Wall clock time and date at job start Tue Mar 31 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 117.00268 * 2 1 4 4 C 1.38741 * 120.05689 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94289 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05629 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94323 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47253 * 89.99880 * 7 6 5 9 9 C 1.53001 * 109.47376 * 179.97438 * 8 7 6 10 10 N 1.46891 * 109.47079 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00071 * 66.05379 * 10 9 8 12 12 C 1.46905 * 110.99898 * 190.00376 * 10 9 8 13 13 C 1.53000 * 109.47123 * 170.00473 * 12 10 9 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 10 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 10 16 16 C 1.50699 * 109.47083 * 179.97438 * 13 12 10 17 17 H 1.08000 * 119.99792 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99730 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 120.00223 * 0.02562 * 18 16 13 21 21 H 1.48501 * 109.46854 * 89.99533 * 20 18 16 22 22 H 1.48495 * 109.46995 * 209.99565 * 20 18 16 23 23 H 1.48503 * 109.46814 * 329.99605 * 20 18 16 24 24 C 1.38266 * 120.11086 * 0.25688 * 6 5 4 25 25 C 1.38141 * 120.05481 * 359.44768 * 24 6 5 26 26 H 1.08996 * 109.46797 * 59.99946 * 1 2 3 27 27 H 1.09004 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46942 * 299.99826 * 1 2 3 29 29 H 1.08001 * 120.02722 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.96969 * 179.97438 * 5 4 3 31 31 H 1.09008 * 109.47048 * 330.00080 * 7 6 5 32 32 H 1.09000 * 109.47234 * 210.00400 * 7 6 5 33 33 H 1.09008 * 109.46930 * 60.00128 * 8 7 6 34 34 H 1.09000 * 109.47425 * 300.00403 * 8 7 6 35 35 H 1.09008 * 109.46777 * 60.00291 * 9 8 7 36 36 H 1.08997 * 109.46901 * 300.00836 * 9 8 7 37 37 H 1.09002 * 109.47298 * 183.95531 * 11 10 9 38 38 H 1.09011 * 109.46893 * 303.94641 * 11 10 9 39 39 H 1.08994 * 109.47518 * 63.94659 * 11 10 9 40 40 H 1.08992 * 109.47078 * 50.00160 * 12 10 9 41 41 H 1.09004 * 109.46829 * 289.99807 * 12 10 9 42 42 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 43 43 H 0.96999 * 119.99784 * 180.02562 * 19 18 16 44 44 H 1.07999 * 119.96946 * 179.70442 * 24 6 5 45 45 H 1.08001 * 120.02675 * 180.25297 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.2172 5.4744 -1.4393 9 6 4.9112 6.8379 -1.4382 10 7 5.1324 7.2759 -2.8227 11 6 3.8565 7.5340 -3.5034 12 6 6.0019 8.4591 -2.8680 13 6 6.4113 8.7361 -4.3160 14 1 5.5202 8.9168 -4.9173 15 8 7.1160 7.6069 -4.8360 16 6 7.3028 9.9502 -4.3625 17 1 7.5521 10.4723 -3.4506 18 6 7.8001 10.3944 -5.5693 19 7 8.5777 11.4543 -5.6100 20 14 7.3683 9.4917 -7.1467 21 1 6.1301 10.0720 -7.7260 22 1 8.4824 9.6323 -8.1183 23 1 7.1489 8.0534 -6.8497 24 6 1.9212 3.6047 0.0080 25 6 1.2917 2.3751 0.0014 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0209 0.3798 -0.0005 30 1 5.1346 2.5749 0.0000 31 1 4.9445 4.9375 0.5161 32 1 3.3585 5.7456 0.5177 33 1 3.2589 5.5553 -1.9527 34 1 4.8449 4.7472 -1.9543 35 1 5.8694 6.7574 -0.9247 36 1 4.2831 7.5649 -0.9233 37 1 4.0459 7.7887 -4.5461 38 1 3.2319 6.6419 -3.4550 39 1 3.3447 8.3627 -3.0141 40 1 6.8929 8.2784 -2.2668 41 1 5.4644 9.3205 -2.4714 42 1 7.9218 7.3876 -4.3486 43 1 8.9273 11.7671 -6.4590 44 1 1.3344 4.5113 0.0141 45 1 0.2130 2.3202 0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:26 Heat of formation + Delta-G solvation = -64.522765 kcal Electronic energy + Delta-G solvation = -22753.684791 eV Core-core repulsion = 19350.419435 eV Total energy + Delta-G solvation = -3403.265356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39794 -38.29222 -37.60795 -35.50290 -33.56212 -32.19009 -31.32852 -30.13958 -28.56080 -27.73916 -26.51734 -25.36696 -23.19094 -22.83178 -21.20996 -20.57458 -19.98325 -18.43251 -17.27056 -16.58323 -16.05171 -15.79493 -15.36684 -14.99364 -14.79419 -14.70395 -14.44092 -14.15955 -13.85159 -13.66893 -13.35446 -13.19043 -13.05674 -12.59824 -12.35918 -12.27763 -11.96240 -11.68987 -11.53277 -11.34127 -11.15030 -11.06584 -10.96484 -10.87775 -10.77118 -10.47449 -10.23610 -9.82380 -9.22760 -8.97657 -8.58756 -8.30724 -8.17889 -7.73553 -6.10183 -4.21088 1.11516 1.19329 2.97103 3.41799 3.51352 3.51580 3.79978 4.34767 4.49920 4.57397 4.60920 4.72377 4.73946 4.77321 4.98264 5.07977 5.15174 5.19680 5.25129 5.35775 5.36945 5.46878 5.55307 5.68493 5.74403 5.80638 5.82108 5.88146 5.98085 6.05757 6.09961 6.13306 6.17595 6.29238 6.34110 6.46322 6.50781 6.54236 6.65638 7.11034 7.31790 7.44024 7.62808 7.74352 8.32772 8.86787 9.16356 9.55281 11.00455 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033382 B = 0.002367 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.583316 B =11826.551483 C =12054.801222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.149 4.149 5 C -0.076 4.076 6 C -0.110 4.110 7 C -0.077 4.077 8 C -0.109 4.109 9 C 0.054 3.946 10 N -0.534 5.534 11 C 0.024 3.976 12 C 0.040 3.960 13 C 0.201 3.799 14 H 0.052 0.948 15 O -0.570 6.570 16 C -0.565 4.565 17 H 0.070 0.930 18 C 0.082 3.918 19 N -0.895 5.895 20 Si 0.871 3.129 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.215 1.215 24 C -0.078 4.078 25 C -0.206 4.206 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.017 0.983 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.354 0.646 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 -20.026 13.572 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.147 4.147 9 C -0.074 4.074 10 N -0.258 5.258 11 C -0.124 4.124 12 C -0.087 4.087 13 C 0.143 3.857 14 H 0.070 0.930 15 O -0.375 6.375 16 C -0.603 4.603 17 H 0.088 0.912 18 C -0.122 4.122 19 N -0.532 5.532 20 Si 0.697 3.303 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.137 1.137 24 C -0.097 4.097 25 C -0.225 4.225 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.199 0.801 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.722 -20.481 12.795 28.816 hybrid contribution -0.455 0.747 0.037 0.875 sum -16.176 -19.735 12.832 28.562 Atomic orbital electron populations 1.23037 0.78501 1.03845 1.01342 1.86057 1.21307 1.27121 1.88914 1.19035 0.92422 0.84070 0.97301 1.20436 0.91326 0.98723 1.06281 1.20918 1.00035 0.90931 0.97551 1.19858 0.93485 0.95480 1.02246 1.20551 1.00306 0.92776 0.97822 1.21591 1.00969 0.97064 0.95042 1.22121 0.99723 0.95298 0.90265 1.61996 1.14108 1.35629 1.14047 1.22409 0.90746 0.99112 1.00161 1.22846 0.95579 0.89043 1.01262 1.19712 0.92635 0.84883 0.88464 0.93039 1.86657 1.41026 1.51481 1.58373 1.21533 1.31498 1.11839 0.95428 0.91153 1.24996 0.93381 0.93946 0.99846 1.69966 1.32706 1.23833 1.26668 0.87027 0.77337 0.84482 0.81431 1.21553 1.22294 1.13677 1.20849 0.94095 0.96960 0.97756 1.21203 0.99883 0.92406 1.08990 0.92643 0.88315 0.92740 0.85290 0.85159 0.90902 0.91309 0.92011 0.90916 0.91138 0.95669 0.90976 0.92112 0.96406 0.91358 0.95137 0.80057 0.92638 0.85861 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.10 10.50 -19.41 -0.20 -3.31 16 3 C 0.12 1.20 6.69 -39.21 -0.26 0.94 16 4 C -0.15 -1.50 9.99 -39.43 -0.39 -1.89 16 5 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 6 C -0.11 -1.10 5.13 -104.60 -0.54 -1.64 16 7 C -0.08 -0.73 5.34 -27.89 -0.15 -0.88 16 8 C -0.11 -1.27 5.13 -26.73 -0.14 -1.41 16 9 C 0.05 0.74 4.96 -3.83 -0.02 0.73 16 10 N -0.53 -9.17 4.63 -242.92 -1.12 -10.29 16 11 C 0.02 0.39 9.12 60.06 0.55 0.93 16 12 C 0.04 0.80 4.56 -3.82 -0.02 0.78 16 13 C 0.20 4.74 2.18 -27.88 -0.06 4.68 16 14 H 0.05 1.26 5.98 -51.93 -0.31 0.95 16 15 O -0.57 -13.29 10.01 -35.23 -0.35 -13.64 16 16 C -0.57 -15.79 9.34 -34.44 -0.32 -16.11 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 19 N -0.89 -27.49 13.96 55.43 0.77 -26.72 16 20 Si 0.87 22.11 26.99 -169.99 -4.59 17.52 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.21 -5.36 5.31 56.52 0.30 -5.06 16 24 C -0.08 -0.75 9.69 -39.61 -0.38 -1.13 16 25 C -0.21 -1.92 9.04 -39.43 -0.36 -2.27 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.07 0.65 8.08 -51.92 -0.42 0.23 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.06 0.74 6.47 -51.92 -0.34 0.40 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.95 7.93 -51.92 -0.41 0.53 16 36 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.07 1.27 6.47 -51.93 -0.34 0.94 16 38 H 0.06 0.85 6.30 -51.92 -0.33 0.52 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 41 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16 42 H 0.35 7.41 9.04 45.56 0.41 7.82 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -32.56 360.81 -8.36 -40.92 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.72 Total: 5.05 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.58 Total: -14.96 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.35 Total: -37.01 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.56 Total: -16.95 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -8.36 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.600 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds