Wall clock time and date at job start Tue Mar 31 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 O 1.42900 * 109.47254 * 119.99625 * 2 1 3 5 5 C 1.42899 * 114.00030 * 150.00221 * 4 2 1 6 6 C 1.52997 * 109.46975 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.47126 * 174.99859 * 6 5 4 8 8 C 1.52998 * 109.47398 * 55.00296 * 6 5 4 9 9 N 1.46903 * 109.47531 * 294.99871 * 6 5 4 10 10 C 1.46895 * 111.00273 * 205.00213 * 9 6 5 11 11 C 1.50701 * 109.47055 * 180.02562 * 10 9 6 12 12 C 1.38295 * 119.93297 * 89.99744 * 11 10 9 13 13 C 1.38099 * 120.06865 * 180.25412 * 12 11 10 14 14 C 1.38882 * 119.93206 * 359.47410 * 13 12 11 15 15 O 1.35746 * 120.07145 * 180.25590 * 14 13 12 16 16 C 1.34834 * 117.00340 * 174.73672 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05417 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05311 * 16 15 14 19 19 N 1.31560 * 119.99769 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00099 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47365 * 90.00106 * 20 18 16 22 22 H 1.48504 * 109.47275 * 210.00122 * 20 18 16 23 23 H 1.48500 * 109.47373 * 330.00058 * 20 18 16 24 24 C 1.38876 * 119.85943 * 0.52538 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72571 * 24 14 13 26 26 H 1.09000 * 109.47370 * 300.00120 * 1 2 3 27 27 H 1.09000 * 109.46823 * 60.00432 * 1 2 3 28 28 H 1.09005 * 109.46481 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47370 * 239.99880 * 2 1 3 30 30 H 1.09010 * 109.47023 * 299.99700 * 3 2 1 31 31 H 1.09000 * 109.47164 * 59.99754 * 3 2 1 32 32 H 1.08995 * 109.47186 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47370 * 60.00207 * 5 4 2 34 34 H 1.08994 * 109.46931 * 300.00108 * 5 4 2 35 35 H 1.08999 * 109.47282 * 59.99704 * 8 6 5 36 36 H 1.09002 * 109.47625 * 179.97438 * 8 6 5 37 37 H 1.09008 * 109.46625 * 299.99870 * 8 6 5 38 38 H 1.00900 * 110.99842 * 328.95779 * 9 6 5 39 39 H 1.08996 * 109.47140 * 60.00358 * 10 9 6 40 40 H 1.09003 * 109.46913 * 299.99590 * 10 9 6 41 41 H 1.08000 * 119.96836 * 359.97438 * 12 11 10 42 42 H 1.08002 * 120.03655 * 179.72759 * 13 12 11 43 43 H 0.96997 * 119.99989 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.03796 * 179.70626 * 24 14 13 45 45 H 1.07997 * 119.96864 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6755 -2.0089 2.2943 7 1 4.5909 -2.5787 2.1342 8 6 2.5598 -2.9529 2.7469 9 7 3.9064 -0.9920 3.3290 10 6 4.8297 -1.4882 4.3581 11 6 5.0413 -0.4203 5.4002 12 6 4.2102 -0.3588 6.5038 13 6 4.3983 0.6218 7.4578 14 6 5.4301 1.5402 7.3136 15 8 5.6208 2.5021 8.2523 16 6 6.7041 3.2918 8.1083 17 1 7.3280 3.1978 7.2318 18 6 7.0170 4.2244 9.0855 19 7 8.0744 4.9945 8.9451 20 14 5.9382 4.3862 10.6017 21 1 6.4362 3.4749 11.6633 22 1 5.9806 5.7873 11.0922 23 1 4.5400 4.0252 10.2554 24 6 6.2630 1.4757 6.2042 25 6 6.0666 0.4959 5.2510 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 4.0200 -0.5873 0.7125 34 1 3.1809 -2.0705 0.1988 35 1 2.3885 -3.7075 1.9792 36 1 2.8516 -3.4410 3.6768 37 1 1.6444 -2.3831 2.9070 38 1 4.2457 -0.1331 2.9225 39 1 5.7847 -1.7414 3.8977 40 1 4.4064 -2.3756 4.8286 41 1 3.4104 -1.0756 6.6175 42 1 3.7462 0.6721 8.3173 43 1 8.2931 5.6472 9.6285 44 1 7.0633 2.1913 6.0867 45 1 6.7136 0.4456 4.3878 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800233923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:07 Heat of formation + Delta-G solvation = -58.671231 kcal Electronic energy + Delta-G solvation = -22991.199788 eV Core-core repulsion = 19588.188173 eV Total energy + Delta-G solvation = -3403.011615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.26156 -38.83535 -37.26311 -35.97810 -32.99904 -32.36216 -31.22196 -30.19786 -28.61624 -27.52376 -26.58741 -25.46893 -23.76446 -22.01841 -21.53065 -20.58586 -20.32795 -17.86805 -17.29281 -17.08165 -15.98776 -15.81358 -15.08602 -14.75329 -14.63731 -14.49618 -13.96653 -13.78626 -13.74690 -13.41531 -13.27699 -12.79501 -12.64245 -12.62202 -12.42224 -12.22570 -12.15776 -12.10893 -11.86785 -11.64646 -11.50686 -11.24692 -10.91792 -10.81619 -10.68647 -10.63594 -10.55469 -10.12727 -9.70649 -9.36358 -8.85188 -8.30938 -8.19678 -7.28364 -6.40198 -4.06681 2.17492 2.22778 3.23510 3.27156 3.42440 3.47539 4.18605 4.25531 4.57993 4.64683 4.77468 4.82930 4.89158 4.90608 4.97186 5.12379 5.15197 5.21578 5.34848 5.37481 5.41310 5.50513 5.60522 5.61006 5.61901 5.70544 5.72182 5.80704 5.88684 5.95603 5.96327 6.03348 6.16411 6.35306 6.38702 6.61981 6.83049 7.01211 7.09727 7.21579 7.29756 7.32924 7.52459 7.65118 7.82247 8.06121 8.95399 9.58585 10.67592 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.002853 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.480414 B = 9811.380545 C =10351.741778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.362 6.362 5 C 0.062 3.938 6 C 0.085 3.915 7 H 0.051 0.949 8 C -0.134 4.134 9 N -0.672 5.672 10 C 0.115 3.885 11 C -0.174 4.174 12 C -0.053 4.053 13 C -0.194 4.194 14 C 0.161 3.839 15 O -0.218 6.218 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.222 4.222 25 C -0.068 4.068 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.342 0.658 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.132 0.868 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -13.134 -17.220 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.281 6.281 5 C -0.015 4.015 6 C -0.025 4.025 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.304 5.304 10 C -0.013 4.013 11 C -0.175 4.175 12 C -0.072 4.072 13 C -0.213 4.213 14 C 0.109 3.891 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.241 4.241 25 C -0.087 4.087 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.212 -13.056 -16.397 23.771 hybrid contribution 0.911 0.374 -0.187 1.002 sum -10.301 -12.681 -16.584 23.280 Atomic orbital electron populations 1.21842 0.93736 1.02491 1.02506 1.22062 0.94997 0.92570 0.88230 1.22298 1.01494 0.96852 1.02648 1.88067 1.35702 1.69683 1.34623 1.22700 0.86472 0.95318 0.96995 1.21601 0.97622 0.93301 0.89958 0.93114 1.21672 0.99446 0.97811 1.00256 1.60525 1.50561 1.05688 1.13667 1.20708 0.93038 0.96078 0.91441 1.19186 0.99853 1.00655 0.97814 1.20465 0.97155 0.96721 0.92821 1.20224 1.01100 0.97823 1.02161 1.19140 0.93386 0.87891 0.88663 1.83575 1.44319 1.39616 1.44825 1.20767 1.02192 1.14725 1.08761 0.87684 1.24464 0.96170 0.94878 0.98508 1.69648 1.24969 1.21643 1.35668 0.86179 0.81720 0.77303 0.81699 1.19902 1.20810 1.18315 1.21223 1.03917 1.02605 0.96345 1.20633 0.96457 0.94092 0.97501 0.91574 0.91564 0.92190 0.92832 0.92002 0.91380 0.92611 0.93629 0.93173 0.93314 0.92947 0.90961 0.83885 0.95547 0.91070 0.86865 0.86593 0.91084 0.85085 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 37.16 0.36 -0.80 16 2 C 0.08 0.70 3.34 -26.73 -0.09 0.61 16 3 C -0.18 -1.52 9.53 37.16 0.35 -1.17 16 4 O -0.36 -4.00 9.06 -35.23 -0.32 -4.32 16 5 C 0.06 0.59 5.30 37.16 0.20 0.78 16 6 C 0.08 0.87 3.02 -67.71 -0.20 0.67 16 7 H 0.05 0.48 7.80 -51.92 -0.40 0.07 16 8 C -0.13 -1.36 9.22 37.16 0.34 -1.02 16 9 N -0.67 -8.53 6.25 -107.99 -0.67 -9.21 16 10 C 0.12 1.54 5.61 -4.98 -0.03 1.51 16 11 C -0.17 -2.90 5.40 -104.57 -0.56 -3.47 16 12 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 13 C -0.19 -3.94 9.99 -39.39 -0.39 -4.33 16 14 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 15 O -0.22 -5.85 8.59 0.05 0.00 -5.85 16 16 C -0.39 -11.07 9.95 30.89 0.31 -10.76 16 17 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 18 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 19 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 20 Si 0.91 21.91 28.62 -169.99 -4.86 17.04 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.22 -4.82 9.17 -39.40 -0.36 -5.18 16 25 C -0.07 -1.23 9.69 -39.61 -0.38 -1.61 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.40 7.79 -51.93 -0.40 0.00 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.05 0.41 7.75 -51.93 -0.40 0.01 16 34 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.53 7.45 -51.93 -0.39 0.15 16 37 H 0.07 0.86 7.56 -51.92 -0.39 0.46 16 38 H 0.34 4.47 8.27 -39.29 -0.33 4.15 16 39 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 40 H 0.07 0.91 7.38 -51.93 -0.38 0.52 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -29.83 369.75 -8.18 -38.02 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.46 Total: 4.51 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.21 Total: -20.89 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.10 Total: -34.09 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.32 Total: -10.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.83 -8.18 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800233923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.653 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds