Wall clock time and date at job start Tue Mar 31 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 O 1.42897 * 109.47366 * 119.99999 * 2 1 3 5 5 C 1.42902 * 113.99843 * 90.00048 * 4 2 1 6 6 C 1.53001 * 109.46708 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.47102 * 185.00124 * 6 5 4 8 8 C 1.53001 * 109.47396 * 304.99776 * 6 5 4 9 9 N 1.46903 * 109.47409 * 65.00296 * 6 5 4 10 10 C 1.46896 * 110.99987 * 155.00022 * 9 6 5 11 11 C 1.50701 * 109.47050 * 179.97438 * 10 9 6 12 12 C 1.38302 * 119.93101 * 89.99407 * 11 10 9 13 13 C 1.38105 * 120.06695 * 180.02562 * 12 11 10 14 14 C 1.38871 * 119.93200 * 359.97438 * 13 12 11 15 15 O 1.35753 * 120.07178 * 180.02562 * 14 13 12 16 16 C 1.34831 * 116.99766 * 354.46580 * 15 14 13 17 17 H 1.08005 * 119.99910 * 5.05947 * 16 15 14 18 18 C 1.38653 * 120.00325 * 185.05796 * 16 15 14 19 19 N 1.31555 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00359 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47164 * 89.99653 * 20 18 16 22 22 H 1.48499 * 109.47014 * 210.00195 * 20 18 16 23 23 H 1.48506 * 109.46904 * 329.99621 * 20 18 16 24 24 C 1.38880 * 119.86456 * 0.27348 * 14 13 12 25 25 C 1.38102 * 119.92774 * 359.49328 * 24 14 13 26 26 H 1.08998 * 109.47336 * 60.00048 * 1 2 3 27 27 H 1.09001 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47041 * 299.99708 * 1 2 3 29 29 H 1.09001 * 109.47041 * 240.00292 * 2 1 3 30 30 H 1.08996 * 109.47552 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47237 * 300.00296 * 3 2 1 32 32 H 1.09003 * 109.47323 * 59.99844 * 3 2 1 33 33 H 1.08999 * 109.47204 * 60.00315 * 5 4 2 34 34 H 1.08998 * 109.47302 * 299.99786 * 5 4 2 35 35 H 1.08999 * 109.46850 * 60.00401 * 8 6 5 36 36 H 1.09000 * 109.46961 * 180.02562 * 8 6 5 37 37 H 1.09003 * 109.47094 * 300.00390 * 8 6 5 38 38 H 1.00895 * 111.00134 * 31.04191 * 9 6 5 39 39 H 1.08992 * 109.47420 * 59.99615 * 10 9 6 40 40 H 1.09000 * 109.46921 * 299.99445 * 10 9 6 41 41 H 1.08001 * 119.96675 * 0.02562 * 12 11 10 42 42 H 1.07996 * 120.03107 * 179.97438 * 13 12 11 43 43 H 0.97003 * 120.00171 * 179.97438 * 19 18 16 44 44 H 1.08001 * 120.03810 * 179.72208 * 24 14 13 45 45 H 1.07994 * 119.96815 * 180.22560 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7080 -2.6926 2.2945 7 1 2.9402 -3.7455 2.1345 8 6 3.9696 -1.9554 2.7482 9 7 1.6715 -2.5714 3.3283 10 6 1.8307 -3.6075 4.3574 11 6 0.7526 -3.4512 5.3987 12 6 -0.4531 -4.1119 5.2482 13 6 -1.4433 -3.9702 6.2005 14 6 -1.2272 -3.1638 7.3102 15 8 -2.1983 -3.0229 8.2482 16 6 -3.3892 -3.5990 7.9876 17 1 -3.5118 -4.2104 7.1057 18 6 -4.4563 -3.4067 8.8517 19 7 -4.3068 -2.6624 9.9261 20 14 -6.1060 -4.2055 8.4910 21 1 -6.1556 -5.5471 9.1255 22 1 -7.1962 -3.3585 9.0381 23 1 -6.2776 -4.3456 7.0226 24 6 -0.0174 -2.4975 7.4558 25 6 0.9707 -2.6471 6.5026 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 2.9321 -2.2466 0.1986 34 1 1.2539 -2.5434 0.7124 35 1 3.7375 -0.9026 2.9083 36 1 4.3316 -2.3935 3.6784 37 1 4.7388 -2.0454 1.9811 38 1 0.7490 -2.6049 2.9212 39 1 2.8081 -3.5044 4.8286 40 1 1.7514 -4.5922 3.8969 41 1 -0.6204 -4.7392 4.3852 42 1 -2.3847 -4.4861 6.0822 43 1 -5.0535 -2.5275 10.5305 44 1 0.1520 -1.8661 8.3155 45 1 1.9131 -2.1322 6.6171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800233922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:05 Heat of formation + Delta-G solvation = -79.981218 kcal Electronic energy + Delta-G solvation = -22984.566326 eV Core-core repulsion = 19580.630641 eV Total energy + Delta-G solvation = -3403.935685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79149 -39.66060 -38.60599 -37.07380 -34.38473 -33.69697 -32.23435 -31.74981 -29.77430 -28.18247 -27.54309 -27.20402 -25.16637 -23.59497 -22.20455 -21.92754 -21.37943 -19.83368 -18.85641 -17.83007 -16.98077 -16.59980 -16.44836 -16.29484 -15.72606 -15.56441 -15.55597 -15.32022 -15.09251 -14.52413 -14.31630 -14.14534 -13.98508 -13.65469 -13.45758 -13.29053 -13.05017 -12.98596 -12.83564 -12.79061 -12.50997 -12.37435 -12.25788 -12.20584 -12.13170 -11.86266 -11.60080 -11.45546 -11.16039 -10.78842 -10.40822 -9.76083 -9.24196 -8.88129 -8.46683 -6.14995 0.62094 0.69672 1.34572 1.44212 1.52497 2.18026 2.77604 2.83079 3.11832 3.50654 3.54003 3.89111 4.04186 4.06514 4.12008 4.14859 4.21411 4.26179 4.33857 4.47239 4.50340 4.54468 4.63495 4.74867 4.75460 4.81037 4.83505 4.93363 4.94171 4.98481 5.05130 5.09065 5.13627 5.16137 5.32692 5.33416 5.35846 5.53982 5.60703 5.72473 5.83735 6.03621 6.17645 6.28008 6.46725 6.55126 6.97944 7.79719 8.76886 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002915 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.517213 B = 9603.383516 C =10378.435365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.075 3.925 3 C -0.147 4.147 4 O -0.387 6.387 5 C 0.061 3.939 6 C 0.085 3.915 7 H 0.069 0.931 8 C -0.130 4.130 9 N -0.685 5.685 10 C 0.122 3.878 11 C -0.156 4.156 12 C -0.062 4.062 13 C -0.243 4.243 14 C 0.114 3.886 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.207 4.207 25 C -0.048 4.048 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.339 0.661 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.110 0.890 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 0.061 -22.917 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.204 4.204 4 O -0.306 6.306 5 C -0.016 4.016 6 C -0.024 4.024 7 H 0.087 0.913 8 C -0.188 4.188 9 N -0.318 5.318 10 C -0.006 4.006 11 C -0.157 4.157 12 C -0.080 4.080 13 C -0.262 4.262 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.176 1.176 24 C -0.226 4.226 25 C -0.067 4.067 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.112 0.820 -22.018 26.165 hybrid contribution -1.449 -0.973 -0.104 1.748 sum 12.663 -0.153 -22.122 25.490 Atomic orbital electron populations 1.22287 0.96243 1.02114 1.02462 1.22210 0.93571 0.94236 0.88261 1.21850 1.01633 0.94326 1.02614 1.88049 1.86514 1.20082 1.36005 1.22778 0.99710 0.82123 0.96992 1.21689 0.92941 0.98161 0.89633 0.91302 1.21633 0.95590 1.00739 1.00855 1.60462 1.06489 1.50241 1.14622 1.20674 0.96395 0.92742 0.90762 1.19647 0.96386 1.01963 0.97716 1.20944 0.91995 0.97796 0.97314 1.21224 1.01934 1.05635 0.97396 1.19926 0.90060 0.94393 0.89290 1.83944 1.20689 1.69041 1.40420 1.21829 0.85790 1.30088 1.11267 0.88117 1.26612 1.03293 0.97450 0.94788 1.70191 1.33816 1.38652 1.13418 0.84580 0.74244 0.77845 0.79486 1.18720 1.19593 1.17621 1.20461 0.93387 1.05647 1.03141 1.20827 0.97599 0.96039 0.92213 0.90327 0.92831 0.93425 0.91056 0.92038 0.89719 0.93216 0.91172 0.93258 0.93168 0.93094 0.91523 0.84189 0.90019 0.93557 0.84331 0.86397 0.91852 0.87217 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.53 71.98 0.69 -2.15 16 2 C 0.07 1.19 3.34 30.60 0.10 1.30 16 3 C -0.15 -2.14 9.56 71.98 0.69 -1.45 16 4 O -0.39 -8.02 9.06 -148.98 -1.35 -9.37 16 5 C 0.06 0.98 5.30 71.98 0.38 1.36 16 6 C 0.08 1.50 3.02 44.92 0.14 1.63 16 7 H 0.07 1.00 7.80 -2.38 -0.02 0.98 16 8 C -0.13 -2.35 9.22 71.98 0.66 -1.69 16 9 N -0.69 -15.78 6.25 -495.58 -3.10 -18.87 16 10 C 0.12 2.87 5.61 85.56 0.48 3.35 16 11 C -0.16 -4.98 5.40 -19.83 -0.11 -5.08 16 12 C -0.06 -2.15 9.69 22.25 0.22 -1.93 16 13 C -0.24 -10.78 9.17 22.39 0.21 -10.57 16 14 C 0.11 5.85 6.65 22.58 0.15 6.00 16 15 O -0.23 -14.51 9.76 -22.78 -0.22 -14.73 16 16 C -0.41 -24.60 9.49 67.92 0.64 -23.96 16 17 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.73 13.67 21.61 0.30 -57.43 16 20 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 24 C -0.21 -9.27 9.99 22.39 0.22 -9.05 16 25 C -0.05 -1.73 9.69 22.25 0.22 -1.51 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.87 7.87 -2.39 -0.02 0.86 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.88 7.79 -2.39 -0.02 0.86 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 34 H 0.05 0.75 7.75 -2.39 -0.02 0.73 16 35 H 0.05 1.14 7.56 -2.39 -0.02 1.12 16 36 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.34 8.12 8.27 -89.70 -0.74 7.38 16 39 H 0.08 1.80 7.38 -2.39 -0.02 1.78 16 40 H 0.05 0.94 8.00 -2.39 -0.02 0.92 16 41 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 45 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -72.06 370.87 3.03 -69.03 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.22 Total: 30.57 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 5.15 Total: -44.70 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -2.80 Total: -76.30 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.57 Total: -24.10 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.06 3.03 -69.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800233922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.948 kcal (2) G-P(sol) polarization free energy of solvation -72.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds