Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47192 * 299.99904 * 3 2 1 6 6 H 1.48502 * 109.46804 * 60.00174 * 3 2 1 7 7 C 1.37876 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47097 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47405 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00066 * 190.00036 * 12 11 10 14 14 C 1.53041 * 109.52046 * 185.83632 * 13 12 11 15 15 C 1.53112 * 109.28057 * 300.81822 * 14 13 12 16 16 C 1.53002 * 109.52400 * 177.56211 * 15 14 13 17 17 H 1.09007 * 109.46813 * 300.00078 * 16 15 14 18 18 O 1.42898 * 109.47508 * 59.99773 * 16 15 14 19 19 C 1.50700 * 109.47532 * 180.02562 * 16 15 14 20 20 N 1.30502 * 125.64425 * 305.27285 * 19 16 15 21 21 C 1.34127 * 109.25683 * 180.14781 * 20 19 16 22 22 C 1.34672 * 108.01948 * 359.61488 * 21 20 19 23 23 N 1.35041 * 125.65474 * 124.99410 * 19 16 15 24 24 H 0.96995 * 126.39762 * 0.02562 * 23 19 16 25 25 C 1.53117 * 109.16168 * 57.65617 * 15 14 13 26 26 C 1.46846 * 110.99687 * 314.20773 * 12 11 10 27 27 H 0.97006 * 119.99489 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46788 * 60.00286 * 9 7 2 29 29 H 1.08991 * 109.47013 * 300.00397 * 9 7 2 30 30 H 1.08999 * 109.47223 * 60.00381 * 10 9 7 31 31 H 1.09004 * 109.47495 * 300.00245 * 10 9 7 32 32 H 1.09000 * 109.47574 * 60.00182 * 11 10 9 33 33 H 1.09003 * 109.47261 * 299.99989 * 11 10 9 34 34 H 1.08997 * 109.46385 * 65.82485 * 13 12 11 35 35 H 1.09001 * 109.45364 * 305.84289 * 13 12 11 36 36 H 1.09002 * 109.50101 * 180.87464 * 14 13 12 37 37 H 1.08997 * 109.53491 * 60.78323 * 14 13 12 38 38 H 1.08995 * 109.52676 * 297.68398 * 15 14 13 39 39 H 0.96705 * 113.99262 * 59.99842 * 18 16 15 40 40 H 1.08002 * 125.99481 * 179.88589 * 21 20 19 41 41 H 1.07996 * 126.59510 * 180.20974 * 22 21 20 42 42 H 1.09001 * 109.50521 * 62.28482 * 25 15 14 43 43 H 1.09001 * 109.50742 * 182.40607 * 25 15 14 44 44 H 1.08997 * 109.46520 * 294.17184 * 26 12 11 45 45 H 1.09000 * 109.46740 * 54.15969 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0006 13 6 1.7505 -7.3810 -0.2392 14 6 2.7481 -8.5316 -0.0877 15 6 3.8891 -8.3469 -1.0919 16 6 4.9208 -9.4610 -0.9041 17 1 5.3194 -9.4199 0.1096 18 8 4.2977 -10.7288 -1.1199 19 6 6.0435 -9.2779 -1.8926 20 7 5.9085 -9.1764 -3.1866 21 6 7.1178 -9.0265 -3.7472 22 6 8.0364 -9.0270 -2.7624 23 7 7.3554 -9.1864 -1.5857 24 1 7.7429 -9.2266 -0.6973 25 6 4.5538 -6.9884 -0.8532 26 6 3.5038 -5.8825 -0.9825 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8717 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8537 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8886 34 1 1.3375 -7.3889 -1.2479 35 1 0.9443 -7.5017 0.4844 36 1 2.2435 -9.4784 -0.2802 37 1 3.1513 -8.5334 0.9249 38 1 3.4916 -8.3859 -2.1061 39 1 3.9197 -10.8358 -2.0035 40 1 7.3192 -8.9194 -4.8028 41 1 9.1050 -8.9221 -2.8786 42 1 4.9854 -6.9652 0.1474 43 1 5.3393 -6.8326 -1.5927 44 1 3.0826 -5.8974 -1.9877 45 1 3.9712 -4.9150 -0.7989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788473179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -8.585471 kcal Electronic energy + Delta-G solvation = -23552.879721 eV Core-core repulsion = 20184.332739 eV Total energy + Delta-G solvation = -3368.546982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.40141 -39.36562 -37.30988 -34.62420 -33.05771 -32.79379 -31.45579 -30.50273 -29.97260 -27.26038 -25.62706 -23.48647 -23.12323 -21.96567 -21.82767 -20.66868 -19.93557 -19.48255 -18.72964 -16.78512 -16.33760 -15.74791 -15.56178 -14.95155 -14.83587 -14.65913 -14.46134 -14.35686 -14.04882 -13.86770 -13.58825 -13.19790 -12.98530 -12.24042 -12.22936 -12.10730 -11.49737 -11.46874 -11.18781 -11.14218 -10.86986 -10.72195 -10.67696 -10.49566 -10.35660 -10.32635 -10.15587 -10.08027 -9.58097 -9.30711 -9.00647 -8.76089 -8.32723 -7.97596 -5.97937 -3.99921 1.70159 2.75567 2.81595 3.32131 3.39394 3.43699 3.97781 4.14665 4.19757 4.40493 4.48505 4.64742 4.76670 4.92600 5.05956 5.14304 5.28680 5.29777 5.37933 5.45558 5.49042 5.64589 5.69919 5.76465 5.79687 5.83171 5.91666 6.00629 6.09046 6.13392 6.19980 6.34047 6.35928 6.44847 6.73511 6.81612 6.98746 7.12249 7.23836 7.45427 7.46230 7.70541 7.75778 7.85688 8.02656 8.45842 9.07451 9.63984 11.13575 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.002884 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.509942 B = 9707.189583 C =10724.875680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.054 3.946 14 C -0.104 4.104 15 C -0.108 4.108 16 C 0.201 3.799 17 H 0.109 0.891 18 O -0.549 6.549 19 C 0.180 3.820 20 N -0.480 5.480 21 C -0.027 4.027 22 C -0.054 4.054 23 N -0.560 5.560 24 H 0.419 0.581 25 C -0.105 4.105 26 C 0.052 3.948 27 H 0.259 0.741 28 H 0.014 0.986 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.385 0.615 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 -22.407 -3.025 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.264 5.264 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.128 4.128 16 C 0.140 3.860 17 H 0.127 0.873 18 O -0.353 6.353 19 C -0.084 4.084 20 N -0.201 5.201 21 C -0.176 4.176 22 C -0.188 4.188 23 N -0.164 5.164 24 H 0.257 0.743 25 C -0.143 4.143 26 C -0.076 4.076 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.188 0.812 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.991 -22.453 -2.415 26.052 hybrid contribution 1.036 1.250 -0.700 1.768 sum 14.027 -21.203 -3.115 25.613 Atomic orbital electron populations 1.69983 1.06049 1.26418 1.51118 1.25033 0.94848 0.99253 0.95419 0.86549 0.80121 0.83859 0.77554 1.19756 1.21043 1.21019 1.21289 0.93037 0.91071 1.50198 0.92694 1.19073 0.94025 0.91358 0.97139 1.21789 0.99330 0.93180 1.00650 1.22276 0.94047 0.90563 1.00225 1.62061 1.12804 1.02148 1.49348 1.22061 0.96134 0.89658 0.99526 1.21549 0.95622 0.97778 0.99227 1.21825 0.95541 0.94232 1.01153 1.20231 0.86941 0.84487 0.94351 0.87312 1.86559 1.76112 1.34058 1.38580 1.24193 0.84980 1.05515 0.93735 1.70169 1.26363 1.18833 1.04710 1.22382 0.88114 1.07284 0.99778 1.22816 0.99414 1.11324 0.85268 1.43285 1.07721 1.55480 1.09869 0.74283 1.21552 0.97731 0.93347 1.01718 1.22143 0.92823 0.99199 0.93452 0.93101 0.96804 0.96552 0.92615 0.93222 0.95389 0.91075 0.95205 0.90794 0.91060 0.91135 0.89912 0.76653 0.81243 0.80566 0.91405 0.91989 0.95155 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.35 4.40 -26.74 -0.12 -2.47 16 11 C 0.06 1.00 5.27 -3.83 -0.02 0.98 16 12 N -0.54 -8.21 4.81 -234.67 -1.13 -9.33 16 13 C 0.05 0.69 5.42 -3.83 -0.02 0.67 16 14 C -0.10 -1.09 5.20 -26.65 -0.14 -1.22 16 15 C -0.11 -1.11 1.98 -90.50 -0.18 -1.29 16 16 C 0.20 1.80 3.11 -27.88 -0.09 1.72 16 17 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 18 O -0.55 -5.11 12.71 -35.23 -0.45 -5.56 16 19 C 0.18 1.75 5.83 -155.42 -0.91 0.85 16 20 N -0.48 -5.52 11.21 -10.81 -0.12 -5.64 16 21 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 22 C -0.05 -0.40 12.04 -16.56 -0.20 -0.60 16 23 N -0.56 -4.19 6.15 -10.23 -0.06 -4.25 16 24 H 0.42 1.90 8.96 -40.82 -0.37 1.54 16 25 C -0.11 -1.23 5.08 -26.65 -0.14 -1.37 16 26 C 0.05 0.75 4.85 -3.83 -0.02 0.73 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16 32 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.38 2.94 9.04 45.56 0.41 3.35 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.75 7.33 -51.93 -0.38 0.37 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.40 5.82 -51.93 -0.30 1.10 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -33.41 358.52 -10.04 -43.45 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.82 Total: 1.35 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.58 Total: -15.74 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.58 Total: -45.80 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.45 Total: -5.56 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.41 -10.04 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788473179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.870 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds