Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 117.00268 * 2 1 4 4 C 1.38741 * 120.05689 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94289 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05629 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94323 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47253 * 89.99880 * 7 6 5 9 9 C 1.53001 * 109.47376 * 179.97438 * 8 7 6 10 10 N 1.46891 * 109.47079 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00071 * 66.05379 * 10 9 8 12 12 C 1.46905 * 110.99898 * 190.00376 * 10 9 8 13 13 C 1.53000 * 109.47123 * 170.00473 * 12 10 9 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 10 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 10 16 16 C 1.50699 * 109.47083 * 179.97438 * 13 12 10 17 17 H 1.08000 * 119.99792 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99730 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 120.00223 * 0.02562 * 18 16 13 21 21 H 1.48501 * 109.46854 * 89.99533 * 20 18 16 22 22 H 1.48495 * 109.46995 * 209.99565 * 20 18 16 23 23 H 1.48503 * 109.46814 * 329.99605 * 20 18 16 24 24 C 1.38266 * 120.11086 * 0.25688 * 6 5 4 25 25 C 1.38141 * 120.05481 * 359.44768 * 24 6 5 26 26 H 1.08996 * 109.46797 * 59.99946 * 1 2 3 27 27 H 1.09004 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46942 * 299.99826 * 1 2 3 29 29 H 1.08001 * 120.02722 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.96969 * 179.97438 * 5 4 3 31 31 H 1.09008 * 109.47048 * 330.00080 * 7 6 5 32 32 H 1.09000 * 109.47234 * 210.00400 * 7 6 5 33 33 H 1.09008 * 109.46930 * 60.00128 * 8 7 6 34 34 H 1.09000 * 109.47425 * 300.00403 * 8 7 6 35 35 H 1.09008 * 109.46777 * 60.00291 * 9 8 7 36 36 H 1.08997 * 109.46901 * 300.00836 * 9 8 7 37 37 H 1.09002 * 109.47298 * 183.95531 * 11 10 9 38 38 H 1.09011 * 109.46893 * 303.94641 * 11 10 9 39 39 H 1.08994 * 109.47518 * 63.94659 * 11 10 9 40 40 H 1.08992 * 109.47078 * 50.00160 * 12 10 9 41 41 H 1.09004 * 109.46829 * 289.99807 * 12 10 9 42 42 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 43 43 H 0.96999 * 119.99784 * 180.02562 * 19 18 16 44 44 H 1.07999 * 119.96946 * 179.70442 * 24 6 5 45 45 H 1.08001 * 120.02675 * 180.25297 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.2172 5.4744 -1.4393 9 6 4.9112 6.8379 -1.4382 10 7 5.1324 7.2759 -2.8227 11 6 3.8565 7.5340 -3.5034 12 6 6.0019 8.4591 -2.8680 13 6 6.4113 8.7361 -4.3160 14 1 5.5202 8.9168 -4.9173 15 8 7.1160 7.6069 -4.8360 16 6 7.3028 9.9502 -4.3625 17 1 7.5521 10.4723 -3.4506 18 6 7.8001 10.3944 -5.5693 19 7 8.5777 11.4543 -5.6100 20 14 7.3683 9.4917 -7.1467 21 1 6.1301 10.0720 -7.7260 22 1 8.4824 9.6323 -8.1183 23 1 7.1489 8.0534 -6.8497 24 6 1.9212 3.6047 0.0080 25 6 1.2917 2.3751 0.0014 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0209 0.3798 -0.0005 30 1 5.1346 2.5749 0.0000 31 1 4.9445 4.9375 0.5161 32 1 3.3585 5.7456 0.5177 33 1 3.2589 5.5553 -1.9527 34 1 4.8449 4.7472 -1.9543 35 1 5.8694 6.7574 -0.9247 36 1 4.2831 7.5649 -0.9233 37 1 4.0459 7.7887 -4.5461 38 1 3.2319 6.6419 -3.4550 39 1 3.3447 8.3627 -3.0141 40 1 6.8929 8.2784 -2.2668 41 1 5.4644 9.3205 -2.4714 42 1 7.9218 7.3876 -4.3486 43 1 8.9273 11.7671 -6.4590 44 1 1.3344 4.5113 0.0141 45 1 0.2130 2.3202 0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -86.909014 kcal Electronic energy + Delta-G solvation = -22754.655532 eV Core-core repulsion = 19350.419435 eV Total energy + Delta-G solvation = -3404.236097 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06282 -39.40107 -38.65692 -37.09395 -34.56943 -34.37989 -32.01370 -31.25115 -30.04607 -28.40301 -27.88045 -26.66971 -24.48084 -23.54777 -22.29933 -21.60517 -21.49608 -19.34348 -19.06820 -17.27080 -16.86083 -16.81489 -16.63287 -16.50570 -16.30008 -16.12475 -15.48539 -15.19399 -14.95327 -14.90345 -14.49394 -14.42240 -14.17050 -13.91073 -13.54148 -13.15038 -12.96457 -12.86459 -12.81549 -12.71138 -12.51093 -12.41897 -12.35100 -11.92776 -11.79199 -11.70246 -11.55839 -11.33488 -11.01576 -10.79377 -10.09221 -9.92747 -9.11163 -8.99732 -8.34855 -6.49074 0.41764 0.47062 1.39972 1.45765 1.77155 2.40802 2.45158 2.78282 3.03145 3.09737 3.86139 3.88033 3.99279 4.07657 4.15035 4.22223 4.28620 4.36390 4.38509 4.47182 4.48532 4.51118 4.57375 4.63429 4.66958 4.72865 4.75595 4.82923 4.86791 4.94823 5.00835 5.09131 5.11628 5.29139 5.36190 5.42382 5.45744 5.48181 5.51786 5.77006 5.87209 6.09060 6.18403 6.31849 6.47246 6.63679 7.24209 7.40009 8.79234 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033382 B = 0.002367 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.583316 B =11826.551483 C =12054.801222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.104 3.896 4 C -0.165 4.165 5 C -0.084 4.084 6 C -0.122 4.122 7 C -0.068 4.068 8 C -0.097 4.097 9 C 0.055 3.945 10 N -0.543 5.543 11 C 0.024 3.976 12 C 0.053 3.947 13 C 0.208 3.792 14 H 0.047 0.953 15 O -0.573 6.573 16 C -0.566 4.566 17 H 0.036 0.964 18 C 0.027 3.973 19 N -0.940 5.940 20 Si 0.938 3.062 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.205 1.205 24 C -0.085 4.085 25 C -0.211 4.211 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.365 0.635 43 H 0.267 0.733 44 H 0.139 0.861 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 -21.667 13.861 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.059 3.941 4 C -0.184 4.184 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.135 4.135 9 C -0.073 4.073 10 N -0.267 5.267 11 C -0.124 4.124 12 C -0.075 4.075 13 C 0.150 3.850 14 H 0.065 0.935 15 O -0.379 6.379 16 C -0.604 4.604 17 H 0.055 0.945 18 C -0.172 4.172 19 N -0.579 5.579 20 Si 0.763 3.237 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.127 1.127 24 C -0.103 4.103 25 C -0.229 4.229 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.212 0.788 43 H 0.075 0.925 44 H 0.157 0.843 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.378 -22.140 13.105 31.047 hybrid contribution 0.025 1.227 0.036 1.228 sum -17.353 -20.913 13.140 30.185 Atomic orbital electron populations 1.23307 0.76649 1.05446 1.02110 1.86032 1.23331 1.27089 1.88884 1.19259 0.92759 0.84690 0.97421 1.20645 0.91773 0.99200 1.06771 1.21107 1.00721 0.90923 0.97393 1.19962 0.93872 0.95550 1.02819 1.20466 1.00897 0.92800 0.96437 1.21466 1.00281 0.95365 0.96396 1.22198 1.00389 0.96442 0.88242 1.61941 1.14534 1.33839 1.16414 1.22426 0.90568 1.00515 0.98911 1.22510 0.96325 0.90190 0.98480 1.19509 0.91376 0.83240 0.90882 0.93502 1.86589 1.41723 1.50744 1.58864 1.21867 1.31543 1.12976 0.94024 0.94522 1.25858 0.93410 0.94683 1.03279 1.70087 1.34503 1.25719 1.27574 0.85990 0.76869 0.83526 0.77353 1.21231 1.22388 1.12721 1.21103 0.94173 0.97683 0.97316 1.21446 1.00944 0.92039 1.08473 0.92007 0.86447 0.91755 0.84774 0.84145 0.90269 0.90292 0.92017 0.92073 0.90875 0.94886 0.92886 0.89791 0.95775 0.91292 0.95847 0.78787 0.92477 0.84348 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.21 10.50 -92.36 -0.97 -7.18 16 3 C 0.10 2.02 6.69 22.51 0.15 2.17 16 4 C -0.17 -3.20 9.99 22.37 0.22 -2.98 16 5 C -0.08 -1.53 9.69 22.25 0.22 -1.32 16 6 C -0.12 -2.20 5.13 -19.85 -0.10 -2.30 16 7 C -0.07 -1.14 5.34 29.85 0.16 -0.98 16 8 C -0.10 -2.03 5.13 30.59 0.16 -1.87 16 9 C 0.05 1.38 4.96 86.31 0.43 1.81 16 10 N -0.54 -17.62 4.63 -922.46 -4.27 -21.89 16 11 C 0.02 0.72 9.12 127.69 1.17 1.88 16 12 C 0.05 2.06 4.56 86.30 0.39 2.45 16 13 C 0.21 9.65 2.18 29.85 0.07 9.72 16 14 H 0.05 2.25 5.98 -2.39 -0.01 2.23 16 15 O -0.57 -25.70 10.01 -148.98 -1.49 -27.19 16 16 C -0.57 -31.93 9.34 25.60 0.24 -31.69 16 17 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 18 C 0.03 1.59 5.47 84.65 0.46 2.05 16 19 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 20 Si 0.94 45.76 26.99 68.60 1.85 47.61 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.21 -9.63 5.31 99.48 0.53 -9.10 16 24 C -0.08 -1.44 9.69 22.25 0.22 -1.22 16 25 C -0.21 -3.54 9.04 22.36 0.20 -3.34 16 26 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 27 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.08 1.23 8.08 -2.38 -0.02 1.21 16 32 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.06 1.29 6.47 -2.38 -0.02 1.28 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.80 7.93 -2.38 -0.02 1.78 16 36 H 0.03 0.79 8.12 -2.39 -0.02 0.78 16 37 H 0.05 1.79 6.47 -2.39 -0.02 1.77 16 38 H 0.08 2.11 6.30 -2.38 -0.02 2.10 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 41 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 42 H 0.37 14.70 9.04 -74.06 -0.67 14.03 16 43 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.14 1.74 6.30 -2.91 -0.02 1.72 16 Total: -1.00 -69.22 360.81 0.63 -68.59 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.12 Total: 22.78 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.09 Total: -24.32 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -3.97 Total: -80.29 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -2.46 Total: -34.38 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.85 Total: 47.61 kcal Total: -69.22 0.63 -68.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.321 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds