Wall clock time and date at job start Tue Mar 31 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46831 * 2 1 4 4 C 1.42902 * 113.99863 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47205 * 74.99770 * 4 3 2 6 6 C 1.35900 * 117.00265 * 74.99923 * 5 4 3 7 7 C 1.38726 * 120.05752 * 179.97438 * 6 5 4 8 8 C 1.38149 * 119.94477 * 180.02562 * 7 6 5 9 9 C 1.38266 * 120.05411 * 0.28574 * 8 7 6 10 10 C 1.50696 * 119.94508 * 179.70262 * 9 8 7 11 11 N 1.46898 * 109.47368 * 89.99244 * 10 9 8 12 12 C 1.46899 * 110.99935 * 293.95509 * 11 10 9 13 13 C 1.46899 * 111.00184 * 170.00343 * 11 10 9 14 14 H 1.09010 * 109.47102 * 310.00291 * 13 11 10 15 15 C 1.52997 * 109.47402 * 69.99560 * 13 11 10 16 16 C 1.50697 * 109.47328 * 190.00428 * 13 11 10 17 17 H 1.07998 * 120.00211 * 359.97438 * 16 13 11 18 18 C 1.37878 * 119.99884 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00053 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99770 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47133 * 60.00393 * 20 18 16 22 22 H 1.48508 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47597 * 300.00409 * 20 18 16 24 24 C 1.38264 * 120.10762 * 359.44038 * 9 8 7 25 25 C 1.38144 * 120.05928 * 0.55731 * 24 9 8 26 26 H 1.09005 * 109.46756 * 60.00523 * 1 2 3 27 27 H 1.09005 * 109.47453 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47469 * 300.00324 * 1 2 3 29 29 H 1.08995 * 109.46958 * 239.99553 * 2 1 3 30 30 H 1.09002 * 109.46319 * 119.99734 * 2 1 3 31 31 H 1.09003 * 109.46710 * 315.00140 * 4 3 2 32 32 H 1.08998 * 109.47258 * 195.00344 * 4 3 2 33 33 H 1.08000 * 120.02799 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.97030 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47057 * 209.99743 * 10 9 8 36 36 H 1.09005 * 109.46844 * 329.99277 * 10 9 8 37 37 H 1.08995 * 109.47343 * 60.00292 * 12 11 10 38 38 H 1.09001 * 109.46908 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.47602 * 299.99722 * 12 11 10 40 40 H 1.09000 * 109.47591 * 300.00776 * 15 13 11 41 41 H 1.09004 * 109.46511 * 60.00724 * 15 13 11 42 42 H 1.09001 * 109.47264 * 179.97438 * 15 13 11 43 43 H 0.97004 * 119.99726 * 179.97438 * 19 18 16 44 44 H 1.08007 * 119.96975 * 180.26053 * 24 9 8 45 45 H 1.08006 * 120.02939 * 179.70744 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 8 3.9338 1.1499 -1.3005 6 6 3.7695 2.0918 -2.2663 7 6 4.2342 1.8570 -3.5521 8 6 4.0664 2.8163 -4.5319 9 6 3.4412 4.0120 -4.2304 10 6 3.2654 5.0595 -5.2995 11 7 1.9855 4.8463 -5.9882 12 6 1.9942 3.5819 -6.7359 13 6 1.6675 5.9772 -6.8703 14 1 1.7727 6.9104 -6.3168 15 6 2.6272 5.9802 -8.0619 16 6 0.2508 5.8444 -7.3664 17 1 -0.3529 5.0038 -7.0578 18 6 -0.2747 6.7962 -8.2144 19 7 0.4603 7.8201 -8.5899 20 14 -2.0306 6.6312 -8.8300 21 1 -2.9622 6.6275 -7.6736 22 1 -2.3525 7.7752 -9.7206 23 1 -2.1733 5.3602 -9.5847 24 6 2.9721 4.2461 -2.9511 25 6 3.1373 3.2901 -1.9677 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8501 0.7645 0.7276 32 1 3.7145 2.4784 0.2666 33 1 4.7268 0.9250 -3.7869 34 1 4.4285 2.6340 -5.5330 35 1 3.2720 6.0492 -4.8430 36 1 4.0815 4.9855 -6.0183 37 1 2.1627 2.7538 -6.0475 38 1 1.0348 3.4487 -7.2358 39 1 2.7913 3.6045 -7.4790 40 1 3.6519 6.0762 -7.7030 41 1 2.5219 5.0470 -8.6153 42 1 2.3909 6.8190 -8.7166 43 1 0.0907 8.4894 -9.1868 44 1 2.4802 5.1793 -2.7191 45 1 2.7749 3.4754 -0.9673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783457763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:07 Heat of formation + Delta-G solvation = -75.030456 kcal Electronic energy + Delta-G solvation = -23585.052196 eV Core-core repulsion = 20181.331192 eV Total energy + Delta-G solvation = -3403.721004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28286 -39.75003 -38.52611 -37.39729 -34.77954 -32.44752 -32.02994 -31.82979 -29.99652 -28.11132 -27.26751 -26.75917 -25.04835 -23.73413 -23.44597 -22.15847 -20.91461 -19.35120 -18.24879 -17.97612 -17.70129 -17.09038 -16.43839 -16.24524 -16.11514 -16.02229 -15.31864 -15.13984 -14.77137 -14.65633 -14.50611 -14.28887 -14.18648 -13.48743 -13.33323 -13.08889 -12.93493 -12.90308 -12.69609 -12.59993 -12.52688 -12.36051 -12.29377 -12.15280 -12.05836 -11.96446 -11.64820 -11.55675 -10.95472 -10.92072 -10.47416 -9.86776 -9.11598 -8.77635 -8.08955 -6.19815 0.45107 0.49692 1.43377 1.44975 1.52600 2.28247 2.44016 2.63872 2.86941 3.19673 3.61851 3.89429 3.96968 4.02238 4.06830 4.16453 4.27152 4.31804 4.37387 4.48646 4.49138 4.58117 4.64329 4.70416 4.75431 4.80827 4.84479 4.90684 4.92140 5.01872 5.14490 5.16740 5.19855 5.23537 5.34653 5.44925 5.53942 5.71316 5.77987 5.80981 5.81711 6.00396 6.23093 6.47133 6.51687 6.75661 6.93376 7.49264 8.96652 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003326 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.910064 B = 8417.544410 C = 9352.206477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.412 6.412 4 C 0.204 3.796 5 O -0.340 6.340 6 C 0.116 3.884 7 C -0.155 4.155 8 C -0.080 4.080 9 C -0.110 4.110 10 C 0.098 3.902 11 N -0.540 5.540 12 C 0.042 3.958 13 C 0.215 3.785 14 H 0.006 0.994 15 C -0.158 4.158 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.075 4.075 25 C -0.194 4.194 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.033 0.967 42 H 0.061 0.939 43 H 0.261 0.739 44 H 0.122 0.878 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -15.249 17.168 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.333 6.333 4 C 0.092 3.908 5 O -0.256 6.256 6 C 0.072 3.928 7 C -0.174 4.174 8 C -0.098 4.098 9 C -0.111 4.111 10 C -0.030 4.030 11 N -0.264 5.264 12 C -0.107 4.107 13 C 0.108 3.892 14 H 0.024 0.976 15 C -0.217 4.217 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.093 4.093 25 C -0.213 4.213 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.140 0.860 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.131 -15.140 17.413 24.151 hybrid contribution -0.297 0.463 -1.133 1.259 sum 6.835 -14.676 16.280 22.960 Atomic orbital electron populations 1.21783 0.93411 1.03327 1.02431 1.22682 0.96024 0.82591 1.01135 1.88068 1.22632 1.28997 1.93607 1.24538 0.79883 1.04375 0.82019 1.86193 1.75582 1.42817 1.21026 1.18998 0.96331 0.88185 0.89316 1.20551 1.05092 1.01365 0.90376 1.20969 0.97535 0.92177 0.99150 1.19761 1.00505 0.96180 0.94634 1.20924 0.90981 0.96925 0.94146 1.62249 1.29477 1.03504 1.31156 1.22192 1.00326 0.91778 0.96372 1.19077 0.93843 0.88046 0.88194 0.97589 1.22202 0.96670 1.01250 1.01593 1.21335 0.98122 1.08484 1.27318 0.92855 1.25668 1.01518 0.94942 0.96526 1.70003 1.37748 1.12618 1.35739 0.85618 0.80313 0.77573 0.78145 1.19969 1.20903 1.19674 1.20929 0.96842 0.99268 0.92282 1.21323 1.04712 0.94193 1.01065 0.93607 0.89152 0.91629 0.93558 0.90738 0.84822 0.87079 0.83901 0.84820 0.91621 0.94548 0.91538 0.93035 0.96049 0.95583 0.94759 0.92013 0.92970 0.85986 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.05 0.83 6.54 71.98 0.47 1.30 16 3 O -0.41 -8.35 9.83 -126.21 -1.24 -9.59 16 4 C 0.20 3.25 6.39 113.37 0.72 3.98 16 5 O -0.34 -7.52 10.19 -69.65 -0.71 -8.23 16 6 C 0.12 3.02 6.63 22.50 0.15 3.17 16 7 C -0.16 -3.99 9.99 22.37 0.22 -3.77 16 8 C -0.08 -2.24 7.96 22.26 0.18 -2.07 16 9 C -0.11 -3.54 4.88 -19.85 -0.10 -3.64 16 10 C 0.10 3.63 4.68 85.56 0.40 4.03 16 11 N -0.54 -23.78 4.69 -906.06 -4.25 -28.03 16 12 C 0.04 1.66 8.26 127.69 1.06 2.71 16 13 C 0.22 11.13 2.30 44.17 0.10 11.23 16 14 H 0.01 0.35 7.93 -2.38 -0.02 0.34 16 15 C -0.16 -7.73 8.22 71.98 0.59 -7.14 16 16 C -0.51 -28.88 7.91 25.60 0.20 -28.68 16 17 H 0.05 3.02 7.12 -2.91 -0.02 3.00 16 18 C 0.01 0.66 5.30 84.66 0.45 1.11 16 19 N -0.92 -53.52 11.32 21.45 0.24 -53.27 16 20 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 C -0.07 -2.28 9.69 22.25 0.22 -2.07 16 25 C -0.19 -5.21 8.78 22.36 0.20 -5.01 16 26 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.83 8.03 -2.39 -0.02 0.81 16 30 H 0.07 0.81 8.11 -2.39 -0.02 0.79 16 31 H 0.13 1.21 8.01 -2.39 -0.02 1.19 16 32 H 0.11 1.51 6.70 -2.39 -0.02 1.49 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.13 3.41 8.03 -2.91 -0.02 3.39 16 35 H 0.07 2.49 7.88 -2.39 -0.02 2.47 16 36 H 0.04 1.31 7.00 -2.38 -0.02 1.30 16 37 H 0.07 2.36 6.16 -2.39 -0.01 2.34 16 38 H 0.05 2.24 6.76 -2.39 -0.02 2.22 16 39 H 0.02 0.81 6.46 -2.39 -0.02 0.80 16 40 H 0.03 1.13 6.91 -2.39 -0.02 1.11 16 41 H 0.03 1.61 6.42 -2.39 -0.02 1.60 16 42 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 45 H 0.14 3.29 5.86 -2.91 -0.02 3.27 16 Total: -1.00 -64.56 357.03 2.63 -61.93 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.96 Total: 17.22 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 5.60 Total: -26.47 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -4.01 Total: -81.30 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.95 Total: -17.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.56 2.63 -61.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783457763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.102 kcal (2) G-P(sol) polarization free energy of solvation -64.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds