 * 175.00202 * 13 11 10 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47256 * 90.00491 * 20 18 16 22 22 H 1.48506 * 109.46930 * 210.00332 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00193 * 20 18 16 24 24 C 1.38261 * 120.10998 * 0.26069 * 9 8 7 25 25 C 1.38146 * 120.05869 * 359.44202 * 24 9 8 26 26 H 1.08999 * 109.46764 * 300.00691 * 1 2 3 27 27 H 1.09000 * 109.46770 * 59.99746 * 1 2 3 28 28 H 1.08998 * 109.47570 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47056 * 239.99398 * 2 1 3 30 30 H 1.09006 * 109.46981 * 119.99906 * 2 1 3 31 31 H 1.09001 * 109.47114 * 315.00173 * 4 3 2 32 32 H 1.08994 * 109.47585 * 194.99778 * 4 3 2 33 33 H 1.08005 * 120.02948 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.96948 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.47076 * 330.00310 * 10 9 8 36 36 H 1.09000 * 109.47366 * 210.00937 * 10 9 8 37 37 H 1.08992 * 109.47139 * 183.95276 * 12 11 10 38 38 H 1.08998 * 109.46871 * 303.95426 * 12 11 10 39 39 H 1.09004 * 109.46908 * 63.95125 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 11 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 13 11 42 42 H 1.08996 * 109.47853 * 179.97438 * 15 13 11 43 43 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 44 44 H 1.08001 * 119.97418 * 179.69957 * 24 9 8 45 45 H 1.07994 * 120.03134 * 180.25274 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 8 3.9339 1.1498 -1.3006 6 6 3.7696 2.0917 -2.2662 7 6 4.2334 1.8564 -3.5524 8 6 4.0656 2.8158 -4.5321 9 6 3.4367 4.0099 -4.2317 10 6 3.2555 5.0549 -5.3023 11 7 1.9752 4.8362 -5.9884 12 6 0.8446 5.0675 -5.0794 13 6 1.8689 5.6800 -7.1861 14 1 2.7279 5.5024 -7.8332 15 6 1.8385 7.1525 -6.7716 16 6 0.6021 5.3410 -7.9287 17 1 -0.0582 4.5755 -7.5486 18 6 0.2856 6.0088 -9.0927 19 7 1.0894 6.9413 -9.5552 20 14 -1.2850 5.5890 -10.0127 21 1 -2.3936 6.4425 -9.5148 22 1 -1.0879 5.8307 -11.4646 23 1 -1.6222 4.1600 -9.7901 24 6 2.9788 4.2491 -2.9492 25 6 3.1386 3.2906 -1.9674 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8502 0.7644 0.7275 32 1 3.7147 2.4782 0.2665 33 1 4.7259 0.9244 -3.7873 34 1 4.4269 2.6333 -5.5334 35 1 4.0707 4.9825 -6.0223 36 1 3.2596 6.0455 -4.8475 37 1 -0.0878 4.8310 -5.5919 38 1 0.9483 4.4303 -4.2012 39 1 0.8346 6.1128 -4.7707 40 1 0.9795 7.3301 -6.1246 41 1 2.7547 7.3978 -6.2345 42 1 1.7600 7.7787 -7.6602 43 1 0.8669 7.4108 -10.3743 44 1 2.4922 5.1846 -2.7158 45 1 2.7772 3.4763 -0.9668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783457762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:06 Heat of formation + Delta-G solvation = -56.985531 kcal Electronic energy + Delta-G solvation = -23612.247524 eV Core-core repulsion = 20209.309007 eV Total energy + Delta-G solvation = -3402.938517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29349 -38.59367 -37.26398 -36.20265 -32.82501 -31.60758 -30.77254 -30.62264 -28.28885 -26.72398 -25.88644 -25.13384 -23.48017 -22.93710 -22.40406 -20.85640 -19.12562 -18.41007 -17.21878 -16.80042 -16.18099 -15.45870 -15.39258 -15.24434 -14.81748 -14.36053 -14.03903 -13.88924 -13.69858 -13.34620 -13.07882 -13.01301 -12.61115 -12.47720 -12.16321 -12.00351 -11.63668 -11.43048 -11.37027 -11.14764 -10.96148 -10.87484 -10.75681 -10.66110 -10.54369 -10.36985 -10.19073 -9.98292 -9.76707 -8.85154 -8.72969 -8.36126 -7.93753 -7.06858 -5.98021 -4.01417 1.59174 1.64209 3.14383 3.33015 3.35110 3.39532 3.44210 3.99453 4.45441 4.64338 4.78598 4.82529 4.96076 5.03289 5.11793 5.15319 5.22414 5.33566 5.39504 5.43162 5.55385 5.65835 5.67019 5.82286 5.88015 6.01897 6.19483 6.28606 6.35319 6.45063 6.46725 6.58863 6.67485 6.71922 6.85858 6.95247 6.97196 7.00994 7.16049 7.46840 7.52849 7.75715 7.87447 8.15993 8.42743 8.64247 9.04846 9.63518 11.09101 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.003244 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.289615 B = 8630.199888 C = 9358.182815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.392 6.392 4 C 0.214 3.786 5 O -0.335 6.335 6 C 0.113 3.887 7 C -0.151 4.151 8 C -0.065 4.065 9 C -0.091 4.091 10 C 0.091 3.909 11 N -0.529 5.529 12 C 0.032 3.968 13 C 0.210 3.790 14 H 0.039 0.961 15 C -0.173 4.173 16 C -0.498 4.498 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.078 4.078 25 C -0.195 4.195 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.030 0.970 41 H 0.007 0.993 42 H 0.088 0.912 43 H 0.260 0.740 44 H 0.120 0.880 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -10.333 19.334 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.312 6.312 4 C 0.101 3.899 5 O -0.252 6.252 6 C 0.069 3.931 7 C -0.170 4.170 8 C -0.084 4.084 9 C -0.092 4.092 10 C -0.037 4.037 11 N -0.252 5.252 12 C -0.116 4.116 13 C 0.104 3.896 14 H 0.057 0.943 15 C -0.232 4.232 16 C -0.536 4.536 17 H 0.081 0.919 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.097 4.097 25 C -0.214 4.214 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.026 0.974 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.138 0.862 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.055 -10.727 18.997 22.395 hybrid contribution -0.814 0.688 -0.118 1.072 sum 4.241 -10.039 18.879 21.799 Atomic orbital electron populations 1.21756 0.93537 1.02353 1.03323 1.22539 0.95800 0.83191 1.00437 1.88075 1.21690 1.27825 1.93645 1.24068 0.80385 1.02454 0.82995 1.86183 1.75578 1.43265 1.20151 1.18852 0.97331 0.88112 0.88776 1.20390 1.05166 1.00945 0.90479 1.20864 0.96964 0.92129 0.98435 1.19937 0.98544 0.96338 0.94353 1.20980 0.94873 0.93847 0.93956 1.62384 0.99360 1.56492 1.06969 1.22281 0.95904 0.97708 0.95712 1.19329 0.97916 0.86494 0.85843 0.94292 1.22408 0.96365 1.02783 1.01650 1.21132 1.05829 1.19571 1.07116 0.91948 1.24924 0.96998 0.95151 0.97241 1.69886 1.36940 1.24566 1.22111 0.86533 0.83422 0.78800 0.78872 1.20866 1.21320 1.19839 1.20865 0.97826 0.98638 0.92388 1.21147 1.05144 0.94443 1.00627 0.91949 0.91506 0.91039 0.92529 0.93305 0.88213 0.88200 0.85771 0.85250 0.90799 0.94861 0.91069 0.93596 0.96550 0.95097 0.97385 0.89365 0.93058 0.86244 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.51 6.53 37.16 0.24 0.75 16 3 O -0.39 -4.28 9.83 -59.04 -0.58 -4.86 16 4 C 0.21 1.97 6.39 101.05 0.65 2.62 16 5 O -0.34 -4.13 10.19 -43.21 -0.44 -4.57 16 6 C 0.11 1.58 6.63 -39.21 -0.26 1.32 16 7 C -0.15 -2.14 9.99 -39.43 -0.39 -2.54 16 8 C -0.07 -1.00 9.69 -39.61 -0.38 -1.38 16 9 C -0.09 -1.49 4.88 -104.60 -0.51 -2.00 16 10 C 0.09 1.69 4.56 -4.98 -0.02 1.67 16 11 N -0.53 -11.54 4.73 -237.73 -1.13 -12.67 16 12 C 0.03 0.66 8.56 60.07 0.51 1.18 16 13 C 0.21 5.31 2.34 -68.87 -0.16 5.15 16 14 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 15 C -0.17 -4.20 8.28 37.16 0.31 -3.89 16 16 C -0.50 -13.72 7.94 -34.44 -0.27 -14.00 16 17 H 0.06 1.74 6.75 -52.49 -0.35 1.38 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 19 N -0.90 -25.59 11.32 55.43 0.63 -24.97 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.08 -1.18 7.90 -39.61 -0.31 -1.49 16 25 C -0.20 -2.69 8.78 -39.43 -0.35 -3.04 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.55 8.04 -51.92 -0.42 0.14 16 30 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 31 H 0.10 0.63 8.01 -51.93 -0.42 0.21 16 32 H 0.10 0.80 6.70 -51.93 -0.35 0.45 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 36 H 0.03 0.61 6.88 -51.93 -0.36 0.26 16 37 H 0.07 1.56 6.53 -51.93 -0.34 1.22 16 38 H 0.05 0.85 5.91 -51.93 -0.31 0.54 16 39 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 40 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 41 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 42 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.12 1.70 8.00 -52.49 -0.42 1.28 16 45 H 0.13 1.53 5.86 -52.49 -0.31 1.22 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -30.12 356.08 -8.93 -39.05 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.09 Total: 1.19 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.67 Total: -15.03 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.50 Total: -37.64 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -1.02 Total: -9.43 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.12 -8.93 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783457762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.936 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds