Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47192 * 299.99904 * 3 2 1 6 6 H 1.48502 * 109.46804 * 60.00174 * 3 2 1 7 7 C 1.37876 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47097 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47405 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00066 * 190.00036 * 12 11 10 14 14 C 1.53041 * 109.52046 * 185.83632 * 13 12 11 15 15 C 1.53112 * 109.28057 * 300.81822 * 14 13 12 16 16 C 1.53002 * 109.52400 * 177.56211 * 15 14 13 17 17 H 1.09007 * 109.46813 * 300.00078 * 16 15 14 18 18 O 1.42898 * 109.47508 * 59.99773 * 16 15 14 19 19 C 1.50700 * 109.47532 * 180.02562 * 16 15 14 20 20 N 1.30502 * 125.64425 * 305.27285 * 19 16 15 21 21 C 1.34127 * 109.25683 * 180.14781 * 20 19 16 22 22 C 1.34672 * 108.01948 * 359.61488 * 21 20 19 23 23 N 1.35041 * 125.65474 * 124.99410 * 19 16 15 24 24 H 0.96995 * 126.39762 * 0.02562 * 23 19 16 25 25 C 1.53117 * 109.16168 * 57.65617 * 15 14 13 26 26 C 1.46846 * 110.99687 * 314.20773 * 12 11 10 27 27 H 0.97006 * 119.99489 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46788 * 60.00286 * 9 7 2 29 29 H 1.08991 * 109.47013 * 300.00397 * 9 7 2 30 30 H 1.08999 * 109.47223 * 60.00381 * 10 9 7 31 31 H 1.09004 * 109.47495 * 300.00245 * 10 9 7 32 32 H 1.09000 * 109.47574 * 60.00182 * 11 10 9 33 33 H 1.09003 * 109.47261 * 299.99989 * 11 10 9 34 34 H 1.08997 * 109.46385 * 65.82485 * 13 12 11 35 35 H 1.09001 * 109.45364 * 305.84289 * 13 12 11 36 36 H 1.09002 * 109.50101 * 180.87464 * 14 13 12 37 37 H 1.08997 * 109.53491 * 60.78323 * 14 13 12 38 38 H 1.08995 * 109.52676 * 297.68398 * 15 14 13 39 39 H 0.96705 * 113.99262 * 59.99842 * 18 16 15 40 40 H 1.08002 * 125.99481 * 179.88589 * 21 20 19 41 41 H 1.07996 * 126.59510 * 180.20974 * 22 21 20 42 42 H 1.09001 * 109.50521 * 62.28482 * 25 15 14 43 43 H 1.09001 * 109.50742 * 182.40607 * 25 15 14 44 44 H 1.08997 * 109.46520 * 294.17184 * 26 12 11 45 45 H 1.09000 * 109.46740 * 54.15969 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0006 13 6 1.7505 -7.3810 -0.2392 14 6 2.7481 -8.5316 -0.0877 15 6 3.8891 -8.3469 -1.0919 16 6 4.9208 -9.4610 -0.9041 17 1 5.3194 -9.4199 0.1096 18 8 4.2977 -10.7288 -1.1199 19 6 6.0435 -9.2779 -1.8926 20 7 5.9085 -9.1764 -3.1866 21 6 7.1178 -9.0265 -3.7472 22 6 8.0364 -9.0270 -2.7624 23 7 7.3554 -9.1864 -1.5857 24 1 7.7429 -9.2266 -0.6973 25 6 4.5538 -6.9884 -0.8532 26 6 3.5038 -5.8825 -0.9825 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8717 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8537 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8886 34 1 1.3375 -7.3889 -1.2479 35 1 0.9443 -7.5017 0.4844 36 1 2.2435 -9.4784 -0.2802 37 1 3.1513 -8.5334 0.9249 38 1 3.4916 -8.3859 -2.1061 39 1 3.9197 -10.8358 -2.0035 40 1 7.3192 -8.9194 -4.8028 41 1 9.1050 -8.9221 -2.8786 42 1 4.9854 -6.9652 0.1474 43 1 5.3393 -6.8326 -1.5927 44 1 3.0826 -5.8974 -1.9877 45 1 3.9712 -4.9150 -0.7989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788473179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -33.173707 kcal Electronic energy + Delta-G solvation = -23553.945947 eV Core-core repulsion = 20184.332739 eV Total energy + Delta-G solvation = -3369.613208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.03784 -40.39566 -38.23478 -36.15910 -34.73506 -33.44509 -32.92124 -31.71774 -30.84754 -28.66142 -27.00106 -24.82918 -24.29021 -23.24447 -22.59013 -21.53197 -21.24319 -20.64916 -19.37579 -18.52876 -17.53569 -16.85227 -16.51973 -16.33773 -16.06680 -15.75140 -15.63504 -15.52278 -14.88721 -14.75519 -14.52054 -14.44756 -14.06736 -13.93385 -13.65368 -13.38491 -12.96774 -12.89791 -12.64885 -12.49611 -12.23887 -12.15432 -12.09872 -11.70663 -11.49749 -11.40780 -11.20755 -11.13787 -11.00822 -10.99410 -10.85985 -10.56355 -9.39550 -9.25279 -8.21326 -6.32544 1.09090 1.39053 1.39457 1.53002 2.13413 2.20755 2.39949 2.96972 3.11772 3.31104 3.51187 3.63311 3.79035 3.94191 4.16397 4.20531 4.25745 4.33935 4.37810 4.47175 4.51594 4.53480 4.65276 4.67870 4.72790 4.80045 4.88730 4.93737 5.01018 5.01785 5.06296 5.13805 5.16299 5.23547 5.28440 5.46270 5.50128 5.72166 5.81672 5.83685 6.09866 6.21711 6.27543 6.48430 6.60882 6.84337 7.11640 7.36773 8.90943 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.002884 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.509942 B = 9707.189583 C =10724.875680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.066 3.934 12 N -0.538 5.538 13 C 0.051 3.949 14 C -0.095 4.095 15 C -0.099 4.099 16 C 0.209 3.791 17 H 0.126 0.874 18 O -0.555 6.555 19 C 0.165 3.835 20 N -0.514 5.514 21 C -0.063 4.063 22 C -0.037 4.037 23 N -0.552 5.552 24 H 0.434 0.566 25 C -0.093 4.093 26 C 0.051 3.949 27 H 0.264 0.736 28 H -0.012 1.012 29 H -0.007 1.007 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.390 0.610 40 H 0.179 0.821 41 H 0.212 0.788 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.670 -23.152 -2.418 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.062 4.062 12 N -0.262 5.262 13 C -0.077 4.077 14 C -0.133 4.133 15 C -0.119 4.119 16 C 0.148 3.852 17 H 0.144 0.856 18 O -0.360 6.360 19 C -0.099 4.099 20 N -0.236 5.236 21 C -0.211 4.211 22 C -0.172 4.172 23 N -0.157 5.157 24 H 0.274 0.726 25 C -0.131 4.131 26 C -0.077 4.077 27 H 0.073 0.927 28 H 0.006 0.994 29 H 0.011 0.989 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.240 0.760 40 H 0.196 0.804 41 H 0.229 0.771 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.168 -23.223 -1.797 27.796 hybrid contribution 0.352 1.460 -0.930 1.766 sum 15.520 -21.763 -2.727 26.869 Atomic orbital electron populations 1.70112 1.07827 1.27732 1.51762 1.26008 0.95802 1.03446 0.94702 0.85379 0.79060 0.78642 0.77849 1.18565 1.20332 1.20213 1.21711 0.93497 0.92368 1.50426 0.92280 1.18970 0.94389 0.93121 0.94700 1.21532 0.98115 0.92976 1.00628 1.22036 0.94044 0.90229 0.99891 1.62075 1.12356 1.02170 1.49634 1.22187 0.96983 0.89080 0.99432 1.21493 0.95063 0.97190 0.99505 1.21699 0.95844 0.94046 1.00286 1.20163 0.86302 0.83655 0.95052 0.85595 1.86540 1.76198 1.34083 1.39162 1.24221 0.85986 1.06306 0.93431 1.70099 1.27778 1.19800 1.05892 1.22763 0.88293 1.09004 1.01026 1.23343 1.00652 1.08707 0.84507 1.43298 1.07077 1.54570 1.10759 0.72563 1.21421 0.96606 0.92973 1.02103 1.22145 0.93241 0.99767 0.92563 0.92742 0.99375 0.98860 0.92655 0.93056 0.96176 0.91076 0.95721 0.90180 0.89533 0.90546 0.91350 0.76000 0.80368 0.77142 0.90454 0.92331 0.96424 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -4.07 4.40 30.59 0.13 -3.94 16 11 C 0.07 2.39 5.27 86.30 0.46 2.84 16 12 N -0.54 -16.11 4.81 -896.36 -4.31 -20.42 16 13 C 0.05 1.25 5.42 86.33 0.47 1.72 16 14 C -0.09 -1.79 5.20 30.65 0.16 -1.63 16 15 C -0.10 -1.89 1.98 -10.72 -0.02 -1.91 16 16 C 0.21 3.34 3.11 29.85 0.09 3.43 16 17 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 18 O -0.55 -9.29 12.71 -148.98 -1.89 -11.18 16 19 C 0.17 2.95 5.83 138.13 0.81 3.76 16 20 N -0.51 -11.48 11.21 -188.13 -2.11 -13.59 16 21 C -0.06 -1.15 11.87 83.52 0.99 -0.16 16 22 C -0.04 -0.46 12.04 83.09 1.00 0.54 16 23 N -0.55 -6.94 6.15 -186.27 -1.15 -8.08 16 24 H 0.43 2.67 8.96 -92.71 -0.83 1.84 16 25 C -0.09 -2.06 5.08 30.65 0.16 -1.90 16 26 C 0.05 1.47 4.85 86.33 0.42 1.89 16 27 H 0.26 15.26 8.31 -92.70 -0.77 14.48 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 31 H 0.05 2.17 6.21 -2.38 -0.01 2.16 16 32 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 36 H 0.09 1.43 7.77 -2.39 -0.02 1.41 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.39 5.51 9.04 -74.05 -0.67 4.84 16 40 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.36 7.33 -2.39 -0.02 1.34 16 44 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 2.30 5.82 -2.39 -0.01 2.28 16 Total: -1.00 -72.51 358.52 -2.16 -74.66 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -0.52 Total: 14.16 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.50 Total: -24.92 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -7.28 Total: -99.69 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.89 Total: -11.18 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.51 -2.16 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788473179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.490 kcal (2) G-P(sol) polarization free energy of solvation -72.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds