Wall clock time and date at job start Tue Mar 31 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47725 * 2 1 4 4 C 1.42893 * 114.00413 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.47082 * 74.99892 * 4 3 2 6 6 C 1.35892 * 116.99751 * 75.00176 * 5 4 3 7 7 C 1.38736 * 120.05364 * 180.02562 * 6 5 4 8 8 C 1.38145 * 119.94336 * 180.02562 * 7 6 5 9 9 C 1.38264 * 120.05726 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.94504 * 179.97438 * 9 8 7 11 11 N 1.46895 * 109.47089 * 90.00169 * 10 9 8 12 12 C 1.46904 * 110.99841 * 66.04861 * 11 10 9 13 13 C 1.46899 * 111.00230 * 190.00004 * 11 10 9 14 14 H 1.09002 * 109.47043 * 55.00375 * 13 11 10 15 15 C 1.52997 * 109.47254 * 295.00304 * 13 11 10 16 16 C 1.50699 * 109.47244 * 175.00202 * 13 11 10 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47256 * 90.00491 * 20 18 16 22 22 H 1.48506 * 109.46930 * 210.00332 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00193 * 20 18 16 24 24 C 1.38261 * 120.10998 * 0.26069 * 9 8 7 25 25 C 1.38146 * 120.05869 * 359.44202 * 24 9 8 26 26 H 1.08999 * 109.46764 * 300.00691 * 1 2 3 27 27 H 1.09000 * 109.46770 * 59.99746 * 1 2 3 28 28 H 1.08998 * 109.47570 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47056 * 239.99398 * 2 1 3 30 30 H 1.09006 * 109.46981 * 119.99906 * 2 1 3 31 31 H 1.09001 * 109.47114 * 315.00173 * 4 3 2 32 32 H 1.08994 * 109.47585 * 194.99778 * 4 3 2 33 33 H 1.08005 * 120.02948 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.96948 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.47076 * 330.00310 * 10 9 8 36 36 H 1.09000 * 109.47366 * 210.00937 * 10 9 8 37 37 H 1.08992 * 109.47139 * 183.95276 * 12 11 10 38 38 H 1.08998 * 109.46871 * 303.95426 * 12 11 10 39 39 H 1.09004 * 109.46908 * 63.95125 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 11 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 13 11 42 42 H 1.08996 * 109.47853 * 179.97438 * 15 13 11 43 43 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 44 44 H 1.08001 * 119.97418 * 179.69957 * 24 9 8 45 45 H 1.07994 * 120.03134 * 180.25274 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 8 3.9339 1.1498 -1.3006 6 6 3.7696 2.0917 -2.2662 7 6 4.2334 1.8564 -3.5524 8 6 4.0656 2.8158 -4.5321 9 6 3.4367 4.0099 -4.2317 10 6 3.2555 5.0549 -5.3023 11 7 1.9752 4.8362 -5.9884 12 6 0.8446 5.0675 -5.0794 13 6 1.8689 5.6800 -7.1861 14 1 2.7279 5.5024 -7.8332 15 6 1.8385 7.1525 -6.7716 16 6 0.6021 5.3410 -7.9287 17 1 -0.0582 4.5755 -7.5486 18 6 0.2856 6.0088 -9.0927 19 7 1.0894 6.9413 -9.5552 20 14 -1.2850 5.5890 -10.0127 21 1 -2.3936 6.4425 -9.5148 22 1 -1.0879 5.8307 -11.4646 23 1 -1.6222 4.1600 -9.7901 24 6 2.9788 4.2491 -2.9492 25 6 3.1386 3.2906 -1.9674 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8502 0.7644 0.7275 32 1 3.7147 2.4782 0.2665 33 1 4.7259 0.9244 -3.7873 34 1 4.4269 2.6333 -5.5334 35 1 4.0707 4.9825 -6.0223 36 1 3.2596 6.0455 -4.8475 37 1 -0.0878 4.8310 -5.5919 38 1 0.9483 4.4303 -4.2012 39 1 0.8346 6.1128 -4.7707 40 1 0.9795 7.3301 -6.1246 41 1 2.7547 7.3978 -6.2345 42 1 1.7600 7.7787 -7.6602 43 1 0.8669 7.4108 -10.3743 44 1 2.4922 5.1846 -2.7158 45 1 2.7772 3.4763 -0.9668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783457762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:06 Heat of formation + Delta-G solvation = -74.490309 kcal Electronic energy + Delta-G solvation = -23613.006588 eV Core-core repulsion = 20209.309007 eV Total energy + Delta-G solvation = -3403.697581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28675 -39.75297 -38.53267 -37.39884 -34.77482 -32.43293 -32.01698 -31.83279 -30.05515 -28.06809 -27.18799 -26.90896 -24.94791 -23.73792 -23.50453 -22.16748 -20.89860 -19.35178 -18.24081 -17.97562 -17.70195 -17.09382 -16.42648 -16.27297 -16.14314 -16.00115 -15.29911 -15.16714 -14.84403 -14.59319 -14.45156 -14.35752 -14.16186 -13.50222 -13.31051 -13.10139 -12.99417 -12.86453 -12.67508 -12.60772 -12.54697 -12.36859 -12.26648 -12.19421 -12.02238 -11.96386 -11.62428 -11.56768 -10.95498 -10.89273 -10.48529 -9.86489 -9.11815 -8.77502 -8.09414 -6.20175 0.46458 0.48330 1.42673 1.43683 1.54493 2.28531 2.43858 2.63576 2.86881 3.19547 3.61863 3.89076 3.95665 4.03536 4.06017 4.16459 4.27752 4.31063 4.38909 4.48779 4.49076 4.58815 4.63497 4.68310 4.79349 4.81498 4.83508 4.90587 4.92093 5.02138 5.13543 5.17233 5.19690 5.23473 5.33821 5.43471 5.55924 5.71837 5.78640 5.81113 5.82173 5.99909 6.20832 6.47281 6.50605 6.75984 6.93511 7.48995 8.96548 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.003244 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.289615 B = 8630.199888 C = 9358.182815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.204 3.796 5 O -0.341 6.341 6 C 0.116 3.884 7 C -0.157 4.157 8 C -0.073 4.073 9 C -0.110 4.110 10 C 0.097 3.903 11 N -0.539 5.539 12 C 0.041 3.959 13 C 0.215 3.785 14 H 0.008 0.992 15 C -0.158 4.158 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.271 1.271 24 C -0.082 4.082 25 C -0.193 4.193 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.018 0.982 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.061 0.939 43 H 0.261 0.739 44 H 0.126 0.874 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -11.469 21.301 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.332 6.332 4 C 0.092 3.908 5 O -0.257 6.257 6 C 0.072 3.928 7 C -0.175 4.175 8 C -0.091 4.091 9 C -0.111 4.111 10 C -0.030 4.030 11 N -0.263 5.263 12 C -0.107 4.107 13 C 0.108 3.892 14 H 0.026 0.974 15 C -0.218 4.218 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.100 4.100 25 C -0.212 4.212 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.795 -11.873 20.989 24.586 hybrid contribution -0.677 0.959 -0.607 1.321 sum 4.118 -10.914 20.382 23.484 Atomic orbital electron populations 1.21776 0.93321 1.03317 1.02486 1.22682 0.96084 0.82619 1.01076 1.88054 1.22582 1.28937 1.93602 1.24543 0.79902 1.04412 0.81968 1.86201 1.75587 1.42878 1.21055 1.18990 0.96312 0.88340 0.89174 1.20566 1.05187 1.01255 0.90536 1.20941 0.97030 0.92174 0.98968 1.19764 1.00654 0.96364 0.94322 1.20923 0.92914 0.94911 0.94266 1.62261 1.01281 1.55829 1.06896 1.22191 0.94530 0.98228 0.95728 1.19081 0.95730 0.87500 0.86894 0.97411 1.22201 0.97325 1.01682 1.00573 1.21384 1.06616 1.19502 1.07801 0.92717 1.25672 0.99938 0.95028 0.98029 1.70009 1.38404 1.25237 1.22425 0.85557 0.79851 0.78598 0.77622 1.20159 1.20892 1.19557 1.20954 0.97722 0.99277 0.92074 1.21310 1.04716 0.94020 1.01129 0.91524 0.93521 0.89259 0.93695 0.90782 0.84919 0.86929 0.84205 0.85176 0.91374 0.94680 0.92948 0.91582 0.96329 0.94981 0.95470 0.91973 0.92981 0.85564 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.05 0.81 6.53 71.98 0.47 1.28 16 3 O -0.41 -7.98 9.83 -126.21 -1.24 -9.22 16 4 C 0.20 3.15 6.39 113.37 0.72 3.87 16 5 O -0.34 -7.55 10.19 -69.56 -0.71 -8.26 16 6 C 0.12 3.02 6.63 22.51 0.15 3.17 16 7 C -0.16 -4.23 9.99 22.37 0.22 -4.00 16 8 C -0.07 -2.18 9.69 22.25 0.22 -1.96 16 9 C -0.11 -3.54 4.88 -19.85 -0.10 -3.64 16 10 C 0.10 3.61 4.56 85.56 0.39 4.00 16 11 N -0.54 -23.73 4.73 -906.06 -4.29 -28.02 16 12 C 0.04 1.68 8.56 127.69 1.09 2.77 16 13 C 0.21 11.09 2.34 44.17 0.10 11.19 16 14 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 15 C -0.16 -7.78 8.28 71.98 0.60 -7.19 16 16 C -0.51 -28.81 7.94 25.60 0.20 -28.61 16 17 H 0.05 3.09 6.75 -2.91 -0.02 3.07 16 18 C 0.01 0.65 5.30 84.65 0.45 1.10 16 19 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 20 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C -0.08 -2.34 7.90 22.25 0.18 -2.16 16 25 C -0.19 -4.94 8.78 22.37 0.20 -4.74 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.80 8.04 -2.38 -0.02 0.78 16 30 H 0.07 0.79 8.11 -2.38 -0.02 0.77 16 31 H 0.13 1.16 8.01 -2.39 -0.02 1.14 16 32 H 0.11 1.43 6.70 -2.39 -0.02 1.42 16 33 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 36 H 0.04 1.27 6.88 -2.39 -0.02 1.26 16 37 H 0.05 2.29 6.53 -2.39 -0.02 2.28 16 38 H 0.07 2.38 5.91 -2.39 -0.01 2.37 16 39 H 0.02 0.73 6.28 -2.38 -0.01 0.71 16 40 H 0.03 1.52 6.39 -2.39 -0.02 1.50 16 41 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 42 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 43 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.13 3.38 8.00 -2.91 -0.02 3.35 16 45 H 0.14 3.10 5.86 -2.91 -0.02 3.08 16 Total: -1.00 -64.30 356.08 2.63 -61.67 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.97 Total: 17.06 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 5.63 Total: -26.43 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -4.05 Total: -81.18 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -1.95 Total: -17.48 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.30 2.63 -61.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783457762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.821 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds