Wall clock time and date at job start Tue Mar 31 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 O 1.42897 * 109.47366 * 119.99999 * 2 1 3 5 5 C 1.42902 * 113.99843 * 90.00048 * 4 2 1 6 6 C 1.53001 * 109.46708 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.47102 * 185.00124 * 6 5 4 8 8 C 1.53001 * 109.47396 * 304.99776 * 6 5 4 9 9 N 1.46903 * 109.47409 * 65.00296 * 6 5 4 10 10 C 1.46896 * 110.99987 * 155.00022 * 9 6 5 11 11 C 1.50701 * 109.47050 * 179.97438 * 10 9 6 12 12 C 1.38302 * 119.93101 * 89.99407 * 11 10 9 13 13 C 1.38105 * 120.06695 * 180.02562 * 12 11 10 14 14 C 1.38871 * 119.93200 * 359.97438 * 13 12 11 15 15 O 1.35753 * 120.07178 * 180.02562 * 14 13 12 16 16 C 1.34831 * 116.99766 * 354.46580 * 15 14 13 17 17 H 1.08005 * 119.99910 * 5.05947 * 16 15 14 18 18 C 1.38653 * 120.00325 * 185.05796 * 16 15 14 19 19 N 1.31555 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00359 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47164 * 89.99653 * 20 18 16 22 22 H 1.48499 * 109.47014 * 210.00195 * 20 18 16 23 23 H 1.48506 * 109.46904 * 329.99621 * 20 18 16 24 24 C 1.38880 * 119.86456 * 0.27348 * 14 13 12 25 25 C 1.38102 * 119.92774 * 359.49328 * 24 14 13 26 26 H 1.08998 * 109.47336 * 60.00048 * 1 2 3 27 27 H 1.09001 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47041 * 299.99708 * 1 2 3 29 29 H 1.09001 * 109.47041 * 240.00292 * 2 1 3 30 30 H 1.08996 * 109.47552 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47237 * 300.00296 * 3 2 1 32 32 H 1.09003 * 109.47323 * 59.99844 * 3 2 1 33 33 H 1.08999 * 109.47204 * 60.00315 * 5 4 2 34 34 H 1.08998 * 109.47302 * 299.99786 * 5 4 2 35 35 H 1.08999 * 109.46850 * 60.00401 * 8 6 5 36 36 H 1.09000 * 109.46961 * 180.02562 * 8 6 5 37 37 H 1.09003 * 109.47094 * 300.00390 * 8 6 5 38 38 H 1.00895 * 111.00134 * 31.04191 * 9 6 5 39 39 H 1.08992 * 109.47420 * 59.99615 * 10 9 6 40 40 H 1.09000 * 109.46921 * 299.99445 * 10 9 6 41 41 H 1.08001 * 119.96675 * 0.02562 * 12 11 10 42 42 H 1.07996 * 120.03107 * 179.97438 * 13 12 11 43 43 H 0.97003 * 120.00171 * 179.97438 * 19 18 16 44 44 H 1.08001 * 120.03810 * 179.72208 * 24 14 13 45 45 H 1.07994 * 119.96815 * 180.22560 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7080 -2.6926 2.2945 7 1 2.9402 -3.7455 2.1345 8 6 3.9696 -1.9554 2.7482 9 7 1.6715 -2.5714 3.3283 10 6 1.8307 -3.6075 4.3574 11 6 0.7526 -3.4512 5.3987 12 6 -0.4531 -4.1119 5.2482 13 6 -1.4433 -3.9702 6.2005 14 6 -1.2272 -3.1638 7.3102 15 8 -2.1983 -3.0229 8.2482 16 6 -3.3892 -3.5990 7.9876 17 1 -3.5118 -4.2104 7.1057 18 6 -4.4563 -3.4067 8.8517 19 7 -4.3068 -2.6624 9.9261 20 14 -6.1060 -4.2055 8.4910 21 1 -6.1556 -5.5471 9.1255 22 1 -7.1962 -3.3585 9.0381 23 1 -6.2776 -4.3456 7.0226 24 6 -0.0174 -2.4975 7.4558 25 6 0.9707 -2.6471 6.5026 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 2.9321 -2.2466 0.1986 34 1 1.2539 -2.5434 0.7124 35 1 3.7375 -0.9026 2.9083 36 1 4.3316 -2.3935 3.6784 37 1 4.7388 -2.0454 1.9811 38 1 0.7490 -2.6049 2.9212 39 1 2.8081 -3.5044 4.8286 40 1 1.7514 -4.5922 3.8969 41 1 -0.6204 -4.7392 4.3852 42 1 -2.3847 -4.4861 6.0822 43 1 -5.0535 -2.5275 10.5305 44 1 0.1520 -1.8661 8.3155 45 1 1.9131 -2.1322 6.6171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800233922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:05 Heat of formation + Delta-G solvation = -60.311852 kcal Electronic energy + Delta-G solvation = -22983.713398 eV Core-core repulsion = 19580.630641 eV Total energy + Delta-G solvation = -3403.082757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.13546 -38.76652 -37.13163 -35.87824 -32.97110 -32.25769 -31.10001 -30.10142 -28.44646 -27.50253 -26.53684 -25.45541 -23.83260 -21.89964 -21.51015 -20.55301 -20.34415 -17.94046 -17.12386 -16.94270 -15.90984 -15.76796 -15.00380 -14.69123 -14.54316 -14.47461 -14.15264 -13.67734 -13.58622 -13.43776 -13.24104 -12.76822 -12.65146 -12.48287 -12.40338 -12.26885 -12.12622 -11.82954 -11.69837 -11.58263 -11.44537 -11.22490 -10.90420 -10.81152 -10.64843 -10.59213 -10.46584 -10.38848 -9.68371 -9.29375 -8.80714 -8.25122 -8.10740 -7.13275 -6.42157 -4.00961 2.28040 2.34159 3.13874 3.14872 3.19712 3.49961 3.98802 4.24615 4.60312 4.71942 4.79858 4.85623 4.92002 4.99170 5.12914 5.17310 5.24359 5.34088 5.39346 5.42211 5.46506 5.53167 5.62750 5.63034 5.65064 5.74460 5.79910 5.86955 5.94346 5.98610 6.01406 6.05366 6.26482 6.39262 6.48413 6.76567 6.95487 7.06430 7.10702 7.23532 7.32560 7.42234 7.48188 7.58373 7.88602 8.03085 9.03552 9.74747 10.76066 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002915 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.517213 B = 9603.383516 C =10378.435365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.361 6.361 5 C 0.063 3.937 6 C 0.085 3.915 7 H 0.050 0.950 8 C -0.134 4.134 9 N -0.671 5.671 10 C 0.117 3.883 11 C -0.182 4.182 12 C -0.067 4.067 13 C -0.235 4.235 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.194 4.194 25 C -0.051 4.051 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.342 0.658 39 H 0.070 0.930 40 H 0.025 0.975 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.270 0.730 44 H 0.116 0.884 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.426 1.378 -19.422 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.280 6.280 5 C -0.015 4.015 6 C -0.025 4.025 7 H 0.068 0.932 8 C -0.192 4.192 9 N -0.304 5.304 10 C -0.011 4.011 11 C -0.183 4.183 12 C -0.085 4.085 13 C -0.254 4.254 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.213 4.213 25 C -0.070 4.070 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.119 0.881 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.654 2.143 -18.476 22.496 hybrid contribution -1.349 -1.417 -0.973 2.185 sum 11.305 0.726 -19.450 22.508 Atomic orbital electron populations 1.22298 0.96013 1.02329 1.02653 1.22059 0.93721 0.93845 0.88231 1.21842 1.01553 0.94676 1.02512 1.88073 1.86262 1.19100 1.34596 1.22702 0.98902 0.82849 0.97010 1.21602 0.93904 0.97008 0.89981 0.93181 1.21671 0.95037 1.02236 1.00240 1.60528 1.05852 1.50412 1.13630 1.20687 0.97653 0.91322 0.91416 1.19117 0.96096 1.05169 0.97963 1.20574 0.92770 0.97847 0.97351 1.21103 1.01040 1.05991 0.97273 1.19395 0.89747 0.92360 0.88293 1.83981 1.19578 1.66708 1.37971 1.21315 0.85253 1.29636 1.10554 0.89145 1.25279 0.99080 0.96907 0.95268 1.70040 1.32267 1.35876 1.11670 0.85723 0.80130 0.78753 0.78883 1.19920 1.20258 1.19235 1.20232 0.93268 1.05620 1.02214 1.20466 0.97466 0.96154 0.92871 0.92015 0.92639 0.91358 0.92858 0.92187 0.91580 0.91549 0.93201 0.93682 0.90949 0.92936 0.93350 0.83936 0.91164 0.95731 0.88055 0.85718 0.92056 0.86590 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.53 37.16 0.35 -1.21 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.63 16 3 C -0.15 -1.20 9.56 37.16 0.36 -0.84 16 4 O -0.36 -4.12 9.06 -35.23 -0.32 -4.44 16 5 C 0.06 0.61 5.30 37.16 0.20 0.80 16 6 C 0.08 0.90 3.02 -67.71 -0.20 0.70 16 7 H 0.05 0.49 7.80 -51.92 -0.40 0.08 16 8 C -0.13 -1.41 9.22 37.16 0.34 -1.07 16 9 N -0.67 -8.88 6.25 -107.99 -0.67 -9.55 16 10 C 0.12 1.63 5.61 -4.98 -0.03 1.60 16 11 C -0.18 -3.17 5.40 -104.57 -0.56 -3.74 16 12 C -0.07 -1.23 9.69 -39.61 -0.38 -1.62 16 13 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 14 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 15 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 16 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 20 Si 0.94 20.73 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.19 -4.24 9.99 -39.39 -0.39 -4.63 16 25 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.41 7.79 -51.93 -0.40 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.04 0.42 7.75 -51.93 -0.40 0.01 16 35 H 0.07 0.89 7.56 -51.93 -0.39 0.50 16 36 H 0.05 0.56 7.45 -51.93 -0.39 0.17 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.34 4.63 8.27 -39.29 -0.33 4.31 16 39 H 0.07 0.94 7.38 -51.93 -0.38 0.55 16 40 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 45 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -30.95 370.87 -8.34 -39.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.45 Total: 5.97 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.22 Total: -22.48 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.08 Total: -34.44 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.32 Total: -9.64 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.95 -8.34 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800233922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.022 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds