Wall clock time and date at job start Tue Mar 31 2020 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46831 * 2 1 4 4 C 1.42902 * 113.99863 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47205 * 74.99770 * 4 3 2 6 6 C 1.35900 * 117.00265 * 74.99923 * 5 4 3 7 7 C 1.38726 * 120.05752 * 179.97438 * 6 5 4 8 8 C 1.38149 * 119.94477 * 180.02562 * 7 6 5 9 9 C 1.38266 * 120.05411 * 0.28574 * 8 7 6 10 10 C 1.50696 * 119.94508 * 179.70262 * 9 8 7 11 11 N 1.46898 * 109.47368 * 89.99244 * 10 9 8 12 12 C 1.46899 * 110.99935 * 293.95509 * 11 10 9 13 13 C 1.46899 * 111.00184 * 170.00343 * 11 10 9 14 14 H 1.09010 * 109.47102 * 310.00291 * 13 11 10 15 15 C 1.52997 * 109.47402 * 69.99560 * 13 11 10 16 16 C 1.50697 * 109.47328 * 190.00428 * 13 11 10 17 17 H 1.07998 * 120.00211 * 359.97438 * 16 13 11 18 18 C 1.37878 * 119.99884 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00053 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99770 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47133 * 60.00393 * 20 18 16 22 22 H 1.48508 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47597 * 300.00409 * 20 18 16 24 24 C 1.38264 * 120.10762 * 359.44038 * 9 8 7 25 25 C 1.38144 * 120.05928 * 0.55731 * 24 9 8 26 26 H 1.09005 * 109.46756 * 60.00523 * 1 2 3 27 27 H 1.09005 * 109.47453 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47469 * 300.00324 * 1 2 3 29 29 H 1.08995 * 109.46958 * 239.99553 * 2 1 3 30 30 H 1.09002 * 109.46319 * 119.99734 * 2 1 3 31 31 H 1.09003 * 109.46710 * 315.00140 * 4 3 2 32 32 H 1.08998 * 109.47258 * 195.00344 * 4 3 2 33 33 H 1.08000 * 120.02799 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.97030 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47057 * 209.99743 * 10 9 8 36 36 H 1.09005 * 109.46844 * 329.99277 * 10 9 8 37 37 H 1.08995 * 109.47343 * 60.00292 * 12 11 10 38 38 H 1.09001 * 109.46908 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.47602 * 299.99722 * 12 11 10 40 40 H 1.09000 * 109.47591 * 300.00776 * 15 13 11 41 41 H 1.09004 * 109.46511 * 60.00724 * 15 13 11 42 42 H 1.09001 * 109.47264 * 179.97438 * 15 13 11 43 43 H 0.97004 * 119.99726 * 179.97438 * 19 18 16 44 44 H 1.08007 * 119.96975 * 180.26053 * 24 9 8 45 45 H 1.08006 * 120.02939 * 179.70744 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 8 3.9338 1.1499 -1.3005 6 6 3.7695 2.0918 -2.2663 7 6 4.2342 1.8570 -3.5521 8 6 4.0664 2.8163 -4.5319 9 6 3.4412 4.0120 -4.2304 10 6 3.2654 5.0595 -5.2995 11 7 1.9855 4.8463 -5.9882 12 6 1.9942 3.5819 -6.7359 13 6 1.6675 5.9772 -6.8703 14 1 1.7727 6.9104 -6.3168 15 6 2.6272 5.9802 -8.0619 16 6 0.2508 5.8444 -7.3664 17 1 -0.3529 5.0038 -7.0578 18 6 -0.2747 6.7962 -8.2144 19 7 0.4603 7.8201 -8.5899 20 14 -2.0306 6.6312 -8.8300 21 1 -2.9622 6.6275 -7.6736 22 1 -2.3525 7.7752 -9.7206 23 1 -2.1733 5.3602 -9.5847 24 6 2.9721 4.2461 -2.9511 25 6 3.1373 3.2901 -1.9677 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8501 0.7645 0.7276 32 1 3.7145 2.4784 0.2666 33 1 4.7268 0.9250 -3.7869 34 1 4.4285 2.6340 -5.5330 35 1 3.2720 6.0492 -4.8430 36 1 4.0815 4.9855 -6.0183 37 1 2.1627 2.7538 -6.0475 38 1 1.0348 3.4487 -7.2358 39 1 2.7913 3.6045 -7.4790 40 1 3.6519 6.0762 -7.7030 41 1 2.5219 5.0470 -8.6153 42 1 2.3909 6.8190 -8.7166 43 1 0.0907 8.4894 -9.1868 44 1 2.4802 5.1793 -2.7191 45 1 2.7749 3.4754 -0.9673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783457763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:08 Heat of formation + Delta-G solvation = -57.517591 kcal Electronic energy + Delta-G solvation = -23584.292781 eV Core-core repulsion = 20181.331192 eV Total energy + Delta-G solvation = -3402.961589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28530 -38.58733 -37.25248 -36.19583 -32.82492 -31.60295 -30.79616 -30.60105 -28.23856 -26.83483 -25.71601 -25.17703 -23.56797 -22.95396 -22.31179 -20.84996 -19.13655 -18.40345 -17.20587 -16.80151 -16.18710 -15.44572 -15.36928 -15.22245 -14.83261 -14.30604 -14.08761 -13.91508 -13.63284 -13.35332 -13.14726 -12.96471 -12.60291 -12.46113 -12.13983 -11.98372 -11.62726 -11.50659 -11.29508 -11.13160 -10.97457 -10.91023 -10.70506 -10.61442 -10.58852 -10.38970 -10.18057 -9.99814 -9.76115 -8.87962 -8.73464 -8.34631 -7.93625 -7.07635 -5.97299 -4.00618 1.58189 1.65494 3.14683 3.35499 3.36721 3.39311 3.42907 3.99552 4.45877 4.65574 4.80278 4.83796 4.97940 5.06177 5.12465 5.14689 5.22584 5.33979 5.40772 5.44012 5.53288 5.65294 5.68679 5.81815 5.90252 6.00888 6.19847 6.28395 6.34837 6.43802 6.47116 6.60216 6.68233 6.71284 6.85813 6.93375 6.96281 7.01092 7.16198 7.47223 7.50583 7.74990 7.88374 8.17819 8.42822 8.64147 9.05433 9.64177 11.09768 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003326 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.910064 B = 8417.544410 C = 9352.206477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.214 3.786 5 O -0.336 6.336 6 C 0.113 3.887 7 C -0.153 4.153 8 C -0.080 4.080 9 C -0.091 4.091 10 C 0.092 3.908 11 N -0.528 5.528 12 C 0.033 3.967 13 C 0.211 3.789 14 H 0.038 0.962 15 C -0.172 4.172 16 C -0.497 4.497 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.063 4.063 25 C -0.194 4.194 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.015 0.985 40 H 0.006 0.994 41 H 0.031 0.969 42 H 0.088 0.912 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.287 -13.343 15.978 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.311 6.311 4 C 0.101 3.899 5 O -0.252 6.252 6 C 0.070 3.930 7 C -0.171 4.171 8 C -0.098 4.098 9 C -0.092 4.092 10 C -0.036 4.036 11 N -0.252 5.252 12 C -0.115 4.115 13 C 0.105 3.895 14 H 0.056 0.944 15 C -0.231 4.231 16 C -0.536 4.536 17 H 0.080 0.920 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.082 4.082 25 C -0.213 4.213 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.050 0.950 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.850 -13.217 16.206 22.005 hybrid contribution -0.255 -0.063 -0.900 0.937 sum 6.595 -13.280 15.306 21.310 Atomic orbital electron populations 1.21760 0.93519 1.02321 1.03398 1.22534 0.95825 0.83209 1.00376 1.88088 1.21655 1.27778 1.93628 1.24074 0.80407 1.02496 0.82932 1.86175 1.75606 1.43273 1.20188 1.18844 0.97346 0.88140 0.88720 1.20316 1.05358 1.00895 0.90547 1.20870 0.97978 0.92694 0.98306 1.19934 0.98390 0.95879 0.94992 1.20986 0.92609 0.96250 0.93782 1.62368 1.27038 1.04079 1.31704 1.22272 1.01267 0.91964 0.96035 1.19326 0.94368 0.87990 0.87859 0.94407 1.22408 0.95827 1.02406 1.02497 1.21078 0.96880 1.08615 1.26988 0.92031 1.24922 0.97750 0.95271 0.96377 1.69877 1.36226 1.12096 1.35377 0.86587 0.84937 0.77358 0.78661 1.20245 1.21439 1.20393 1.20861 0.96510 0.98809 0.92017 1.21211 1.04867 0.94415 1.00783 0.91461 0.91074 0.91915 0.92593 0.93322 0.88220 0.88141 0.85898 0.85849 0.90811 0.94901 0.93590 0.91048 0.96641 0.97480 0.95000 0.89380 0.93005 0.85649 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.52 6.54 37.16 0.24 0.76 16 3 O -0.39 -4.36 9.83 -59.04 -0.58 -4.94 16 4 C 0.21 2.00 6.39 101.05 0.65 2.64 16 5 O -0.34 -4.14 10.19 -43.24 -0.44 -4.58 16 6 C 0.11 1.59 6.63 -39.22 -0.26 1.33 16 7 C -0.15 -2.13 9.99 -39.43 -0.39 -2.52 16 8 C -0.08 -1.19 7.96 -39.60 -0.32 -1.50 16 9 C -0.09 -1.50 4.88 -104.60 -0.51 -2.01 16 10 C 0.09 1.70 4.68 -4.98 -0.02 1.68 16 11 N -0.53 -11.54 4.69 -237.74 -1.12 -12.65 16 12 C 0.03 0.67 8.26 60.06 0.50 1.17 16 13 C 0.21 5.32 2.30 -68.87 -0.16 5.16 16 14 H 0.04 1.04 7.93 -51.92 -0.41 0.63 16 15 C -0.17 -4.18 8.22 37.16 0.31 -3.87 16 16 C -0.50 -13.73 7.91 -34.44 -0.27 -14.00 16 17 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 19 N -0.90 -25.64 11.32 55.43 0.63 -25.01 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.06 -0.98 9.69 -39.61 -0.38 -1.37 16 25 C -0.19 -2.73 8.78 -39.43 -0.35 -3.08 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 30 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 31 H 0.10 0.63 8.01 -51.93 -0.42 0.22 16 32 H 0.10 0.81 6.70 -51.93 -0.35 0.47 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.70 8.03 -52.49 -0.42 1.28 16 35 H 0.07 1.36 7.88 -51.93 -0.41 0.95 16 36 H 0.03 0.60 7.00 -51.93 -0.36 0.24 16 37 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 38 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 39 H 0.02 0.30 6.46 -51.93 -0.34 -0.04 16 40 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 41 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 42 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 45 H 0.13 1.58 5.86 -52.48 -0.31 1.27 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -30.16 357.03 -8.99 -39.15 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.15 Total: 1.15 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.69 Total: -15.02 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.49 Total: -37.67 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.02 Total: -9.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.16 -8.99 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783457763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.370 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds